Phaser.MRage: Automated molecular replacement

Acta Crystallographica Section D: Biological Crystallography

Volumn 69, Issue 11, 2013, Pages 2276-2286

  Bunkóczi, Gábor ^a   Echols, Nathaniel ^b   McCoy, Airlie J ^a   Oeffner, Robert D ^a   Adams, Paul D ^b   Read, Randy J ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTIFICIAL INTELLIGENCE; AUTOMATION; BIOLOGY; CHEMICAL STRUCTURE; COMPARATIVE STUDY; COMPUTER PROGRAM; CONFERENCE PAPER; METHODOLOGY; MOLECULAR REPLACEMENT; PHASER.MRAGE; PIPELINE; PROTEIN DATABASE; PROTEIN MULTIMERIZATION; PROTEIN TERTIARY STRUCTURE; STANDARD; X RAY CRYSTALLOGRAPHY;

AUTOMATION; MOLECULAR REPLACEMENT; PHASER.MRAGE; PIPELINE;

AMINO ACID SUBSTITUTION; ARTIFICIAL INTELLIGENCE; COMPUTATIONAL BIOLOGY; CRYSTALLOGRAPHY, X-RAY; DATABASES, PROTEIN; MODELS, MOLECULAR; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, TERTIARY; SOFTWARE;

EID: 84887396993     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444913022750     Document Type: Conference Paper

References (35)

1. Abrahams, D. & Grosse-Kunstleve, R. W. (2003). C/C++ Users J. 21, 29-36.
2. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
3. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). J. Mol. Biol. 215, 403-410.
4. Altschul, S. F., Madden, T. L., Schä ffer, A. A., Zhang, J., Zhang, Z., Miller,W. & Lipman, D. J. (1997). Nucleic Acids Res. 25, 3389-3402.
5. Berman, H., Henrick, K. & Nakamura, H. (2003). Nature Struct. Biol. 10, 980.
6. Bibby, J., Keegan, R. M., Mayans, O., Winn, M. D. & Rigden, D. J. (2012). Acta Cryst. D68, 1622-1631.
7. Bunkó czi, G. & Echols, N. (2012). Comput. Crystallogr. Newsl. 3, 37-42.
8. Bunkó czi, G. & Echols, N. (2013). Comput. Crystallogr. Newsl. 4, 16-22.
9. Bunkó czi, G. & Read, R. J. (2011). Acta Cryst. D67, 303-312.
10. Buschmann, F., Meunier, R., Rohnert, H., Sommerlad, P. & Stal, M. (1996). Pattern-Oriented Software Architecture. Chichester: John Wiley & Sons.
11. Chothia, C. & Lesk, A. M. (1986). EMBO J. 5, 823-826.
12. DiMaio, F., Terwilliger, T. C., Read, R. J., Wlodawer, A., Oberdorfer, G., Wagner, U., Valkov, E., Alon, A., Fass, D., Axelrod, H. L., Das, D., Vorobiev, S. M., Iwa?̈, H., Pokkuluri, P. R. & Baker, D. (2011). Nature (London), 473, 540-543.
13. Echols, N., Grosse-Kunstleve, R. W., Afonine, P. V., Bunkó czi, G., Chen, V. B., Headd, J. J., McCoy, A. J., Moriarty, N. W., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C. & Adams, P. D. (2012). J. Appl. Cryst. 45, 581-586.
14. Edgar, R. C. (2004). Nucleic Acids Res. 32, 1792-1797.
15. Grosse-Kunstleve, R. W., Sauter, N. K., Moriarty, N. W. & Adams, P. D. (2002). J. Appl. Cryst. 35, 126-136.
16. Jaroszewski, L., Rychlewski, L., Li, Z., Li, W. & Godzik, A. (2005). Nucleic Acids Res. 33, W284-W288.
17. Keegan, R. M., Long, F., Fazio, V. J.,Winn, M. D.,Murshudov, G. N. & Vagin, A. A. (2011). Acta Cryst. D67, 313-323.
18. Keegan, R. M. & Winn, M. D. (2008). Acta Cryst. D64, 119-124.
19. Krissinel, E. & Henrick, K. (2004). Acta Cryst. D60, 2256-2268.
20. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J. & Higgins, D. G. (2007). Bioinformatics, 23, 2947-2948.
21. Leiros, H.-K. S.,McSweeney, S.M. & Smala° s, A. O. (2001). Acta Cryst. D57, 488-497.
22. Ling, H., Boodhoo, A., Hazes, B., Cummings, M. D., Armstrong, G. D., Brunton, J. L. & Read, R. J. (1998). Biochemistry, 37, 1777-1788.
23. Long, F., Vagin, A. A., Young, P. & Murshudov, G. N. (2008). Acta Cryst. D64, 125-132.
24. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
25. McCoy, A. J., Grosse-Kunstleve, R. W., Storoni, L. C. & Read, R. J. (2005). Acta Cryst. D61, 458-464.
26. McNicholas, S., Potterton, E.,Wilson, K. S. & Noble, M. E. M. (2011). Acta Cryst. D67, 386-394.
27. Piao, S., Song, Y.-L., Kim, J. H., Park, S. Y., Park, J. W., Lee, B. L., Oh, B.-H. & Ha, N.-C. (2005). EMBO J. 24, 4404-4414.
28. Sakai, H., Vassylyeva, M. N., Matsuura, T., Sekine, S., Gotoh, K., Nishiyama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Vassylyev, D. G. & Yokoyama, S. (2003). J. Mol. Biol. 332, 729-740.
29. Schwarzenbacher, R., Godzik, A., Grzechnik, S. K. & Jaroszewski, L. (2004). Acta Cryst. D60, 1229-1236.
30. Sö ding, J., Biegert, A. & Lupas, A. N. (2005). Nucleic Acids Res. 33, W244-W248.
31. Stein, P. E., Boodhoo, A., Tyrrell, G. J., Brunton, J. L. & Read, R. J. (1992). Nature (London), 355, 748-750.
32. Stokes-Rees, I. & Sliz, P. (2010). Proc. Nat. Acad. Sci. USA, 107, 21476-21481.
33. Terwilliger, T. C., Grosse-Kunstleve, R. W., Afonine, P. V., Moriarty, N.W., Zwart, P. H., Hung, L.-W., Read, R. J. & Adams, P. D. (2008). Acta Cryst. D64, 61-69.
34. Vagin, A. & Teplyakov, A. (2010). Acta Cryst. D66, 22-25.
35. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.