Exploring the limits of vector construction based on Citrus tristeza virus

Virology

Volumn 448, Issue , 2014, Pages 274-283

  El Mohtar, Choaa ^a   Dawson, William O ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

Citrus; Citrus tristeza virus; Gene delivery; Systemic infection; Transient expression

Indexed keywords

COAT PROTEIN; VIRUS VECTOR;

3' UNTRANSLATED REGION; ARTICLE; CITRUS; CITRUS TRISTEZAVIRUS; CLOSTEROVIRUS; CONTROLLED STUDY; CTV GENE; GENE CASSETTE; GENE CONSTRUCT; GENE EXPRESSION; GENE PRODUCT; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PRIORITY JOURNAL; VIRUS GENOME;

EID: 84887385428     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2013.10.017     Document Type: Article

References (56)

1. Akbergenov R., Zhanybekova S., Kryldakov R.V., Zhigailov A., Polimbetova N.S., Hohn T., Iskakov B.K. ARC-1, a sequence element complementary to an internal 18S rRNA segment, enhances translation efficiency in plants when present in the leader or intercistronic region of mRNAs. Nucleic Acids Res. 2004, 32:239-247.
2. Allison R.F., Dougherty W.G., Parks T.D., Willis L., Johnston R.E., Kelly M., Armstrong F.B. Biochemical analysis of the capsid protein gene and capsid protein of tobacco etch virus: N-terminal amino acids are located on the virion's surface. J. Virol. 1985, 147:309-316.
3. Ambrós S., El-Mohtar C., Ruiz-Ruiz S., Peña L., Guerri J., Dawson W.O., Moreno P. Agroinoculation of Citrus tristeza virus causes systemic infection and symptoms in the presumed nonhost Nicotiana benthamiana. MPMI 2011, 24:1119-1131.
4. Ayllón M.A., Gowda S., Satyanarayana T., Dawson W.O. cis-acting elements at opposite ends of the Citrus tristeza virus genome differ in initiation and termination of subgenomic RNAs. Virology 2004, 322:41-50.
5. Ayllón M.A., Gowda S., Satyanarayana T., Karasev A.V., Adkins S., Mawassi M., Guerri J., Moreno P., Dawson W.O. Effects of modification of the transcription initiation site context on citrus tristeza virus subgenomic RNA synthesis. J. Virol. 2003, 77:9232-9243.
6. Ayllón M.A., Satyanarayana T., Gowda S., Dawson W.O. An atypical 3'-controller element mediates low-level transcription of the p6 subgenomic mRNA of Citrus tristeza virus. Mol. Plant Pathol. 2005, 6:65-176.
7. Balvay L., Soto Rifo R., Ricci E.P., Decimo D., Ohlmann T. Structural and functional diversity of viral IRESes. Biochim. Biophys. Acta 2009, 1789:542-557.
8. Carrasco P., Daros J.A., Agudelo-Romero P., Elena S.F. A real-time RT-PCR assay for quantifying the fitness of tobacco etch virus in competition experiments. J. Virol. Methods 2007, 139:181-188.
9. Carrington J.C., Cary S.M., Parks T.D., Dougherty W.G. A second proteinase encoded by a plant potyviral genome. EMBO J. 1989, 8:365-370.
10. Carrington J.C., Dougherty W.G. A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing. Proc. Natl. Acad. Sci. USA 1988, 85:3391-3395.
11. Chalfie M., Tu Y., Euskirchen G., Ward W.W., Prasher D.C. Green fluorescent protein as a marker for gene expression. Science 1994, 263:802-805.
12. Chapman S., Kavanagh T., Baulcombe D. Potato virus X as a vector for gene expression in plants. Plant J. 1992, 2:549-557.
13. Crameri A., Whitehorn E.A., Tate E., Stemmer W.P. Improved green fluorescent protein by molecular evolution using DNA shuffling. Nat. BioTech. 1996, 14:315-319.
14. Dawson W.O., Lewandowski D.J., Hilf M.E., Bubrick P., Raffo A.J., Shaw J.J., Grantham G.L., Desjardins P.R. A tobacco mosaic virus-hybrid expresses and loses an added gene. Virology 1989, 172:285-292.
15. Dolja V.V., Hong J., Keller K.E., Martin R.R., Peremyslov V.V. Suppression of potyvirus infection by co-expressed closterovirus protein. Virology 1997, 234:243-252.
16. Dolja V.V., McBride H.J., Carrington J.C. Tagging of plant potyvirus replication and movement by insertion of beta-glucuronidase into the viral polyprotein. Proc. Natl Acad. Sci. USA 1992, 89:10208-10212.
17. Donson J., Kearney C.M., Hilf M.E., Dawson W.O. Systemic expression of a bacterial gene by a tobacco mosaic virus-based vector. Proc. Natl. Acad. Sci. USA 1991, 88:7204-7208.
18. Dorokhov Y.L., Skulachev M.V., Ivanov P.A., Zvereva S.D., Tjulkina L.G., Merits A., Gleba Y.Y., Hohn T., Atabekov J.G. Polypurine (A)-rich sequences promote cross-kingdom conservation of internal ribosome entry. Proc. Natl. Acad. Sci. USA 2002, 99:5301-5306.
19. Fernandez-Miragall O., Lopez de Quinto S., Martinez-Salas E. Relevance of RNA structure for the activity of picornavirus IRES elements. Virus Res. 2009, 139:172-182.
20. Fitzgerald K.D., Semler B.L. Bridging IRES elements in mRNAs to the eukaryotic translation apparatus. Biochim. Biophys. Acta 2009, 1789:518-528.
21. Folimonov A.S., Folimonova S.Y., Bar-Joseph M., Dawson W.O. A stable RNA virus-based vector for citrus trees. Virology 2007, 368:205-216.
22. Gallie D.R. Cap-independent translation conferred by the 5' leader of tobacco etch virus is eukaryotic initiation factor 4G dependent. J. Virol. 2001, 75:12141-12152.
23. Gallie D.R., Tanguay R.L., Leathers V. The tobacco etch viral 5' leader and poly(A) tail are functionally synergistic regulators of translation. Gene 1995, 165:233-238.
24. Gopinath K., Wellink J., Porta C., Taylor K.M., Lomonossoff G.P., van Kammen A. Engineering cowpea mosaic virus RNA-2 into a vector to express heterologous proteins in plants. Virology 2000, 267:159-173.
25. Gowda S., Satyanarayana T., Ayllon M.A., Albiach-Marti M.R., Mawassi M., Rabindran S., Garnsey S.M., Dawson W.O. Characterization of the cis-acting elements controlling subgenomic mRNAs of citrus tristeza virus: production of positive- and negative-stranded 3'-terminal and positive-stranded 5'-terminal RNAs. Virology 2001, 286:134-151.
26. Gowda S., Satyanarayana T., Robertson C.J., Garnsey S.M., Dawson W.O. 2005. Infection of citrus plants with virions generated in Nicotiana benthamiana plants agroinfiltrated with a binary vector based Citrus tristeza virus. In: Hilf, M.E., Duran-Vila, N., Rocha-Peña, M.A. (Eds.), Proceedings of the 16th Conference of the International Organization of Citrus Virologists. Riverside, CA, USA, p. 23-33.
27. Grdzelishvili V.Z., Chapman S.N., Dawson W.O., Lewandowski D.J. Mapping of the Tobacco mosaic virus movement protein and coat protein subgenomic RNA promoters in vivo. Virology 2000, 275:177-192.
28. Hilf M.E., Karasev A.V., Pappu H.R., Gumpf D.J., Niblett C.L., Garnsey S.M. Characterization of citrus tristeza virus subgenomic RNAs in infected tissue. Virology 1995, 208:576-582.
29. Horton R.M., Hunt H.D., Ho S.N., Pullen J.R., Pease L.B. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 1989, 77:61-68.
30. Jefferson R.A., Burgess S.M., Hirsh D. beta-glucuronidase from Escherichia coli as a gene-fusion marker. Proc. Natl. Acad. Sci. USA 1986, 83:8447-8451.
31. Karasev A.V. Genetic diversity and evolution of closteroviruses. Annu. Rev. Phytopathol. 2000, 38:293-324.
32. Karasev A.V., Boyko V.P., Gowda S., Nikolaeva O.V., Hilf M.E., Koonin E.V., Niblett C.L., Cline K., Gumpf D.J., Lee R.F., Garnsey S.M., Lewandowski D.J., Dawson W.O. Complete sequence of the citrus tristeza virus RNA genome. Virology 1995, 208:511-520.
33. Karasev A.V., Nikolaeva O.V., Mushegian A.R., Lee R.F., Dawson W.O. Organization of the 3'-terminal half of beet yellow stunt virus genome and implications for the evolution of closteroviruses. J. Virol. 1996, 221:199-207.
34. Kneller E.L., Rakotondrafara A.M., Miller W.A. Cap independent translation of plant viral RNAs. Virus Res. 2006, 119:63-75.
35. Koh D.C., Wong S.M., Liu D.X. Synergism of the 3'-untranslated region and an internal ribosome entry site differentially enhances the translation of a plant virus coat protein. J. Biol. Chem. 2003, 278:20565-20573.
36. Lehto K., Dawson W.O. Replication, stability, and gene expression of tobacco mosaic virus mutants with a second 30K ORF. Virology 1990, 175:30-40.
37. Lewandowski D.J., Dawson W.O. Deletion of internal sequences results in Tobacco mosaic virus defective RNAs that accumulate to high levels without interfering with replication of the helper virus. Virology 1998, 251:427-437.
38. López C., Navas-Castillo J., Gowda S., Moreno P., Flores R. The 23-kDa protein coded by the 3'-terminal gene of citrus tristeza virus is an RNA-binding protein. Virology 2000, 269:462-470.
39. Lu R., Folimonov A., Shintaku M., Li W.X., Falk B.W., Dawson W.O., Ding S.W. Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proc. Natl. Acad. Sci. USA 2004, 101:15742-15747.
40. Masoumi A., Hanzlik T.N., Christian P.D. Functionality of the 59- and intergenic IRES elements of cricket paralysis virus in a range of insect cell lines, and its relationship with viral activities. Virus Res. 2003, 94:113-120.
41. Navas-Castillo J., Albiach-Martí M.R., Gowda S., Hilf M.E., Garnsey S.M., Dawson W.O. Kinetics of accumulation of citrus tristeza virus RNAs. Virology 1997, 228:92-97.
42. Niepel M., Gallie D.R. Identification and characterization of the functional elements within the tobacco etch virus 5' leader required for cap-independent translation. J. Virol. 1999, 73:9080-9088.
43. Pappu H.R., Karasev A.V., Anderson E.J., Pappu S.S., Hilf M.E., Febres V.J., Eckloff R.M.G., McCaffery M., Boyko V., Gowda S., Dolia V.V., Koonin E.V., Gumpf D.J., Cline K.C., Garnsey S.M., Dawson W.O., Lee R.F., Niblett C.L. Nucleotide sequence and organization of eight 3' open reading frames of the Citrus tristeza closterovirus genome. Virology 1994, 199:35-46.
44. Peremyslov V.V., Hagiwara Y., Dolja V.V. HSP70 homolog functions in cell-to-cell movement of a plant virus. Proc. Natl. Acad. Sci. USA 1999, 96:14771-14776.
45. Roberts L.O., Groppelli E. An atypical IRES within the 50 UTR of a dicistrovirus genome. Virus Res. 2009, 139:157-165.
46. Robertson C.J., Garnsey S.M., Satyanarayana T., Folimonova S., Dawson W.O. 2005. Efficient infection of citrus plants with different cloned constructs of Citrus tristeza virus amplified in Nicotiana benthamiana protoplasts. In: Proceedings of the 16th Conference on IOCV. Riverside, CA, pp. 187-195.
47. Sánchez-Navarro J.A., Miglino R., Ragozzino A., Bol J.F. Engineering of Alfalfa mosaic virus RNA 3 into an expression vector. Arch. Virol. 2001, 146:923-939.
48. Satyanarayana T., Bar-Joseph M., Mawassi M., Albiach-Martí M.R., Ayllón M.A., Gowda S., Hilf M.E., Moreno P., Garnsey S.M., Dawson W.O. Amplification of Citrus tristeza virus from a cDNA clone and infection of citrus trees. Virology 2001, 280:87-96.
49. Satyanarayana T., Gowda S., Ayllón M.A., Albiach-Martí M.R., Dawson W.O. Mutational analysis of the replication signals in the 3'-non translated region of Citrus tristeza virus. Virology 2002, 300:140-152.
50. Satyanarayana T., Gowda S., Ayllón M.A., Albiach-Martí M.R., Rabindram S., Dawson W.O. The p23 protein of Citrus tristeza virus controls asymmetrical RNA accumulation. J. Virol. 2002, 76:473-483.
51. Satyanarayana T., Gowda S., Ayllón M.A., Dawson W.O. Frame shift mutations in infectious cDNA clones of Citrus tristeza virus: a strategy to minimize the toxicity of viral sequences to Escherichia coli. Virology 2003, 313:481-491.
52. Satyanarayana T., Gowda S., Boyko V.P., Albiach-Marti M.R., Mawassi M., Navas-Castillo J., Karasev A.V., Dolja V., Hilf M.E., Lewandowski D.J., Moreno P., Bar-Joseph M., Garnsey S.M., Dawson W.O. An engineered closterovirus RNA replicon and analysis of heterologous terminal sequences for replication. Proc. Natl. Acad. Sci. USA 1999, 96:7433-7438.
53. Satyanarayana T., Gowda S., Mawassi M., Albiach-Marti M.R., Ayllón M.A., Robertson C., Garnsey S.M., Dawson W.O. Closterovirus encoded HSP70 homolog and p61 in addition to both coat proteins function in efficient virion assembly. Virology 2000, 278:253-265.
54. Shivprasad S., Pogue G.P., Lewandowski D.J., Hidalgo J., Donson J., Grill L.K., Dawson W.O. Heterologous sequences greatly affect foreign gene expression in tobacco mosaic virus-based vectors. Virology 1999, 255:312-323.
55. Tatineni S., Robertson C.J., Garnsey S.M., Bar-Joseph M., Gowda S., Dawson W.O. Three genes of Citrus tristeza virus are dispensable for infection and movement throughout some varieties of citrus trees. Virology 2008, 376:297-307.
56. Woolaway K.E., Lazaridis K., Belsham G.J., Carter M.J., Robert L.O. The 5' untranslated region of rhopalosiphum padi virus contains an internal ribosome entry site which functions efficiently in mammalian, plant, and insect translation system. J. Virol 2001, 75:10244-10249.