Estimating the 3D pore size distribution of biopolymer networks from directionally biased data

Biophysical Journal

Volumn 105, Issue 9, 2013, Pages 1967-1975

  Lang, Nadine R ^a   Münster, Stefan ^a   Metzner, Claus ^a   Krauss, Patrick ^a   Schürmann, Sebastian ^a   Lange, Janina ^a   Aifantis, Katerina E ^b   Friedrich, Oliver ^a   Fabry, Ben ^a  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER; COLLAGEN; FIBRIN;

ARTICLE; CHEMISTRY; MICROSCOPY; POROSITY;

BIOPOLYMERS; COLLAGEN; FIBRIN; MICROSCOPY; POROSITY;

EID: 84887374919     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2013.09.038     Document Type: Article

References (41)

1. E. Cukierman, and R. Pankov K.M. Yamada Taking cell-matrix adhesions to the third dimension Science 294 2001 1708 1712
2. J.A. Pedersen, and M.A. Swartz Mechanobiology in the third dimension Ann. Biomed. Eng. 33 2005 1469 1490
3. M.H. Zaman, and L.M. Trapani P. Matsudaira Migration of tumor cells in 3D matrices is governed by matrix stiffness along with cell-matrix adhesion and proteolysis Proc. Natl. Acad. Sci. USA 103 2006 10889 10894
4. P. Friedl, and E.-B. Bröcker The biology of cell locomotion within three-dimensional extracellular matrix Cell. Mol. Life Sci. 57 2000 41 64
5. P. Friedl, and K. Wolf Plasticity of cell migration: a multiscale tuning model J. Cell Biol. 188 2010 11 19
6. K. Wolf, and M. Te Lindert P. Friedl Physical limits of cell migration: control by ECM space and nuclear deformation and tuning by proteolysis and traction force J. Cell Biol. 201 2013 1069 1084
7. M. Tozluoǧlu, and A.L. Tournier E. Sahai Matrix geometry determines optimal cancer cell migration strategy and modulates response to interventions Nat. Cell Biol. 15 2013 751 762
8. W.M. Petroll, L. Ma, and J.V. Jester Direct correlation of collagen matrix deformation with focal adhesion dynamics in living corneal fibroblasts J. Cell Sci. 116 2003 1481 1491
9. J. Brábek, and C.T. Mierke B. Fabry The role of the tissue microenvironment in the regulation of cancer cell motility and invasion Cell Commun. Signal. 8 2010 22
10. D.L. Helseth Jr., and A. Veis Collagen self-assembly in vitro. Differentiating specific telopeptide-dependent interactions using selective enzyme modification and the addition of free amino telopeptide J. Biol. Chem. 256 1981 7118 7128
11. J. Gross, J.H. Highberger, and F.O. Schmitt Collagen structures considered as states of aggregation of a kinetic unit. The tropocollagen particle Proc. Natl. Acad. Sci. USA 40 1954 679 688
12. D.L. Christiansen, E.K. Huang, and F.H. Silver Assembly of type I collagen: fusion of fibril subunits and the influence of fibril diameter on mechanical properties Matrix Biol. 19 2000 409 420
13. J.P. Orgel, and T.C. Irving T.J. Wess Microfibrillar structure of type I collagen in situ Proc. Natl. Acad. Sci. USA 103 2006 9001 9005
14. K.E. Kadler, and D.F. Holmes J.A. Chapman Collagen fibril formation Biochem. J. 316 1996 1 11
15. P.A. Janmey, J.P. Winer, and J.W. Weisel Fibrin gels and their clinical and bioengineering applications J. R. Soc. Interface 6 2009 1 10
16. A. Arkudas, and A. Balzer U. Kneser Evaluation of angiogenesis of bioactive glass in the arteriovenous loop model Tissue Eng. Part C Methods 19 2013 479 486
17. I.N. Chernysh, C. Nagaswami, and J.W. Weisel Visualization and identification of the structures formed during early stages of fibrin polymerization Blood 117 2011 4609 4614
18. Y.L. Yang, and L.J. Kaufman Rheology and confocal reflectance microscopy as probes of mechanical properties and structure during collagen and collagen/hyaluronan self-assembly Biophys. J. 96 2009 1566 1585
19. Y.L. Yang, S. Motte, and L.J. Kaufman Pore size variable type I collagen gels and their interaction with glioma cells Biomaterials 31 2010 5678 5688
20. C.B. Raub, and A.J. Putnam S.C. George Predicting bulk mechanical properties of cellularized collagen gels using multiphoton microscopy Acta Biomater. 6 2010 4657 4665
21. E.A. Ryan, and L.F. Mockros L. Lorand Structural origins of fibrin clot rheology Biophys. J. 77 1999 2813 2826
22. P. Friedl Dynamic imaging of cellular interactions with extracellular matrix Histochem. Cell Biol. 122 2004 183 190
23. I.K. Piechocka, and R.G. Bacabac G.H. Koenderink Structural hierarchy governs fibrin gel mechanics Biophys. J. 98 2010 2281 2289
24. F.C. MacKintosh, J. Käs, and P.A. Janmey Elasticity of semiflexible biopolymer networks Phys. Rev. Lett. 75 1995 4425 4428
25. C. Storm, and J.J. Pastore P.A. Janmey Nonlinear elasticity in biological gels Nature 435 2005 191 194
26. M.L. Gardel, and J.H. Shin D.A. Weitz Elastic behavior of cross-linked and bundled actin networks Science 304 2004 1301 1305
27. C.B. Raub, and J. Unruh S.C. George Image correlation spectroscopy of multiphoton images correlates with collagen mechanical properties Biophys. J. 94 2008 2361 2373
28. A.E.X. Brown, and R.I. Litvinov J.W. Weisel Multiscale mechanics of fibrin polymer: gel stretching with protein unfolding and loss of water Science 325 2009 741 744
29. J.W. Weisel The mechanical properties of fibrin for basic scientists and clinicians Biophys. Chem. 112 2004 267 276
30. A.O. Brightman, and B.P. Rajwa S.L. Voytik-Harbin Time-lapse confocal reflection microscopy of collagen fibrillogenesis and extracellular matrix assembly in vitro Biopolymers 54 2000 222 234
31. L.M. Jawerth, and S. Münster D.A. Weitz A blind spot in confocal reflection microscopy: the dependence of fiber brightness on fiber orientation in imaging biopolymer networks Biophys. J. 98 2010 L1 L3
32. Reference deleted in proof.
33. P. Krauss, and C. Metzner B. Fabry Parameter-free binarization and skeletonization of fiber networks from confocal image stacks PLoS ONE 7 2012 e36575
34. Metzner, C., P. Krauss, and B. Fabry. 2011. Pore sizes in random line networks. ArXiv1110.1803v1.
35. W. Mickel, and S. Münster G.E. Schröder-Turk Robust pore size analysis of filamentous networks from three-dimensional confocal microscopy Biophys. J. 95 2008 6072 6080
36. K. Wolf, and S. Alexander P. Friedl Collagen-based cell migration models in vitro and in vivo Semin. Cell Dev. Biol. 20 2009 931 941
37. Reference deleted in proof.
38. Y. Li, and A. Asadi E.P. Douglas pH effects on collagen fibrillogenesis in vitro: electrostatic interactions and phosphate binding Mater. Sci. Eng. C 29 2009 1643 1649
39. L.J. Kaufman, and C.P. Brangwynne D.A. Weitz Glioma expansion in collagen I matrices: analyzing collagen concentration-dependent growth and motility patterns Biophys. J. 89 2005 635 650
40. Y.L. Yang, L.M. Leone, and L.J. Kaufman Elastic moduli of collagen gels can be predicted from two-dimensional confocal microscopy Biophys. J. 97 2009 2051 2060
41. S. Münster, and B. Fabry A simplified implementation of the bubble analysis of biopolymer network pores Biophys. J. 104 2013 2774 2775