Studies on the molecular evolution of potyviruses

Journal of General Plant Pathology

Volumn 79, Issue 6, 2013, Pages 448-452

  Ohshima, Kazusato ^a  

^a SAGA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84887269844     PISSN: 13452630     EISSN: 1610739X     Source Type: Journal    
DOI: 10.1007/s10327-013-0488-9     Document Type: Article

References (33)

1. Farzadfar Sh, Ohshima K, Pourrahim R, Golnaraghi AR, Sajedi S, Ahoonmanesh A (2005) Reservoir weed hosts for Turnip mosaic virus in Iran. Plant Dis 89: 339.
2. Farzadfar Sh, Tomitaka Y, Ikematsu M, Golnaraghi AR, Pourrahim R, Ohshima K (2009) Molecular characterization of Turnip mosaic virus isolates from Brassicaceae weeds. Eur J Plant Pathol 124: 45-55.
3. Gibbs AJ, Ohshima K (2010) Potyviruses and the digital revolution. Annu Rev Phytopathol 48: 205-223.
4. Gibbs AJ, Ohshima K, Gibbs M, García-Arenal F (2008a) More about plant virus evolution: past, present and future. In: Domingo E, Parrish CR, Holland JJ (eds) Origin and evolution of viruses, 2nd edn. Elsevier, Amsterdam, pp 229-249.
5. Gibbs AJ, Ohshima K, Phillips MJ, Gibbs M (2008b) The prehistory of potyviruses: their initial radiation was during the dawn of agriculture. PLoS ONE 3: e2523.
6. Jenner CE, Tomimura K, Ohshima K, Hughes SL, Walsh JA (2002) Mutations in Turnip mosaic virus P3 and cylindrical inclusion proteins are separately required to overcome two Brassica napus resistance genes. Virology 300: 50-59.
7. Jenner CE, Wang X, Tomimura K, Ohshima K, Ponz F, Walsh JA (2003) The dual role of the potyvirus P3 protein of Turnip mosaic virus as a symptom and avirulence determinant in brassicas. Mol Plant-Microbe Interact 16: 777-784.
8. Korkmaz S, Onder S, Tomitaka Y, Ohshima K (2007) First report of Turnip mosaic virus on Brassicaceae crops in Turkey. Plant Pathol 56: 719.
9. Korkmaz S, Tomitaka Y, Onder S, Ohshima K (2008) Occurrence and molecular characterization of Turkish Isolates of Turnip mosaic virus. Plant Pathol 57: 1155-1162.
10. Kundu AK, Ohshima K, Sako N (1997) Nucleotide sequences of the coat protein genes of two Japanese zucchini yellow mosaic virus isolates. Acta Virol 41: 297-301.
11. Kundu AK, Ohshima K, Sako N, Yaegashi H (1999) Nucleotide sequences of the cylindrical inclusion protein genes of two Japanese zucchini yellow mosaic virus isolates. Acta Virol 43: 57-62.
12. Nguyen HD, Tran HTN, Ohshima K (2013a) Genetic variation of the Turnip mosaic virus population of Vietnam: a case study of founder, regional and local influences. Virus Res 171: 138-149.
13. Nguyen HD, Tomitaka Y, Ho SYW, Duchêne S, Vetten H-J, Lesemann D, Walsh JA, Gibbs AJ, Ohshima K (2013b) Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago. PLoS ONE 8: e55336.
14. Ogawa T, Nakagawa A, Sayama M, Ohshima K (2008a) Ecology and control of potato tuber necrotic ringspot disease (in Japanese). Plant Protect 62: 481-484.
15. Ogawa T, Tomitaka Y, Nakagawa A, Ohshima K (2008b) Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res 131: 199-212.
16. Ogawa T, Nakagawa A, Ohshima K (2011) The genome structure of a Potato virus Y collected from potatoes showing tuber necrotic ringspot disease in the Amami region of Kagoshima Prefecture (in Japanese). Kyushu Plant Protect Res 57: 19-25.
17. Ogawa T, Nakagawa A, Hataya T, Ohshima K (2012) The genetic structure of populations of Potato virus Y in Japan; based on the analysis of 20 full genomic sequences. J Phytopathol 160: 661-673.
18. Ogawa T, Nakamura S, Sayama M, Ohshima K (2013) Attenuated mutants of Potato virus Y necrotic strain produced by nitrous acid treatment and mutagenesis-in-tissue culture methods. Eur J Plant Pathol 135: 745-760.
19. Ohshima K (2007) Turnip mosaic virus. In: Rao GP, Kumar PL, Holguin-Pena RJ (eds) Characterization, diagnosis & management of plant viruses. Studium Press, Houston, pp 313-330.
20. Ohshima K (2009) Molecular evolution and ecology of Turnip mosaic virus (in Japanese). Plant Protect 63: 21-25.
21. Ohshima K (2012) Plant potyvirus evolution: the survey of the genetic structure of populations (in Japanese). Uirusu 62: 151-160.
22. Ohshima K, Tanaka M, Sako N (1996) The complete nucleotide sequence of turnip mosaic virus RNA Japanese strain. Arch Virol 141: 1991-1997.
23. Ohshima K, Sako K, Hiraishi C, Nakagawa A, Matsuo K, Ogawa T, Shikata E, Sako N (2000) Potato tuber necrotic ringspot disease occurring in Japan: its association with Potato virus Y necrotic strain. Plant Dis 10: 1109-1115.
24. Ohshima K, Yamaguchi Y, Hirota R, Hamamoto T, Tomimura K, Tan Z, Sano T, Azuhata F, Walsh JA, Fletcher J, Chen J, Gera A, Gibbs A (2002) Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J Gen Virol 83: 1511-1521.
25. Ohshima K, Tomitaka Y, Wood JT, Minematsu Y, Kajiyama H, Tomimura K, Gibbs AJ (2007) Patterns of recombination in turnip mosaic virus genomic sequences indicate hotspots of recombination. J Gen Virol 88: 298-315.
26. Ohshima K, Akaishi S, Kajiyama H, Koga R, Gibbs AJ (2010) The evolutionary trajectory of turnip mosaic virus populations adapting to a new host. J Gen Virol 91: 788-801.
27. Seo J-K, Ohshima K, Lee H-G, So M, Choi H-S, Lee S-H, Sohn S-H, Kim K-H (2009) Molecular variability and genetic structure of the population of Soybean mosaic virus based on the analysis of complete genome sequences. Virology 393: 91-103.
28. Tan Z, Wada Y, Chen J, Ohshima K (2004) Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus. J Gen Virol 85: 2683-2696.
29. Tan Z, Gibbs AJ, Tomitaka Y, Sánchez F, Ponz F, Ohshima K (2005) Mutations in Turnip mosaic virus genomes that have adapted Raphanus sativus. J Gen Virol 86: 501-510.
30. Tomimura K, Gibbs AJ, Jenner CE, Walsh JA, Ohshima K (2003) The phylogeny of Turnip mosaic virus; comparisons of 38 genomic sequences reveal a Eurasian origin and a recent 'emergence' in East Asia. Mol Ecol 12: 2099-2111.
31. Tomimura K, Špak J, Katis N, Jenner CE, Walsh JA, Gibbs AJ, Ohshima K (2004) Comparisons of the genetic structure of populations of Turnip mosaic virus in West and East Eurasia. Virology 330: 408-423.
32. Tomitaka Y, Ohshima K (2006) A phylogeographic study of the Turnip mosaic virus population in East Asia reveals an 'emergent' lineage in Japan. Mol Ecol 15: 4437-4457.
33. Tomitaka Y, Yamashita T, Ohshima K (2007) The genetic structure of populations of Turnip mosaic virus in Kyushu and central Honshu, Japan. J Gen Plant Pathol 73: 197-208.