메뉴 건너뛰기




Volumn 124, Issue 1, 2009, Pages 45-55

Molecular characterisation of Turnip mosaic virus isolates from Brassicaceae weeds

Author keywords

Brassicaceae; Evolution; Iran; Phylogeny; Turnip mosaic virus; Weeds

Indexed keywords

ANTIBODY; BIOASSAY; DICOTYLEDON; ENZYME; HOST-PATHOGEN INTERACTION; MOLECULAR ANALYSIS; PHYLOGENETICS; PHYLOGENY; RNA; VIRUS; WEED;

EID: 64049106506     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-008-9390-2     Document Type: Article
Times cited : (25)

References (33)
  • 1
    • 0017365816 scopus 로고
    • Characteristics of the microplate method of enzyme-linked immunosorbent assay for detection of plant viruses
    • DOI:10.1099/0022-1317-34-3-475
    • M. F. Clark A. M. Adams 1977 Characteristics of the microplate method of enzyme-linked immunosorbent assay for detection of plant viruses The Journal of General Virology 34 475 483 DOI:10.1099/0022-1317-34-3-475
    • (1977) The Journal of General Virology , vol.34 , pp. 475-483
    • Clark, M.F.1    Adams, A.M.2
  • 2
    • 0020649886 scopus 로고
    • Establishing homologies in protein sequences
    • DOI:10.1016/S0076-6879(83)91049-2
    • M. O. Dayhoff W. C. Barker L. T. Hunt 1983 Establishing homologies in protein sequences Methods in Enzymology 91 524 545 DOI:10.1016/S0076-6879(83) 91049-2
    • (1983) Methods in Enzymology , vol.91 , pp. 524-545
    • Dayhoff, M.O.1    Barker, W.C.2    Hunt, L.T.3
  • 5
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • DOI:10.2307/2408678
    • J. Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution; International Journal of Organic Evolution 39 783 791 DOI:10.2307/2408678
    • (1985) Evolution; International Journal of Organic Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 7
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
    • (Oxford, England)
    • Gibbs, M. J., Armstrong, J. S., & Gibbs, A. J. (2000). Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics (Oxford, England), 16, 573-582. http://www.anu.edu.au/ BoZo/software/. doi: 10.1093/bioinformatics/16.7.573
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 8
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • T. A. Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symposium Series 41 95 98
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 9
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • DOI:10.1007/BF02101694
    • M. Hasegawa H. Kishino T. Yano 1985 Dating of the human-ape splitting by a molecular clock of mitochondrial DNA Journal of Molecular Evolution 22 160 174 DOI:10.1007/BF02101694
    • (1985) Journal of Molecular Evolution , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 11
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI:10.1007/BF01731581
    • M. Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 16 111 120 DOI:10.1007/BF01731581
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 56549088074 scopus 로고    scopus 로고
    • Occurrence and molecular characterization of Turkish isolates of Turnip mosaic virus
    • doi:10.1111/j.1365-3059.2008.01902.x
    • Korkmaz, S., Tomitaka, Y., Onder, S., & Ohshima, K. (2008). Occurrence and molecular characterization of Turkish isolates of Turnip mosaic virus. Plant Pathology. doi:10.1111/j.1365-3059.2008.01902.x.
    • (2008) Plant Pathology
    • Korkmaz, S.1    Tomitaka, Y.2    Onder, S.3    Ohshima, K.4
  • 13
    • 34548257748 scopus 로고    scopus 로고
    • Genetic and molecular variability of a Turnip mosaic virus population from horseradish (Cochlearia armoracia L.)
    • E. Kozubek W. Irzykowski P. Lehmann 2007 Genetic and molecular variability of a Turnip mosaic virus population from horseradish (Cochlearia armoracia L.) Journal of Applied Genetics 48 3 295 306
    • (2007) Journal of Applied Genetics , vol.48 , Issue.3 , pp. 295-306
    • Kozubek, E.1    Irzykowski, W.2    Lehmann, P.3
  • 14
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • DOI:10.1093/bioinformatics/16.6.562
    • D. Martin E. Rybicki 2000 RDP: detection of recombination amongst aligned sequences Bioinformatics (Oxford, England) 16 562 563 DOI:10.1093/ bioinformatics/16.6.562
    • (2000) Bioinformatics (Oxford, England) , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 15
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignment
    • DOI:10.1093/bioinformatics/bth490
    • D. Martin C. Williamson D. Posada 2005 RDP2: recombination detection and analysis from sequence alignment Bioinformatics (Oxford, England) 21 260 262 DOI:10.1093/bioinformatics/bth490
    • (2005) Bioinformatics (Oxford, England) , vol.21 , pp. 260-262
    • Martin, D.1    Williamson, C.2    Posada, D.3
  • 17
    • 38649128454 scopus 로고    scopus 로고
    • Genetic structure of a population of Potato virus y inducing potato tuber necrotic ringspot disease in Japan; Comparison with North American and European populations
    • DOI:10.1016/j.virusres.2007.09.010
    • T. Ogawa Y. Tomitaka A. Nakagawa K. Ohshima 2008 Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations Virus Research 131 199 212 DOI:10.1016/j.virusres.2007.09.010
    • (2008) Virus Research , vol.131 , pp. 199-212
    • Ogawa, T.1    Tomitaka, Y.2    Nakagawa, A.3    Ohshima, K.4
  • 18
    • 33846176548 scopus 로고    scopus 로고
    • Patterns of recombination in Turnip mosaic virus genomic sequences indicate hotspots of recombination
    • DOI:10.1099/vir.0.82335-0
    • K. Ohshima Y. Tomitaka J. T. Wood Y. Minematsu H. Kajiyama K. Tomimura 2007 Patterns of recombination in Turnip mosaic virus genomic sequences indicate hotspots of recombination The Journal of General Virology 88 298 315 DOI:10.1099/vir.0.82335-0
    • (2007) The Journal of General Virology , vol.88 , pp. 298-315
    • Ohshima, K.1    Tomitaka, Y.2    Wood, J.T.3    Minematsu, Y.4    Kajiyama, H.5    Tomimura, K.6
  • 19
    • 0036272754 scopus 로고    scopus 로고
    • Molecular evolution of Turnip mosaic virus; Evidence of host adaptation, genetic recombination and geographical spread
    • K. Ohshima Y. Yamaguchi R. Hirota T. Hamamoto K. Tomimura Z. Tan 2002 Molecular evolution of Turnip mosaic virus; evidence of host adaptation, genetic recombination and geographical spread The Journal of General Virology 83 1511 1521
    • (2002) The Journal of General Virology , vol.83 , pp. 1511-1521
    • Ohshima, K.1    Yamaguchi, Y.2    Hirota, R.3    Hamamoto, T.4    Tomimura, K.5    Tan, Z.6
  • 20
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computer
    • R. D. M. Page 1996 TreeView: an application to display phylogenetic trees on personal computer Computer Applications in the Biosciences 12 357 358
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 23
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • N. Saitou M. Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Molecular Biology and Evolution 4 406 425
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 24
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by Bootscanning
    • M. O. Salminen J. K. Carr D. S. Burke F. E. McCutchan 1995 Identification of breakpoints in intergenotypic recombinants of HIV type 1 by Bootscanning AIDS Research and Human Retroviruses 11 1423 1425
    • (1995) AIDS Research and Human Retroviruses , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3
  • 25
  • 26
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • K. Strimmer A. von Haeseler 1996 Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies Molecular Biology and Evolution 13 964 969
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 28
    • 0042991439 scopus 로고    scopus 로고
    • The phylogeny of Turnip mosaic virus; Comparisons of thirty-eight genomic sequences reveal a Eurasian origin and a recent 'emergence' in east Asia
    • DOI:10.1046/j.1365-294X.2003.01881.x
    • K. Tomimura A. J. Gibbs C. E. Jenner J. A. Walsh K. Ohshima 2003 The phylogeny of Turnip mosaic virus; comparisons of thirty-eight genomic sequences reveal a Eurasian origin and a recent 'emergence' in east Asia Molecular Ecology 12 2099 2111 DOI:10.1046/j.1365-294X.2003.01881.x
    • (2003) Molecular Ecology , vol.12 , pp. 2099-2111
    • Tomimura, K.1    Gibbs, A.J.2    Jenner, C.E.3    Walsh, J.A.4    Ohshima, K.5
  • 29
    • 9644259085 scopus 로고    scopus 로고
    • Comparisons of the genetic structure of populations of Turnip mosaic virus in west and east Eurasia
    • DOI:10.1016/j.virol.2004.09.040
    • K. Tomimura J. Spak N. Katis C. E. Jenner J. A. Walsh A. J. Gibbs 2004 Comparisons of the genetic structure of populations of Turnip mosaic virus in west and east Eurasia Virology 330 408 423 DOI:10.1016/j.virol.2004.09.040
    • (2004) Virology , vol.330 , pp. 408-423
    • Tomimura, K.1    Spak, J.2    Katis, N.3    Jenner, C.E.4    Walsh, J.A.5    Gibbs, A.J.6
  • 30
    • 0023496733 scopus 로고
    • Epidemiology and control of virus diseases of vegetables
    • DOI:10.1111/j.1744-7348.1987.tb04187.x
    • J. A. Tomlinson 1987 Epidemiology and control of virus diseases of vegetables The Annals of Applied Biology 110 661 681 DOI:10.1111/j.1744-7348. 1987.tb04187.x
    • (1987) The Annals of Applied Biology , vol.110 , pp. 661-681
    • Tomlinson, J.A.1
  • 31
    • 0035114661 scopus 로고    scopus 로고
    • Potyvirus proteins: A wealth of functions
    • DOI:10.1016/S0168-1702(01)00220-9
    • S. Urcuqui-Inchima A-L. Haenni F. Bernardi 2001 Potyvirus proteins: a wealth of functions Virus Research 74 157 175 DOI:10.1016/S0168-1702(01)00220-9
    • (2001) Virus Research , vol.74 , pp. 157-175
    • Urcuqui-Inchima, S.1    Haenni, A.-L.2    Bernardi, F.3
  • 32
    • 0041467319 scopus 로고    scopus 로고
    • Turnip mosaic virus and the quest for durable resistance
    • DOI:10.1046/j.1364-3703.2002.00132.x
    • J. A. Walsh C. E. Jenner 2002 Turnip mosaic virus and the quest for durable resistance Molecular Plant Pathology 3 289 300 DOI:10.1046/j.1364-3703. 2002.00132.x
    • (2002) Molecular Plant Pathology , vol.3 , pp. 289-300
    • Walsh, J.A.1    Jenner, C.E.2
  • 33
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
    • G. F. Weiller 1998 Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences Molecular Biology and Evolution 15 326 335
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 326-335
    • Weiller, G.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.