Improved sensitivity of sedimentary phospholipid analysis resulting from a novel extract cleanup strategy

Organic Geochemistry

Volumn 65, Issue , 2013, Pages 46-52

  Zhu, Rong ^a   Evans, Thomas William ^a   Wörmer, Lars ^a   Lin, Yu Shih ^a,b   Zhu, Chun ^a   Hinrichs, Kai Uwe ^a  

^a UNIVERSITY OF BREMEN   (Germany)

^b NATIONAL SUN YAT SEN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

CLEANUP PROCEDURES; EFFECTIVE REMOVALS; ENVIRONMENTAL MATRIXES; LIQUID CHROMATOGRAPHY-ELECTROSPRAY IONIZATION-MASS SPECTROMETRIES; MICROBIAL COMMUNITIES; PHOSPHOLIPID ANALYSIS; SELECTIVE RETENTION; TOTAL ORGANIC CARBON;

ELECTROSPRAY IONIZATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PHOSPHOLIPIDS; SEDIMENTS; SILICA GEL; SUBMARINE GEOLOGY; ZIRCONIA;

SEDIMENTOLOGY;

CLEANUP; LIQUID CHROMATOGRAPHY; MARINE SEDIMENT; MICROBIAL COMMUNITY; PHOSPHOLIPID; SILICA; TOTAL ORGANIC CARBON;

EID: 84887253251     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2013.10.002     Document Type: Article

References (34)

1. Bobbie R., White D.C. Characterization of benthic microbial community structure by high-resolution gas chromatography of fatty acid methyl esters. Applied and Environment Microbiology 1980, 39:1212-1222.
2. DeLong E.F., Yayanos A.A. Biochemical function and ecological significance of novel bacterial lipids in deep-sea procaryotes. Applied and Environment Microbiology 1986, 51:730-737.
3. D'Hondt, S.L., Jørgensen, B.B., Miller, D.J., Shipboard Scientific Party, 2003. Proceedings of the Ocean Drilling Program, Initial Reports, vol. 201. Ocean Drilling Program, Texas A&M University, College Station, TX. doi:. doi:10.2973/odp.proc.ir.201.2003.
4. Elvert M., Boetius A., Knittel K., Jørgensen B.B. Characterization of specific membrane fatty acids as chemotaxonomic markers for sulfate-reducing bacteria involved in anaerobic oxidation of methane. Geomicrobiology Journal 2003, 20:403-419.
5. Fang J., Barcelona M.J. Structural determination and quantitative analysis of bacterial phospholipids using liquid chromatography/electrospray ionization/mass spectrometry. Journal of Microbiological Methods 1998, 33:23-35.
6. Fang J., Barcelona M.J., Semrau J.D. Characterization of methanotrophic bacteria on the basis of intact phospholipid profiles. FEMS Microbiology Letters 2000, 189:67-72.
7. Fredricks H.F., Hinrichs K.-U. Data report: intact membrane lipids as indicators of subsurface life in cretaceous and paleogene sediments from sites 1257 and 1258. Proceedings of the Ocean Drilling Program, Science Research 2007, 207. 10.2973/odp.proc.sr.207.112.2007.
8. Frostegård Å., Tunlid A., Bååth E. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environment Microbiology 1993, 59:3605-3617.
9. Guckert J.B., Hood M.A., White D.C. Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: increases in the trans/cis ratio and proportions of cyclopropyl fatty acids. Applied and Environment Microbiology 1986, 52:794-801.
10. Harvey H.R., Fallon R.D., Patton J.S. The effect of organic matter and oxygen on the degradation of bacterial membrane lipids in marine sediments. Geochimica et Cosmochimica Acta 1986, 50:795-804.
11. Jiang H., Zhang Y., Ida M., LaFayette A., Fast D.M. Determination of carboplatin in human plasma using HybridSPE-precipitation along with liquid chromatography-tandem mass spectrometry. Journal of Chromatography B 2011, 879:2162-2170.
12. Koga Y., Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Bioscience, Biotechnology, and Biochemistry 2005, 69:2019-2034.
13. Lengger S.K., Hopmans E.C., Sinninghe Damsté J.S., Schouten S. Comparison of extraction and work up techniques for analysis of core and intact polar tetraether lipids from sedimentary environments. Organic Geochemistry 2012, 47:34-40.
14. Lipp J.S., Morono Y., Inagaki F., Hinrichs K.-U. Significant contribution of archaea to extant biomass in marine subsurface sediments. Nature 2008, 454:991-994.
15. Liu X., Lipp J.S., Hinrichs K.-U. Distribution of intact and core GDGTs in marine sediments. Organic Geochemistry 2011, 42:368-375.
16. Logemann J., Graue J., Köster J., Engelen B., Rullkötter J., Cypionka H. A laboratory experiment of intact polar lipid degradation in sandy sediments. Biogeosciences 2011, 8:2547-2560.
17. Mills C.T., Dias R.F., Graham D., Mandernack K.W. Determination of phospholipid fatty acid structures and stable carbon isotope compositions of deep-sea sediments of the Northwest Pacific, ODP site 1179. Marine Chemistry 2006, 98:197-209.
18. Moriarty M., Lee A., O'Connell B., Lehane M., Keeley H., Furey A. The application and validation of HybridSPE-Precipitation cartridge technology for the rapid clean-up of serum matrices (from phospholipids) for the clinical analysis of serotonin, dopamine and melatonin. Chromatographia 2012, 75:1257-1269.
19. Peterse F., Hopmans E.C., Schouten S., Mets A., Rijpstra I.C., Sinninghe Damsté J.S. Identification and distribution of intact polar branched tetraether lipids in peat and soil. Organic Geochemistry 2011, 42:1007-1015.
20. Pitcher A., Hopmans E.C., Schouten S., Sinninghe Damsté J.S. Separation of core and intact polar archaeal tetraether lipids using silica columns: insights into living and fossil biomass contributions. Organic Geochemistry 2009, 40:12-19.
21. Pucci V., Di Palma S., Alfieri A., Bonelli F., Monteagudo E. A novel strategy for reducing phospholipids-based matrix effect in LC-ESI-MS bioanalysis by means of HybridSPE. Journal of Pharmaceutical and Biomedical Analysis 2009, 50:867-871.
22. Rossel P.E., Elvert M., Ramette A., Boetius A., Hinrichs K.-U. Factors controlling the distribution of anaerobic methanotrophic communities in marine environments: evidence from intact polar membrane lipids. Geochimica et Cosmochimica Acta 2011, 75:164-184.
23. Rütters H., Sass H., Cypionka H., Rullkötter J. Phospholipid analysis as a tool to study complex microbial communities in marine sediments. Journal of Microbiol Methods 2002, 48:149-160.
24. Schubotz F., Wakeham S.G., Lipp J.S., Fredricks H.F., Hinrichs K.-U. Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environmental Microbiology 2009, 11:2720-2734.
25. Sturt H.F., Summons R.E., Smith K., Elvert M., Hinrichs K.-U. Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry-new biomarkers for biogeochemistry and microbial ecology. Rapid Communications in Mass Spectrometry 2004, 18:617-628.
26. Sundh I., Nilsson M., Borga P. Variation in microbial community structure in two boreal peatlands as determined by analysis of phospholipid fatty acid profiles. Applied and Environment Microbiology 1997, 63:1476-1482.
27. Vestal J.R., White D.C. Lipid analysis in microbial ecology. BioScience 1989, 39:535-541.
28. White D., Davis W., Nickels J., King J., Bobbie R. Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 1979, 40:51-62.
29. Wörmer L., Lipp J.S., Schröder J.M., Hinrichs K.-U. Application of two new LC-ESI-MS methods for improved detection of intact polar lipids (IPLs) in environmental samples. Organic Geochemistry 2013, 59:10-21.
30. Xie S., Lipp J.S., Wegener G., Ferdelman T.G., Hinrichs K.-U. Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations. Proceedings of the National Academy of Sciences USA 2013, 110:6010-6014.
31. Zelles L., Bai Q.Y., Beck T., Beese F. Signature fatty acids in phospholipids and lipopolysaccharides as indicators of microbial biomass and community structure in agricultural soils. Soil Biology & Biochemistry 1992, 24:317-323.
32. Zhu, C., Lipp, J.S., Wörmer, L., Becjer, K.W., Schröder, J., Hinrichs, K.-U., 2013. Comprehensive glycerol ether lipid fingerprints through a novel reverse-phase liquid chromatography-mass spectrometry protocol. Organic Geochemistry (in press).
33. Zink K.G., Wilkes H., Disko U., Elvert M., Horsfield B. Intact phospholipids-microbial "life markers'' in marine deep subsurface sediments. Organic Geochemistry 2003, 34:755-769.
34. Zink K.G., Mangelsdorf K. Efficient and rapid method for extraction of intact phospholipids from sediments combined with molecular structure elucidation using LC-ESI-MS-MS analysis. Analytical and Bioanalytical Chemistry 2004, 380:798-812.