Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Sen, Arnab ^a   Beauchemin, Nicholas ^b   Bruce, David ^c   Chain, Patrick ^c   Chen, Amy ^d   Davenport, Karen Walston ^c   Deshpande, Shweta ^d   Detter, Chris ^c   Furnholm, Teal ^b   Ghodbhane Gtari, Faten ^b,e   Goodwin, Lynne ^c   Gtari, Maher ^b,e   Han, Cliff ^c   Han, James ^d   Huntemann, Marcel ^d   Ivanova, Natalia ^d   Kyrpides, Nikos ^d   Land, Miriam L ^f   Markowitz, Victor ^d   Mavrommatis, Kostas ^d   Nolan, Matt ^d   Nouioui, Imen ^e   Pagani, Ioanna ^d   Pati, Amrita ^d   Pitluck, Sam ^d   Santos, Catarina L ^g   Sur, Saubashya ^g   Szeto, Ernest ^d   Tavares, Fernando ^h   Teshima, Hazuki ^c   Thakur, Subarna ^a   Wall, Luis ⁱ   Woyke, Tanja ^d   Wishart, Jessie ^b,j   Tisa, Louis S ^b   more..

^a UNIVERSITY OF NORTH BENGAL   (India)

^b UNIVERSITY OF NEW HAMPSHIRE   (United States)

^c LOS ALAMOS NATIONAL LABORATORY   (United States)

^d DOE JOINT GENOME INSTITUTE   (United States)

^e UNIVERSITY OF TUNIS EL MANAR   (Tunisia)

^f OAK RIDGE NATIONAL LABORATORY   (United States)

^g UNIVERSITY OF PORTO   (Portugal)

^h CENTRO DE INVESTIGAÇÃO EM BIODIVERSIDADE E RECURSOS GENÉTICOS   (Portugal)

ⁱ UNIVERSIDAD NACIONAL DE QUILMES   (Argentina)

^j OREGON STATE UNIVERSITY   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84887227095     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00103-13     Document Type: Article

References (15)

1. Benson DR, Silvester WB. 1993. Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Microbiol. Rev. 57:293-319.
2. Schwencke J, Caru M. 2001. Advances in actinorhizal symbiosis: host plant-Frankia interactions, biology, and applications in arid land reclamation. A review. Arid Land Res. Manag. 15:285-327.
3. Chaia EE, Wall LG, Huss-Danell K. 2010. Life in soil by actinorhizal root nodule endophyte Frankia. A review. Symbiosis 51:201-226.
4. Normand P, Orso S, Cournoyer B, Jeannin P, Chapelon C, Dawson JO, Evtushenko L, Mirsra AK. 1996. Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae. Int. J. Syst. Bacteriol. 46:1-9.
5. Cournoyer B, Lavire C. 1999. Analysis of Frankia evolution radiation using glnII sequences. FEMS Microbiol. Lett. 117:29-34.
6. Nouioui I, Ghodhbane-Gtari F, Beauchemin NJ, Tisa LS, Gtari M. 2011. Phylogeny of members of the Frankia genus based on gyrB, nifH and glnII sequences. Antonie Van Leeuwenhoek 100:579-587.
7. Ghodhbane-Gtari F, Nouioui I, Chair M, Boudabous A, Gtari M. 2010. 16S-23S rRNA intergenic spacer region variability in the genus Frankia. Microb. Ecol. 60:487-495.
8. Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, Francino MP, Goltsman E, Huang Y, Kopp OR, Labarre L, Lapidus A, Lavire C, Marechal J, Martinez M, Mastronunzio JE, Mullin BC, Niemann J, Pujic P, Rawnsley T, Rouy Z, Schenowitz C, Sellstedt A, Tavares F, Tomkins JP, Vallenet D, Valverde C, Wall LG, Wang Y, Medigue C, Benson DR. 2007. Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Res. 17:7-15.
9. Persson T, Benson DR, Normand P, Vanden Heuvel B, Pujic P, Chertkov O, Teshima H, Bruce DC, Detter C, Tapia R, Han S, Han J, Woyke T, Pitlock S, Pennacchio L, Nolan M, Ivanova N, Pati A, Land ML, Pawlowski K, Berry AM. 2011. Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata. J. Bacteriol. 193:7017-7018.
10. -) isolate from Coriaria nepalensis. Genome Announc. 1(2):e00085-13. doi:10.1128/genomeA.00085-13.
11. Hafeez F, Akkermans ADL, Chaudhary AH. 1984. Morphology, physiology, and infectivity of two Frankia isolates, An1 and An2 from root nodules of Alnus nitida. Plant Soil 78:45-59.
12. Richards JW, Krumholz GD, Chval MS, Tisa LS. 2002. Heavy metal resistance patterns of Frankia strains. Appl. Environ. Microbiol. 68: 923-927.
13. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y-J, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim J-B, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, Dade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
14. Bennett S. 2004. Solexa Ltd. Pharmacogenomics 5:433-438.
15. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.