Cellulolytic Potential of Thermophilic Species from Four Fungal Orders

AMB Express

Volumn 3, Issue , 2013, Pages 1-10

  Busk, Peter Kamp ^a   Lange, Lene ^a  

^a AALBORG UNIVERSITY   (Denmark)

Author keywords

Cellobiohydrolase; Cellulolytic potential; Endoglucanase; Thermophilic fungi

Indexed keywords

CELLULASE; CELLULOSE; GLUCAN SYNTHASE;

ARTICLE; BIOMASS CONVERSION; CELLULOLYSIS; CHAETOMIUM; CHAETOMIUM SENEGALENSE; DNA PURIFICATION; EUROTIALES; FUNGAL BIOMASS; FUNGUS; GENE SEQUENCE; LYSIS; MELANOCARPUS ALBOMYCES; MUCORALES; NONHUMAN; NUCLEOTIDE SEQUENCE; ONYGENALES; PH; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA PURIFICATION; SORDARIALES; TALAROMYCES; TALAROMYCES LEYCETTANUS; THERMOMUCOR INDICAE SEUDATICAE; THERMOPHILE; THERMOPHILIC FUNGUS; THERMOSTABILITY;

EID: 84887209898     PISSN: None     EISSN: 21910855     Source Type: Journal    
DOI: 10.1186/2191-0855-3-47     Document Type: Article

References (50)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Andersen MD, Busk PK, Svendsen I, Møller BL (2000) Cytochromes P-450 from cassava (Manihot esculenta Crantz) catalyzing the first steps in the biosynthesis of the cyanogenic glucosides linamarin and lotaustralin. Cloning, functional expression in Pichia pastoris, and substrate specificity of the isolated recombinant enzymes. J Biol Chem 275:1966-1975
3. Arantes V, Milagres AMF, Filley TR, Goodell B (2011) Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions. J Ind Microbiol Biotechnol 38:541-555
4. Balcells I, Cirera S, Busk PK (2011) Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers. BMC Biotechnol 11:70
5. Banerjee G, Car S, Scott-Craig JS, Borrusch MS, Aslam N, Walton JD (2010) Synthetic enzyme mixtures for biomass deconstruction: production and optimization of a core set. Biotechnol Bioeng 106:707-20
6. Battaglia E, Benoit I, van den Brink J, Wiebenga A, Coutinho PM, Henrissat B, de Vries RP (2011) Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level. BMC Genomics 12:38
7. Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A (2011) Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nat Biotech 29:922-927
8. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, Lao KQ, Livak KJ, Guegler KJ (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33:e179
9. Dashtban M, Schraft H, Qin W (2009) Fungal bioconversion of lignocellulosic residues; opportunities & perspectives. Int J Biol Sci 5:578-595
10. Dashtban M, Maki M, Leung KT, Mao C, Qin W (2010) Cellulase activities in biomass conversion: measurement methods and comparison. Crit Rev Biotechnol 30:302-309
11. Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36: W465-W469
12. Gomes I, Gomes J, Gomes DJ, Steiner W (2000) Simultaneous production of high activities of thermostable endoglucanase and β-glucosidase by the wild thermophilic fungus Thermoascus aurantiacus. Appl Microbiol Biotechnol 53:461-468
13. Harris PV, Welner D, McFarland KC, Re E, Navarro Poulsen JC, Brown K, Salbo R, Ding H, Vlasenko E, Merino S, Xu F, Cherry J, Larsen S, Lo Leggio L (2010) Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Biochemistry 49:3305-3316
14. Hayashida S, Mo K (1986) Production and characteristics of avicel-disintegrating endoglucanase from a protease-negative Humicola grisea var. thermoidea mutant. Appl Environ Microbiol 51:1041-1046
15. Henrissat B, Davies G (1997) Structural and sequence-based classification of glycoside hydrolases. Curr Opin Struct Biol 7:637-644
16. Herr D (1979) Secretion of cellulase and β-glucosidase by Trichoderma viride ITCC-1433 in submerged culture on different substrates. Biotechnol Bioeng 21:1361-1371
17. Hong J, Tamaki H, Yamamoto K, Kumagai H (2003) Cloning of a gene encoding thermostable cellobiohydrolase from Thermoascus aurantiacus and its expression in yeast. Appl Microbiol Biotechnol 63:42-50
18. Hong J, Tamaki H, Kumagai H (2007) Cloning and functional expression of thermostable β-glucosidase gene from Thermoascus aurantiacus. Appl Microbiol Biotechnol 73:1331-1339
19. Johri BN, Satyanarayana T, Olsen J (1999) Thermophilic moulds in biotechnology, 1st edn. Kluwer Academic Publishers, Dordrecht, The Netherlands
20. Karmakar M, Ray RR (2011) Current trends in research and application of microbial cellulases. Res J Microbiol 6:41-53
21. Khandke KM, Vithayathil PJ, Murthy SK (1989) Purification of xylanase, β-glucosidase, endocellulase, and exocellulase from a thermophilic fungus, Thermoascus aurantiacus. Arch Biochem Biophys 274:491-500
22. Kuhad RC, Gupta R, Singh A (2011) Microbial cellulases and their industrial applications. Enzyme Res 2011:1-10
23. Kumar S, Satyanarayana T (2003) Purification and kinetics of a raw starch-hydrolyzing, thermostable, and neutral glucoamylase of the thermophilic mold Thermomucor indicae-seudaticae. Biotechnol Prog 19:936-944
24. Langston JA, Shaghasi T, Abbate E, Xu F, Vlasenko E, Sweeney MD (2011) Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61. Appl Environ Microbiol 77:7007-7015
25. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948
26. Maheshwari R, Kamalam PT (1985) Isolation and culture of a thermophilic fungus, Melanocarpus albomyces, and factors influencing the production and activity of xylanase. J Gen Microbiol 131:3017-3027
27. Maheshwari R, Bharadwaj G, Bhat MK (2000) Thermophilic fungi: their physiology and enzymes. Microbiol Mol Biol Rev 64:461-488
28. Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH (2011) CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res 39:D225-D229
29. Markowska-Szczupak A, Ulfig K, Janda K (2012) The growth of Thermomyces lanuginosus (TSIKL.) isolates from garden composts and coffee beans on cellulose substrates and xylan at various water activity. Arch Environ Protection 38:73-80
30. McClendon SD, Baath T, Petzold CJ, Adams PD, Simmons BA, Singer SW (2012) Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions. Biotechnology for Biofuels 5:54
31. McIlvaine TC (1921) A buffer solution for colorimetric comparison. J Biol Chem 49:183-186
32. Morgenstern I, Powlowski J, Ishmael N, Darmond C, Marqueteau S, Moisan MC, Quenneville G, Tsang A (2012) A molecular phylogeny of thermophilic fungi. Fungal Biol 116:489-502
33. Murray P, Aro N, Collins C, Penttilä M, Saloheimo M, Tuohy M (2004) Expression in Trichoderma reesei and characterisation of a thermostable family 3 β glucosidase from the moderately thermophilic fungus Talaromyces emersonii. Protein Expr Purif 38:248-257
34. Ögel ZB, Yarangümeli K, Dü H, Ifrij I (2001) Submerged cultivation of Scytalidium thermophilum on complex lignocellulosic biomass for endoglucanase production. Enzyme Microb Technol 28:689-695
35. Parry NJ, Beever DE, Owen E, Vandenberghe I, Van Beeumen J, Bhat MK (2001) Biochemical characterization and mechanism of action of a thermostable β-glucosidase purified from Thermoascus aurantiacus. Biochem J 353:117-127
36. Parry NJ, Beever DE, Owen E, Nerinckx W, Claeyssens M, Van Beeumen J, Bhat MK (2002) Biochemical characterization and mode of action of a thermostable endoglucanase purified from Thermoascus aurantiacus. Arch Biochem Biophys 404:243-253
37. Poças-Fonseca MJ, Silva-Pereira I, Rocha BB, De Azevedo M (2000) Substrate-dependent differential expression of Humicola grisea var. thermoidea cellobiohydrolase genes. Can J Microbiol 46:749-752
38. Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, Johansen KS, Krogh KB, Jørgensen CI, Tovborg M, Anthonsen A, Tryfona T, Walter CP, Dupree P, Xu F, Davies GJ, Walton PH (2011) Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Proc Natl Acad Sci USA 108:15079-15084
39. Rineau F, Roth D, Shah F, Smits M, Johansson T, Canbäck B, Olsen PB, Persson P, Grell MN, Lindquist E, Grigoriev IV, Lange L, Tunlid A (2012) The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry. Environ Microbiol 14:1477-1487
40. Romanelli RA, Houston CW, Barnett SM (1975) Studies on thermophilic cellulolytic fungi. Appl Microbiol 30:276-281
41. Roy SK, Dey SK, Raha SK, Chakrabarty SL (1990) Purification and properties of an extracellular endoglucanase from Myceliophthora thermophila D-14 (ATCC 48104). J Gen Microbiol 136:1967-1971
42. Takashima S, Iikura H, Nakamura A, Hidaka M, Masaki H, Uozumi T (1999) Comparison of gene structures and enzymatic properties between two endoglucanases from Humicola grisea. J Biotechnol 67:85-97
43. Vanden Wymelenberg A, Denman S, Dietrich D, Bassett J, Yu X, Atalla R, Predki P, Rudsander U, Teeri TT, Cullen D (2002) Transcript Analysis of Genes Encoding a Family 61 Endoglucanase and a Putative Membrane-Anchored Family 9 Glycosyl Hydrolase from Phanerochaete chrysosporium. Appl Environ Microbiol 68:5765-5768
44. Venturi LL, de Polizeli M, Terenzi L, Furriel HF, Rdos P, Jorge JA (2002) Extracellular β-D-glucosidase from Chaetomium thermophilum var. coprophilum: production, purification and some biochemical properties. J Basic Microbiol 42:55-66
45. Viikari L, Alapuranen M, Puranen T, Vehmaanperä J, Siika-Aho M (2007) Thermostable enzymes in lignocellulose hydrolysis. Adv Biochem Eng Biotechnol 108:121-145
46. Voutilainen SP, Puranen T, Siika-Aho M, Lappalainen A, Alapuranen M, Kallio J, Hooman S, Viikari L, Vehmaanperä J, Koivula A (2008) Cloning, expression, and characterization of novel thermostable family 7 cellobiohydrolases. Biotechnol Bioeng 101:515-528
47. Voutilainen SP, Murray PG, Tuohy MG, Koivula A (2010) Expression of Talaromyces emersonii cellobiohydrolase Cel7A in Saccharomyces cerevisiae and rational mutagenesis to improve its thermostability and activity. Protein Eng Des Sel 23:69-79
48. Westereng B, Ishida T, Vaaje-Kolstad G, Wu M, Eijsink VG, Igarashi K, Samejima M, Ståhlberg J, Horn SJ, Sandgren M (2011) The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose. PLoS ONE 6:e27807
49. Wojtczak G, Breuil C, Yamada J, Saddler JN (1987) A comparison of the thermostability of cellulases from various thermophilic fungi. Appl Microbiol Biotechnol 27:82-87
50. Zhang YHP, Hong J, Ye X (2009) Cellulase assays. Methods Mol Biol 581:213-231