-
1
-
-
0037031561
-
AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides
-
Masuda S, Bauer CE. 2002. AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides. Cell 110:613-623.
-
(2002)
Cell
, vol.110
, pp. 613-623
-
-
Masuda, S.1
Bauer, C.E.2
-
2
-
-
0036804709
-
BLUF: A novel FAD-binding domain involved in sensory transduction in microorganisms
-
Gomelsky M, Klug G. 2002. BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms. Trends Biochem. Sci. 27:497-500.
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 497-500
-
-
Gomelsky, M.1
Klug, G.2
-
3
-
-
84872256330
-
The evolution of flavin-binding photoreceptors: An ancient chromophore serving trendy blue-light sensors
-
Losi A, Gärtner W. 2012. The evolution of flavin-binding photoreceptors: an ancient chromophore serving trendy blue-light sensors. Annu. Rev. Plant Biol. 63:49-72.
-
(2012)
Annu. Rev. Plant Biol
, vol.63
, pp. 49-72
-
-
Losi, A.1
Gärtner, W.2
-
4
-
-
33645235288
-
Light induced structural changes of a full-length protein and its BLUF domain in YcgF(Blrp), a blue-light sensing protein that uses FAD (BLUF)
-
Hasegawa K, Masuda S, Ono TA. 2006. Light induced structural changes of a full-length protein and its BLUF domain in YcgF(Blrp), a blue-light sensing protein that uses FAD (BLUF). Biochemistry 45:3785-3793.
-
(2006)
Biochemistry
, vol.45
, pp. 3785-3793
-
-
Hasegawa, K.1
Masuda, S.2
Ono, T.A.3
-
5
-
-
12944308816
-
Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli
-
Rajagopal S, Key JM, Purcell EB, Boerema DJ, Moffat K. 2004. Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli. Photochem. Photobiol. 80:542-547.
-
(2004)
Photochem. Photobiol
, vol.80
, pp. 542-547
-
-
Rajagopal, S.1
Key, J.M.2
Purcell, E.B.3
Boerema, D.J.4
Moffat, K.5
-
6
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RL, Gomelsky M, Schlichting I. 2009. Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature 459:1015-1018.
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.1
Hartmann, E.2
Griese, J.J.3
Beitlich, T.4
Kirienko, N.V.5
Ryjenkov, D.A.6
Reinstein, J.7
Shoeman, R.L.8
Gomelsky, M.9
Schlichting, I.10
-
7
-
-
84860008604
-
PpsR, a regulator of heme and bacteriochlorophyll biosynthesis, is a heme-sensing protein
-
Yin L, Dragnea V, Bauer CE. 2012. PpsR, a regulator of heme and bacteriochlorophyll biosynthesis, is a heme-sensing protein. J. Biol. Chem. 287:13850-13858.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 13850-13858
-
-
Yin, L.1
Dragnea, V.2
Bauer, C.E.3
-
8
-
-
33748961329
-
Redox properties of the Rhodobacter sphaeroides transcriptional regulatory proteins PpsR and AppA
-
Kim SK, Mason JT, Knaff DB, Bauer CE, Setterdahl AT. 2006. Redox properties of the Rhodobacter sphaeroides transcriptional regulatory proteins PpsR and AppA. Photosynth. Res. 89:89-98.
-
(2006)
Photosynth. Res
, vol.89
, pp. 89-98
-
-
Kim, S.K.1
Mason, J.T.2
Knaff, D.B.3
Bauer, C.E.4
Setterdahl, A.T.5
-
10
-
-
34248328266
-
A haem cofactor is required for redox and light signalling by the AppA protein of Rhodobacter sphaeroides
-
Han Y, Meyer MH, Keusgen M, Klug G. 2007. A haem cofactor is required for redox and light signalling by the AppA protein of Rhodobacter sphaeroides. Mol. Microbiol. 64:1090-1104.
-
(2007)
Mol. Microbiol
, vol.64
, pp. 1090-1104
-
-
Han, Y.1
Meyer, M.H.2
Keusgen, M.3
Klug, G.4
-
12
-
-
78650345258
-
A Q63E Rhodobacter sphaeroides AppA BLUF domain mutant is locked in a pseudo-light-excited signaling state
-
Dragnea V, Arunkumar AI, Lee CW, Giedroc DP, Bauer CE. 2010. A Q63E Rhodobacter sphaeroides AppA BLUF domain mutant is locked in a pseudo-light-excited signaling state. Biochemistry 49:10682-10690.
-
(2010)
Biochemistry
, vol.49
, pp. 10682-10690
-
-
Dragnea, V.1
Arunkumar, A.I.2
Lee, C.W.3
Giedroc, D.P.4
Bauer, C.E.5
-
13
-
-
70350703393
-
Spectroscopic studies of the AppA BLUF domain from Rhodobacter sphaeroides: Addressing movement of tryptophan 104 in the signaling state
-
Dragnea V, Arunkumar AI, Yuan H, Giedroc DP, Bauer CE. 2009. Spectroscopic studies of the AppA BLUF domain from Rhodobacter sphaeroides: addressing movement of tryptophan 104 in the signaling state. Biochemistry 48:9969-9979.
-
(2009)
Biochemistry
, vol.48
, pp. 9969-9979
-
-
Dragnea, V.1
Arunkumar, A.I.2
Yuan, H.3
Giedroc, D.P.4
Bauer, C.E.5
-
14
-
-
0028769662
-
How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase
-
Drennan CL, Huang S, Drummond JT, Matthews RG, Lidwig ML. 1994. How a protein binds B12: a 3.0 A X-ray structure of B12-binding domains of methionine synthase. Science 266:1669-1674.
-
(1994)
Science
, vol.266
, pp. 1669-1674
-
-
Drennan, C.L.1
Huang, S.2
Drummond, J.T.3
Matthews, R.G.4
Lidwig, M.L.5
-
15
-
-
0032515071
-
CrtJ bound to distant binding sites interacts cooperatively to aerobically repress photopigment biosynthesis and light harvesting II gene expression in Rhodobacter capsulatus
-
Elsen S, Ponnampalam SN, Bauer CE. 1998. CrtJ bound to distant binding sites interacts cooperatively to aerobically repress photopigment biosynthesis and light harvesting II gene expression in Rhodobacter capsulatus. J. Biol. Chem. 273:30762-30769.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 30762-30769
-
-
Elsen, S.1
Ponnampalam, S.N.2
Bauer, C.E.3
-
16
-
-
0030747910
-
DNA binding characteristics of CrtJ. A redox-responding repressor of bacteriochlorophyll, carotenoid, and light harvesting-II gene expression in Rhodobacter capsulatus
-
Ponnampalam SN, Bauer CE. 1997. DNA binding characteristics of CrtJ. A redox-responding repressor of bacteriochlorophyll, carotenoid, and light harvesting-II gene expression in Rhodobacter capsulatus. J. Biol. Chem. 272:18391-18396.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 18391-18396
-
-
Ponnampalam, S.N.1
Bauer, C.E.2
-
17
-
-
84880165940
-
A ternary AppA-PpsR-DNA complex mediates light regulation of photosynthesis-related gene expression
-
Winkler A, Heintz U, Lindner R, Reinstein J, Shoeman RL, Schlichting I. 2013. A ternary AppA-PpsR-DNA complex mediates light regulation of photosynthesis-related gene expression. Nat. Struct. Mol. Biol. 20: 859-867.
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 859-867
-
-
Winkler, A.1
Heintz, U.2
Lindner, R.3
Reinstein, J.4
Shoeman, R.L.5
Schlichting, I.6
-
18
-
-
37349008891
-
Progranulin: Normal function and role in neurodegeneration
-
Eriksen JL, Mackenzie IR. 2008. Progranulin: normal function and role in neurodegeneration. J. Neurochem. 104:287-297.
-
(2008)
J. Neurochem
, vol.104
, pp. 287-297
-
-
Eriksen, J.L.1
Mackenzie, I.R.2
-
19
-
-
0029780955
-
The hairpin stack fold, a novel protein architecture for a new family of protein growth factors
-
Hrabal R, Chen Z, James S, Bennett HP, Ni F. 1996. The hairpin stack fold, a novel protein architecture for a new family of protein growth factors. Nat. Struct. Biol. 3:747-752.
-
(1996)
Nat. Struct. Biol
, vol.3
, pp. 747-752
-
-
Hrabal, R.1
Chen, Z.2
James, S.3
Bennett, H.P.4
Ni, F.5
-
20
-
-
0001540727
-
Analysis of mRNAs that accumulate in response to low temperature identifies a thiol protease gene in tomato
-
Schaffer MA, Fischer RL. 1988. Analysis of mRNAs that accumulate in response to low temperature identifies a thiol protease gene in tomato. Plant Physiol. 87:431-436.
-
(1988)
Plant Physiol
, vol.87
, pp. 431-436
-
-
Schaffer, M.A.1
Fischer, R.L.2
-
21
-
-
0026095842
-
Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains)
-
Watanabe H, Abe K, Emori Y, Hosoyama H, Arai S. 1991. Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains). J. Biol. Chem. 266:16897-16902.
-
(1991)
J. Biol. Chem
, vol.266
, pp. 16897-16902
-
-
Watanabe, H.1
Abe, K.2
Emori, Y.3
Hosoyama, H.4
Arai, S.5
-
22
-
-
0026952853
-
Temporal and spatial expression of a thiolprotease gene during pea ovary senescence, and its regulation by gibberellin
-
Granell A, Harris N, Pisabarro AG, Carbonell J. 1992. Temporal and spatial expression of a thiolprotease gene during pea ovary senescence, and its regulation by gibberellin. Plant J. 2:907-915.
-
(1992)
Plant J
, vol.2
, pp. 907-915
-
-
Granell, A.1
Harris, N.2
Pisabarro, A.G.3
Carbonell, J.4
-
23
-
-
0028923541
-
Alignment/phylogeny of the papain superfamily of cysteine proteases
-
Berti PJ, Storer AC. 1995. Alignment/phylogeny of the papain superfamily of cysteine proteases. J. Mol. Biol. 246:273-283.
-
(1995)
J. Mol. Biol
, vol.246
, pp. 273-283
-
-
Berti, P.J.1
Storer, A.C.2
-
24
-
-
0037984816
-
Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: A novel photocycle involving flavin stacking with an aromatic amino acid
-
Kraft BJ, Masuda S, Kikuchi J, Dragnea V, Tollin G, Zaleski JM, Bauer CE. 2003. Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: a novel photocycle involving flavin stacking with an aromatic amino acid. Biochemistry 42:6726-6734.
-
(2003)
Biochemistry
, vol.42
, pp. 6726-6734
-
-
Kraft, B.J.1
Masuda, S.2
Kikuchi, J.3
Dragnea, V.4
Tollin, G.5
Zaleski, J.M.6
Bauer, C.E.7
-
25
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier FW. 2005. Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif. 41:207-234.
-
(2005)
Protein Expr. Purif
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
26
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. 2007. Phaser crystallographic software. J. Appl. Crystallogr. 40: 658-674.
-
(2007)
J. Appl. Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
27
-
-
76449098262
-
PHENIX: A comprehensive Pythonbased system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. 2010. PHENIX: a comprehensive Pythonbased system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66:213-221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
29
-
-
40549098798
-
Direct hemin transfer from IsdA to IsdC in the iron-regulated surface determinant (Isd) heme acquisition system of Staphylococcus aureus
-
Liu M, Tanaka WN, Zhu H, Xie G, Dooley DM, Lei B. 2008. Direct hemin transfer from IsdA to IsdC in the iron-regulated surface determinant (Isd) heme acquisition system of Staphylococcus aureus. J. Biol. Chem. 283:6668-6676.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 6668-6676
-
-
Liu, M.1
Tanaka, W.N.2
Zhu, H.3
Xie, G.4
Dooley, D.M.5
Lei, B.6
-
30
-
-
0027918107
-
Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation
-
Tang XJ, Thibault P, Boyd RK. 1993. Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation. Anal. Chem. 65:2824-2834.
-
(1993)
Anal. Chem
, vol.65
, pp. 2824-2834
-
-
Tang, X.J.1
Thibault, P.2
Boyd, R.K.3
-
31
-
-
0033565832
-
Role of accurate mass measurement (10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
Clauser KR, Baker P, Burlingame AL. 1999. Role of accurate mass measurement (10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal. Chem. 71:2871-2882.
-
(1999)
Anal. Chem
, vol.71
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
32
-
-
0000323238
-
A comparison of keV atom bombardment mass spectra of peptides obtained with a two-sector mass spectrometer with those obtained from a four sector mass spectrometer
-
Martin SA, Biemann K. 1987. A comparison of keV atom bombardment mass spectra of peptides obtained with a two-sector mass spectrometer with those obtained from a four sector mass spectrometer. Int. J. Mass Spectrom. Ion Processes 78:213-228.
-
(1987)
Int. J. Mass Spectrom. Ion Processes
, vol.78
, pp. 213-228
-
-
Martin, S.A.1
Biemann, K.2
|