-
1
-
-
0029093864
-
AppA, a novel gene encoding a trans-acting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1
-
Gomelsky, M. and Kaplan, S. (1995) appA, a novel gene encoding a trans-acting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1 J. Bacteriol. 177, 4609-4618
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4609-4618
-
-
Gomelsky, M.1
Kaplan, S.2
-
2
-
-
2442559284
-
Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of Synechocystis sp. PCC6803
-
Masuda, S., Hasegawa, K., Ishii, A., and Ono, T. A. (2004) Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of Synechocystis sp. PCC6803 Biochemistry 43, 5304-5313
-
(2004)
Biochemistry
, vol.43
, pp. 5304-5313
-
-
Masuda, S.1
Hasegawa, K.2
Ishii, A.3
Ono, T.A.4
-
3
-
-
9744258714
-
Structural intermediate in the photocycle of a BLUF (sensor of blue light using FAD) protein Slr1694 in a cyanobacterium Synechocystis sp. PCC6803
-
Hasegawa, K., Masuda, S., and Ono, T. A. (2004) Structural intermediate in the photocycle of a BLUF (sensor of blue light using FAD) protein Slr1694 in a cyanobacterium Synechocystis sp. PCC6803 Biochemistry 43, 14979-14986
-
(2004)
Biochemistry
, vol.43
, pp. 14979-14986
-
-
Hasegawa, K.1
Masuda, S.2
Ono, T.A.3
-
4
-
-
18144372698
-
Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain
-
Kita, A., Okajima, K., Morimoto, Y., Ikeuchi, M., and Miki, K. (2005) Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain J. Mol. Biol. 349, 1-9
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 1-9
-
-
Kita, A.1
Okajima, K.2
Morimoto, Y.3
Ikeuchi, M.4
Miki, K.5
-
5
-
-
12944308816
-
Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli
-
Rajagopal, S., Key, J. M., Purcell, E. B., Boerema, D. J., and Moffat, K. (2004) Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli Photochem. Photobiol. 80, 542-547
-
(2004)
Photochem. Photobiol.
, vol.80
, pp. 542-547
-
-
Rajagopal, S.1
Key, J.M.2
Purcell, E.B.3
Boerema, D.J.4
Moffat, K.5
-
6
-
-
0037186598
-
A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis
-
Iseki, M., Matsunaga, S., Murakami, A., Ohno, K., Shiga, K., Yoshida, K., Sugai, M., Takahashi, T., Hori, T., and Watanabe, M. (2002) A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis Nature 415, 1047-1051
-
(2002)
Nature
, vol.415
, pp. 1047-1051
-
-
Iseki, M.1
Matsunaga, S.2
Murakami, A.3
Ohno, K.4
Shiga, K.5
Yoshida, K.6
Sugai, M.7
Takahashi, T.8
Hori, T.9
Watanabe, M.10
-
7
-
-
0032567446
-
AppA, a redox regulator of photosystem formation in Rhodobacter sphaeroides 2.4.1, is a flavoprotein- Identification of a novel FAD binding domain
-
Gomelsky, M. and Kaplan, S. (1998) AppA, a redox regulator of photosystem formation in Rhodobacter sphaeroides 2.4.1, is a flavoprotein - Identification of a novel FAD binding domain J. Biol. Chem. 273, 35319-35325
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 35319-35325
-
-
Gomelsky, M.1
Kaplan, S.2
-
8
-
-
0037031561
-
AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides
-
Masuda, S. and Bauer, C. E. (2002) AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides Cell 110, 613-623
-
(2002)
Cell
, vol.110
, pp. 613-623
-
-
Masuda, S.1
Bauer, C.E.2
-
9
-
-
77949391650
-
Temperature-sensitive reaction of a photosensor protein YcgF: Possibility of a role of temperature sensor
-
Nakasone, Y., Ono, T. A., Ishii, A., Masuda, S., and Terazima, M. (2010) Temperature-sensitive reaction of a photosensor protein YcgF: possibility of a role of temperature sensor Biochemistry 49, 2288-2296
-
(2010)
Biochemistry
, vol.49
, pp. 2288-2296
-
-
Nakasone, Y.1
Ono, T.A.2
Ishii, A.3
Masuda, S.4
Terazima, M.5
-
10
-
-
61449219844
-
The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli
-
Tschowri, N., Busse, S., and Hengge, R. (2009) The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli Genes Dev. 23, 522-534
-
(2009)
Genes Dev.
, vol.23
, pp. 522-534
-
-
Tschowri, N.1
Busse, S.2
Hengge, R.3
-
11
-
-
54349089413
-
Influence of a joining helix on the BLUF domain of the YcgF photoreceptor from Escherichia coli
-
Schroeder, C., Werner, K., Otten, H., Kratzig, S., Schwalbe, H., and Essen, L. O. (2008) Influence of a joining helix on the BLUF domain of the YcgF photoreceptor from Escherichia coli ChemBioChem 9, 2463-2473
-
(2008)
ChemBioChem
, vol.9
, pp. 2463-2473
-
-
Schroeder, C.1
Werner, K.2
Otten, H.3
Kratzig, S.4
Schwalbe, H.5
Essen, L.O.6
-
12
-
-
34250200089
-
Transient dimerization and conformational change of a BLUF protein: YcgF
-
Nakasone, Y., Ono, T. A., Ishii, A., Masuda, S., and Terazima, M. (2007) Transient dimerization and conformational change of a BLUF protein: YcgF J. Am. Chem. Soc. 129, 7028-7035
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 7028-7035
-
-
Nakasone, Y.1
Ono, T.A.2
Ishii, A.3
Masuda, S.4
Terazima, M.5
-
13
-
-
33645235288
-
Light induced structural changes of a full-length protein and its BLUF domain in YcgF(Blrp), a blue-light sensing protein that uses FAD (BLUF)
-
Hasegawa, K., Masuda, S., and Ono, T. A. (2006) Light induced structural changes of a full-length protein and its BLUF domain in YcgF(Blrp), a blue-light sensing protein that uses FAD (BLUF) Biochemistry 45, 3785-3793
-
(2006)
Biochemistry
, vol.45
, pp. 3785-3793
-
-
Hasegawa, K.1
Masuda, S.2
Ono, T.A.3
-
14
-
-
30444432981
-
The solution structure of the AppA BLUF domain: Insight into the mechanism of light-induced signaling
-
Grinstead, J. S., Hsu, S. T., Laan, W., Bonvin, A. M., Hellingwerf, K. J., Boelens, R., and Kaptein, R. (2006) The solution structure of the AppA BLUF domain: insight into the mechanism of light-induced signaling ChemBioChem 7, 187-193
-
(2006)
ChemBioChem
, vol.7
, pp. 187-193
-
-
Grinstead, J.S.1
Hsu, S.T.2
Laan, W.3
Bonvin, A.M.4
Hellingwerf, K.J.5
Boelens, R.6
Kaptein, R.7
-
15
-
-
65249090230
-
Structure and insight into blue light-induced changes in the BlrP1 BLUF domain
-
Wu, Q. and Gardner, K. H. (2009) Structure and insight into blue light-induced changes in the BlrP1 BLUF domain Biochemistry 48, 2620-2629
-
(2009)
Biochemistry
, vol.48
, pp. 2620-2629
-
-
Wu, Q.1
Gardner, K.H.2
-
16
-
-
28944448536
-
Time-resolved spectroscopic studies of the AppA blue-light receptor BLUF domain from Rhodobacter sphaeroides
-
Dragnea, V., Waegele, M., Balascuta, S., Bauer, C., and Dragnea, B. (2005) Time-resolved spectroscopic studies of the AppA blue-light receptor BLUF domain from Rhodobacter sphaeroides Biochemistry 44, 15978-15985
-
(2005)
Biochemistry
, vol.44
, pp. 15978-15985
-
-
Dragnea, V.1
Waegele, M.2
Balascuta, S.3
Bauer, C.4
Dragnea, B.5
-
17
-
-
33748300578
-
Crystal structures of the AppA BLUF domain photoreceptor provide insights into blue light-mediated signal transduction
-
Jung, A., Reinstein, J., Domratcheva, T., Shoeman, R. L., and Schlichting, I. (2006) Crystal structures of the AppA BLUF domain photoreceptor provide insights into blue light-mediated signal transduction J. Mol. Biol. 362, 717-732
-
(2006)
J. Mol. Biol.
, vol.362
, pp. 717-732
-
-
Jung, A.1
Reinstein, J.2
Domratcheva, T.3
Shoeman, R.L.4
Schlichting, I.5
-
18
-
-
33750317872
-
Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling
-
Yuan, H., Anderson, S., Masuda, S., Dragnea, V., Moffat, K., and Bauer, C. (2006) Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling Biochemistry 45, 12687-12694
-
(2006)
Biochemistry
, vol.45
, pp. 12687-12694
-
-
Yuan, H.1
Anderson, S.2
Masuda, S.3
Dragnea, V.4
Moffat, K.5
Bauer, C.6
-
19
-
-
20144368776
-
Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides
-
DOI 10.1021/bi0502691
-
Anderson, S., Dragnea, V., Masuda, S., Ybe, J., Moffat, K., and Bauer, C. (2005) Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides Biochemistry 44, 7998-8005 (Pubitemid 40776660)
-
(2005)
Biochemistry
, vol.44
, Issue.22
, pp. 7998-8005
-
-
Anderson, S.1
Dragnea, V.2
Masuda, S.3
Ybe, J.4
Moffat, K.5
Bauer, C.6
-
20
-
-
33746653375
-
Hydrogen-bond switching through a radical pair mechanism in a flavin-binding photoreceptor
-
Gauden, M., van Stokkum, I. H., Key, J. M., Luhrs, D., van Grondelle, R., Hegemann, P., and Kennis, J. T. (2006) Hydrogen-bond switching through a radical pair mechanism in a flavin-binding photoreceptor Proc. Natl. Acad. Sci. U.S.A. 103, 10895-10900
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 10895-10900
-
-
Gauden, M.1
Van Stokkum, I.H.2
Key, J.M.3
Luhrs, D.4
Van Grondelle, R.5
Hegemann, P.6
Kennis, J.T.7
-
21
-
-
23044447414
-
Absorption and fluorescence spectroscopic characterization of BLUF domain of AppA from Rhodobacter sphaeroides
-
Zirak, P., Penzkofer, A., Schiereis, T., Hegemann, P., Jung, A., and Schlichting, I. (2005) Absorption and fluorescence spectroscopic characterization of BLUF domain of AppA from Rhodobacter sphaeroides Chem. Phys. 315, 142-154
-
(2005)
Chem. Phys.
, vol.315
, pp. 142-154
-
-
Zirak, P.1
Penzkofer, A.2
Schiereis, T.3
Hegemann, P.4
Jung, A.5
Schlichting, I.6
-
22
-
-
52149124133
-
Structures of the chromophore binding sites in BLUF domains as studied by molecular dynamics and quantum chemical calculations
-
Obanayama, K., Kobayashi, H., Fukushima, K., and Sakurai, M. (2008) Structures of the chromophore binding sites in BLUF domains as studied by molecular dynamics and quantum chemical calculations Photochem. Photobiol. 84, 1003-1010
-
(2008)
Photochem. Photobiol.
, vol.84
, pp. 1003-1010
-
-
Obanayama, K.1
Kobayashi, H.2
Fukushima, K.3
Sakurai, M.4
-
23
-
-
43849105414
-
Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors
-
Domratcheva, T., Grigorenko, B. L., Schlichting, I., and Nemukhin, A. V. (2008) Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors Biophys. J. 94, 3872-3879
-
(2008)
Biophys. J.
, vol.94
, pp. 3872-3879
-
-
Domratcheva, T.1
Grigorenko, B.L.2
Schlichting, I.3
Nemukhin, A.V.4
-
24
-
-
51949088672
-
A conclusive mechanism of the photoinduced reaction cascade in blue light using flavin photoreceptors
-
Sadeghian, K., Bocola, M., and Schutz, M. (2008) A conclusive mechanism of the photoinduced reaction cascade in blue light using flavin photoreceptors J. Am. Chem. Soc. 130, 12501-12513
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 12501-12513
-
-
Sadeghian, K.1
Bocola, M.2
Schutz, M.3
-
25
-
-
70350703393
-
Spectroscopic studies of the AppA BLUF domain from Rhodobacter sphaeroides: Addressing movement of tryptophan 104 in the signaling state
-
Dragnea, V., Arunkumar, A. I., Yuan, H., Giedroc, D. P., and Bauer, C. E. (2009) Spectroscopic studies of the AppA BLUF domain from Rhodobacter sphaeroides: addressing movement of tryptophan 104 in the signaling state. Biochemistry 48, 9969-9979.
-
(2009)
Biochemistry
, vol.48
, pp. 9969-9979
-
-
Dragnea, V.1
Arunkumar, A.I.2
Yuan, H.3
Giedroc, D.P.4
Bauer, C.E.5
-
26
-
-
0002388667
-
On the quenching time of fluorescence
-
Stern, O. and Volmer, M. (1919) On the quenching time of fluorescence Phys. Z. 20, 183-188
-
(1919)
Phys. Z.
, vol.20
, pp. 183-188
-
-
Stern, O.1
Volmer, M.2
-
27
-
-
65249090230
-
Structure and insight into blue light-induced changes in the BlrP1 BLUF domain
-
Wu, Q. and Gardner, K. H. (2009) Structure and insight into blue light-induced changes in the BlrP1 BLUF domain Biochemistry 48, 2620-2629
-
(2009)
Biochemistry
, vol.48
, pp. 2620-2629
-
-
Wu, Q.1
Gardner, K.H.2
-
28
-
-
52949104454
-
Structural requirements for key residues and auxiliary portions of a BLUF domain
-
Wu, Q., Ko, W. H., and Gardner, K. H. (2008) Structural requirements for key residues and auxiliary portions of a BLUF domain Biochemistry 47, 10271-10280
-
(2008)
Biochemistry
, vol.47
, pp. 10271-10280
-
-
Wu, Q.1
Ko, W.H.2
Gardner, K.H.3
-
29
-
-
33845188381
-
Light-induced flipping of a conserved glutamine sidechain and its orientation in the AppA BLUF domain
-
Grinstead, J. S., Avila-Perez, M., Hellingwerf, K. J., Boelens, R., and Kaptein, R. (2006) Light-induced flipping of a conserved glutamine sidechain and its orientation in the AppA BLUF domain J. Am. Chem. Soc. 128, 15066-15067
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 15066-15067
-
-
Grinstead, J.S.1
Avila-Perez, M.2
Hellingwerf, K.J.3
Boelens, R.4
Kaptein, R.5
-
30
-
-
34247263900
-
The critical role of a hydrogen bond between Gln63 and Trp104 in the blue-light sensing BLUF domain that controls AppA activity
-
Masuda, S., Tomida, Y., Ohta, H., and Takamiya, K. I. (2007) The critical role of a hydrogen bond between Gln63 and Trp104 in the blue-light sensing BLUF domain that controls AppA activity, J. Mol. Biol. 368, 1223-1230.
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 1223-1230
-
-
Masuda, S.1
Tomida, Y.2
Ohta, H.3
Takamiya, K.I.4
-
31
-
-
13444291923
-
Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state
-
DOI 10.1021/bi047876t
-
Masuda, S., Hasegawa, K., and Ono, T. A. (2005) Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state Biochemistry 44, 1215-1224 (Pubitemid 40209001)
-
(2005)
Biochemistry
, vol.44
, Issue.4
, pp. 1215-1224
-
-
Masuda, S.1
Hasegawa, K.2
Ono, T.-A.3
-
32
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends, T. R., Hartmann, E., Griese, J. J., Beitlich, T., Kirienko, N. V., Ryjenkov, D. A., Reinstein, J., Shoeman, R. L., Gomelsky, M., and Schlichting, I. (2009) Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase Nature 459, 1015-1018
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.1
Hartmann, E.2
Griese, J.J.3
Beitlich, T.4
Kirienko, N.V.5
Ryjenkov, D.A.6
Reinstein, J.7
Shoeman, R.L.8
Gomelsky, M.9
Schlichting, I.10
-
33
-
-
0036016438
-
Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch
-
Crosson, S. and Moffat, K. (2002) Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch Plant Cell 14, 1067-1075
-
(2002)
Plant Cell
, vol.14
, pp. 1067-1075
-
-
Crosson, S.1
Moffat, K.2
-
34
-
-
0037380836
-
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii
-
Fedorov, R., Schlichting, I., Hartmann, E., Domratcheva, T., Fuhrmann, M., and Hegemann, P. (2003) Crystal structures and molecular mechanism of a light-induced signaling switch: the Phot-LOV1 domain from Chlamydomonas reinhardtii Biophys. J. 84, 2474-2482
-
(2003)
Biophys. J.
, vol.84
, pp. 2474-2482
-
-
Fedorov, R.1
Schlichting, I.2
Hartmann, E.3
Domratcheva, T.4
Fuhrmann, M.5
Hegemann, P.6
-
35
-
-
0029110488
-
1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore
-
Borgstahl, G. E., Williams, D. R., and Getzoff, E. D. (1995) 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore Biochemistry 34, 6278-6287
-
(1995)
Biochemistry
, vol.34
, pp. 6278-6287
-
-
Borgstahl, G.E.1
Williams, D.R.2
Getzoff, E.D.3
-
36
-
-
18744403684
-
Insights into hRPA32 C-terminal domain-mediated assembly of the simian virus 40 replisome
-
Arunkumar, A. I., Klimovich, V., Jiang, X., Ott, R. D., Mizoue, L., Fanning, E., and Chazin, W. J. (2005) Insights into hRPA32 C-terminal domain-mediated assembly of the simian virus 40 replisome Nat. Struct. Mol. Biol. 12, 332-339
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 332-339
-
-
Arunkumar, A.I.1
Klimovich, V.2
Jiang, X.3
Ott, R.D.4
Mizoue, L.5
Fanning, E.6
Chazin, W.J.7
|