Polaribacter sejongensis sp. nov., isolated from Antarctic soil, and emended descriptions of the genus Polaribacter, Polaribacter butkevichii and Polaribacter irgensii

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 11, 2013, Pages 4000-4005

  Kim, Byung Chun ^a,b   Oh, Hyun Woo ^a   Kim, Hyangmi ^a   Park, Doo Sang ^a   Hong, Soon Gyu ^c   Lee, Hong Kum ^c   Bae, Kyung Sook ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Hanyang University   (South Korea)

^c Korea Polar Research Institute (KOPRI)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FARNOQUINONE; PHOSPHATIDYLETHANOLAMINE; QUINONE DERIVATIVE; RNA 16S;

ANTARCTICA; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; FLAVOBACTERIACEAE; GENE SEQUENCE; GENUS; GRAM STAINING; HYDROLYSIS; LIPID COMPOSITION; MESOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLARIBACTER BUTKEVICHII; POLARIBACTER IRGENSII; POLARIBACTER SEJONGENSIS; PRIORITY JOURNAL; TYPE STRAIN;

EID: 84887068530     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.047100-0     Document Type: Article

References (28)

1. Altenburger, P., Kampfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52.
2. Bernardet, J. F. (2011). Family I. Flavobacteriaceae Reichenbach 1992. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, pp. 106-111. Edited by by N. R. Krieg, W. Ludwig, W. B. Whitman,
3. B. P. Hedlund, B. J. Paster, J. T. Staley, N. Ward, D. Brown & A. Parte. New York: Springer.
4. Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
5. Chakrabarty, A. N., Adhya, S. & Pramanik, M. K. (1970). The hydrolysis of Tween 80 by vibrios and aeromonads. J Appl Bacteriol 33, 397-402.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Fukui, Y., Abe, M., Kobayashi, M., Saito, H., Oikawa, H., Yano, Y. & Satomi, M. (2013). Polaribacter porphyrae sp. nov. isolated from the red alga Porphyra yezoensis, and emended descriptions of the genus Polaribacter and two Polaribacter species. Int J Syst Evol Microbiol 63, 1665-1672.
11. Gosink, J. J., Woese, C. R. & Staley, J. T. (1998). Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48, 223-235.
12. Kim, B.-C., Park, D.-S., Kim, H., Oh, H.-W., Lee, K. H., Shin, K.-S. & Bae, K. S. (2012a). Herbiconiux moechotypicola sp. nov., a xylanolytic bacterium isolated from the gut of hairy long-horned toad beetles, Moechotypa diphysis (Pascoe). Int J Syst Evol Microbiol 62, 90-95.
13. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012b). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
14. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
15. Komagata, K. & Suzuki, K. (1988). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
16. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
17. Lee, Y. S., Lee, D. H., Kahng, H. Y., Sohn, S. H. & Jung, J. S. (2011). Polaribacter gangjinensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61, 1425-1429.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Kalinovskaya, N. I., Mikhailov, V. V., Kim, I. S. & Bae, K. S. (2005). Polaribacter butkevichii sp. nov., a novel marine mesophilic bacterium of the family Flavobacteriaceae. Curr Microbiol 51, 408-412.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
22. Sasser, M. (2001). Identification of bacteria by gas chromatography of cellular fatty acids, Technical note 101. Newark, DE: MIDI Inc.
23. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
24. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
25. Teather, R. M. & Wood, P. J. (1982). Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43, 777-780.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
28. Yoon, J. H., Kang, S. J. & Oh, T. K. (2006). Polaribacter dokdonensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 56, 1251-1255.