Background and new contributions in the study of the human Y chromosome in South American populations;Antecedentes y nuevos aportes en el estudio del cromosoma Y en poblaciones humanas Sudamericanas

BAG - Journal of Basic and Applied Genetics

Volumn 22, Issue 1, 2011, Pages

  Bailliet, Graciela ^a   Ramallo, Virginia ^a   Muzzio, Marina ^a,b   Santos, María R ^a,b   Motti, Josefina M B ^a,b   Bianchi, Néstor O ^a   Bravi, Claudio M ^a,b  

^a Centro Científico y Tecnológico Consejo Nacional de Investigaciones Científicas y Técnicas   (Argentina)

^b FACULTAD DE CIENCIAS NATURALES Y MUSEO   (Argentina)

Author keywords

Genetic ancestrally; Haplo groups; Human populations; Parental lineages; SNP

Indexed keywords

ABORIGINE; ARTICLE; HUMAN; MALE; MIGRATION; PHYLOGENY; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH AMERICA; URBAN AREA; Y CHROMOSOME;

EID: 84887053006     PISSN: 16660390     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (47)

1. Altuna, M.E., García, A., Ramallo, V., Bailliet, G., Modesti, N.M., Demarchi, D.A. (2009). Origin of paternal lineages in an admixed population of Northern Argentina (La Esperanza, Jujuy). Forensic Science International: Genetics Supplement Series 2:451-452.
2. Bailliet, G., Ramallo, V., Muzzio, M., García, A., Santos, M.R., Alfaro, E.L., Dipierri, J.E., Salceda, S., Carnese, F.R., Bravi, C.M. Bianchi, N.O., Demarchi, D.A. (2009). Brief Communication: Restricted Geographic Distribution for Y-Q*Paragroup in South America. Am. J Phys Anthropol. 140:578-582 (2009)
3. Bergen, A.W., Wang, C.Y., Tsai, J., Jefferson, K., Dey, C., Smith, K.D., Park, S.C., Tsai, S.J., Goldman, D. (1999). An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping. Ann Hum Genet 63:63-80
4. Bianchi, N., Bailliet, G., Bravi, C.M., Pena SD, Rothhammer F. (1997). Origin of Amerindian Y-chromosome as inferred by the analysis of six polymorphic markers. Am J Phys Anthropol 102:79-89.
5. Bianchi, N.O., Catanesi, C.I., Bailliet, G., Martinez-Marignac, V.L.,Bravi, C.M., Vidal-Rioja, L.B., Herrera, R.J., Lopez-Camelo, J.S. (1998). Characterization of ancestral and derived Y-chromosome haplotypes of New World native populations. Am. J Hum Genet 63:1862-1871.-
6. Bolnick, D.A., Bolnick, D.I., Smith, D.G. (2006). Asymmetric male and female genetic histories among Native Americans from Eastern North America. Mol. Biol. Evol. 23(11): 2161-2174
7. Bortolini, M-C., Salzano, F.M., Thomas, M.G., Stuart, S., Nasanen, S.P.K., Bau, C.H.D., Hutz, M.H., Layrisse, Z., Petzl-Erler, M.L., Tsuneto, L.T., Hill K., Hurtado, A.M., Castro-de-Guerra, D., Torres, M.M., Groot, H., Michalski, R., Nymadawa, P., Bedoya, G., Bradman, N., Labuda, D., Ruiz-Linares, A. (2003). Y-chromosome evidence for differing ancient demographic histories in the Americas. Am J Hum Genet 73(3):524-39.
8. Bravi, C.M., Bailliet, G., Crisci, J.V., Bianchi, N.O. (1997a). Evolution of YAP+ human Y-chromosomes J. Genet. Mol. Biol. 8: 65-69.b
9. Bravi, C.M., Bailliet, G., Martìnez-Marignac, V.L., Bianchi, N.O. (2000). Origin of YAP+ lineages of the human Y-chromosome. Am. J. Phis. Antrop. 112 (2):149-158.
10. Bravi, C.M., Sans, M., Bailliet, G., Martinez-Marignac, V.L., Bianchi, N.O. (1997b). Characterization of mitochondrial and Y-chromosome haplotypes in a uruguayan population of African ancestry. Hum. Biol. 69 (5):641-652.
11. Dipierri, J.E., Alfaro, E., Martinez-Marignac, V.L., Bailliet, G., Bravi, C.M., Cejas, S., Bianchi, N.O. (1998). Paternal directional mating in two amerindian subpopulations from the northwest of Argentina". Hum. Biol. 70 (6):1001-1010. -
12. Dipierri, J.E., Alfaro, E., Peña, J.A., Jacques, C. and Dogoujon, J.M. (2000). GM, KM inmunoglobulin allotypes and other serum genetic markers (HP, GC, PI and TF) among south American populations living at different altitude (Jujuy province, Argentina) Admixture Estimates. Hum. Biol. 72(2):305-319.
13. Dipierri, J.E., Alfaro, E., Vullo, C., Gutiérrez, N. (1997). El polimorfismo HLA en el noroeste argentino. III Jornadas Nacionales de Antropología Biológica, Rosario Argentina.
14. Excoffier L, G. L, and Schneider S. (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1.
15. Schneider, S., Roessli, D., Excoffier, L. (2000). Arlequin ver.2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory. Unversity of Geneva. Switzerland.
16. Hammer, M.F. (1994). Arecent insertion of an Alu element on the Y chromosome is a useful marker for human population studies. Mol. Biol. Evol. 11:749-761.
17. Hammer, M.F., Blackmer, F., Garrigan, D., Nachman, M.W., Wilder, J.A. (2003). Human population structure and its effects on sampling Y chromosome sequence variation. Genetics 164: 1495-1509
18. Hammer, M.F., Karafet, T.M., Redd, A.J., Jarjanazi, H., Santachiara-Benerecetti, S., Soodyall, H., Zegura, S.L. (2001). Hierarchical patterns of global human Y-chromosome diversity. Mol. Biol. Evol. 18: 1189-1203
19. Hammer, M.F., Redd, A.J., Wood, E.T., Bonner, M.R., Jarjanazi, H., Karafet, T., Santachiara-Benerecetti, S., Oppenheim, A., Jobling, M.A., Jenkins, T., et al. (2000). Jewish and Middle Eastern non-Jewish populations share a common pool of Y-chromosome biallelic haplotypes. Proc. Natl. Acad. Sci. 97: 6769-6774.
20. Hernández, I. (1992). Los indios de la Argentina. Colecciones Mapfre 1492, Madrid.
21. Jobling, M.A. and Tyler-Smith, C. (2003). The human Y chromosome: An evolutionary marker comes of age. Nat. Rev. Genet. 4: 598-612.
22. Karafet, T.M., Mendez, F.L., Meilerman, M.B., Underhill, P.A., Zegura, S.L., Hammer, M.F. (2008). New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res.18(5):830-8.
23. Karafet, T.M., Zegura, S.L., Posukh, O., Osipova, L., Bergen, A., Long, J., Goldman, D., Klitz, W., Harihara, S., de Knijff, P., Wiebe, V., Griffiths, R.C., Templeton, A.R. y Hammer, M.F. (1999). Ancestral Asian Source(s) of New World Y-Chromosome Founder Haplotypes. Am. J. Hum. Genet. 64:817-831,
24. Lell, J.T., Sukernik, R.I., Starikovskaya, Y.B., Su, B., Jin, L., Schurr, T.G., Underhill, P.A., Wallace, D.C. (2002). The dual origin and Siberian affinities of Native American Y chromosomes. Am J Hum Genet 70:192-206.
25. Martinez Sarasola C . (1992). In: EMECE (ed.): Nuestros paisanos los indios. Vida, historia y destino de las comunidades indígenas de la Argentina.
26. Nei, M. (1972). Genetic distance between populations. Amer. Naturalist, 106:283-292.
27. Pena, S.D.J., Santos, F.R., Bianchi, N.O., Bravi, C.M., Carnese, F.R., Rothhammer, F., Gerelsaikhan, T., Munkhtuja, B., Oyunsuren, T. (1995). A major founder Y-chromosome haplotype in Amerindians. Nat Genet 11:15.
28. Pucci R. (1998). El tamaño de la población aborigen del Tucumán en la época de la conquista: balance de un problema y propuesta de una estimación. Población y Sociedad No 5: 239-270.
29. Ramallo, V., Mucci, J.M., García, A., Muzzio, M., Motti, J.M.B., Santos, M.R., Perez, M.E., Alfaro, E.L., Dipierri, J.E., Demarchi, D.A., Bravi, C.M., Bailliet, G. (2009a). Comparison of Y chromosome haplogroup frequencies in 8 Provinces of Argentina. Forensic Science International: Genetics Supplement Series 2:431-432
30. Ramallo, V., Muzzio, M., Motti, J.B.M., Salceda, S., Bailliet, G. (2009b). Linajes masculinos y su diversidad en comunidades wichi de Formosa. Revista del Museo de Antropología 2: 67-74
31. Rangel-Villalobos, H., Muñoz-Valle, J.F., González- Martín, A., Gorostiza, A., Magaña, M.T., Páez-Riberos, L.A. (2008). Genetic admixture, relatedness, and structure patterns among Mexican populations revealed by the Y-chromosome. Am J Phys Anthropol. 135(4):448-61.
32. Roewer, L., Arnemann, J., Spurr, N.K., Grzeschik, K.-H. and Epplen, J.T. (1992). Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts. Hum. Genet., 89, 389-394.
33. Ruiz-Linares, A., Ortiz-Barrientos, D., Figueroa, M., Mesa, N., Munera, J.G., Bedoya, G., Velez, I.D., Garcia, L.F., Perez,-Lezaun, A., Bertranpetit, J., Feldman, M.W., Goldstein, D.B. (1999). Microsatellites provide evidence for Y chromosome diversity among the founders of the New World. Proc Natl Acad Sci USA 96:6312-6317.
34. Santos, F.R., Pena, S.D.J., and Tyler-Smith, C. (1995b). PCR haplotypes for the human Y chromosome based on alphoid satellite variants and heteroduplex analysis. Gene 165:191-198.
35. Santos, F.R., Bianchi, N.O., and Pena, S.D.J. (1996a). Worldwide distribution of human Y chromosome haplotypes. Genome Res. 6:601-611.
36. Santos, F.R., Rodríguez-Delfin, L., Pena, S.D.J., Moore, J., and Weiss, K.M. (1996b). North and South Amerindians may have the same major founder Y chromosome haplotype. Am. J. Hum. Genet. 58:1369-1370.
37. Seielstad, M., Yuldasheva, N., Singh, N., Underhill, P., Oefner, P., Shen, P.,Wells, R.S. (2003). A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas. Am J Hum Genet 73(3):700-5
38. Seielstad, M., Herbert, J.M., Lin, A.A., Underhill, P.A., Ibrahim, M., Vollrath, D., and Cavalli-Sforza, L. (1994). Construction of human Y-chromosomal haplotypes using new polymorphic A to G transition. Hum. Mol. Genet. 3:2159-2161.
39. Sengupta, S., Zhivotovsky, L.A., King, R., Mehdi, S.Q., Edmonds, C.A., Chow, C.E., Lin, A.A., Mitra, M., Sil, S.K., Ramesh, A., Usha Rani, M.V., Thakur, C.M., Cavalli-Sforza, L.L., Majumder, P.P., Underhill, P.A. (2006). Polarity and temporality of high-resolution Y- chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 78:202-221.
40. Su, B., Xiao, J., Underhill, P., Deka, R., Zhang, W., Akey, J., Huang, W., Shen, D., Lu, D., Luo, J., Chu, J., Tan, J., Shen, P., Davis, R., Cavalli-Sforza, L., Chakraborty, R., Xiong, M., Du, R., Oefner, P., Chen, Z., Jin, L. (1999). Y-chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. Am J Hum Genet 65:1718-1724.
41. Su, B., Jin, L., Underhill, P., Martinson, J., Saha, N., McGarvey, S.T., Shriver, M.D., Chu, J., Oefner, P., Chakraborty, R., et al. (2000). Polynesian origins: Insights from the Y chromosome. Proc. Natl. Acad. Sci. 97: 8225-8228.
42. Underhill, P. A., Jin, L., Zemans, R., Oefner, P. J. & Cavalli-Sforza, L. L. (1996). A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history.Proc. Natl Acad. Sci. USA 93, 196-200.
43. Underhill, P.A., Shen, P., Lin, A.A., Jin, L., Passarino, G., Yang, W.H., Kauffman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J.R., Mehdi, S.Q., Seielstad, M.T., Wells, R.S., Piazza, A., Davis, R.W., Feldman, M.W., Cava-lli- Sforza, L.L., Oefner, P.J. (2000). Y chromosome sequence variation and the history of human populations. Nat Genet 26:358-361.
44. Underhill, P.A., Passarino, G., Lin, A.A., Shen, P., Mirazon, L.M., Foley, R.A., Oefner, P.J., Cavalli-Sforza, L.L. (2001). The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann Hum Genet 65:43-62.
45. Y Chromosome Consortium. (2002). A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res 12:339-348.
46. Zegura, S.L., Karafet, T.M., Zhivotovsky, L.A., Hammer, M.F. (2004). High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol. Biol. Evol. 21: 164-175.
47. Zerjal, T., Wells, R.S., Yuldasheva, N., Ruzibakiev, R., Tyler-Smith, C. (2002). A genetic landscape reshaped by recent events: Ychromosomal insights into central Asia. Am J Hum Genet 71:466-482