-
1
-
-
0034630451
-
Single-nucleotide polymorphism analysis by pyrosequencing
-
Ahmadian A., Gharizadeh B., et al. Single-nucleotide polymorphism analysis by pyrosequencing. Anal. Biochem. 2000, 280(1):103-110. 10.1006/abio.2000.4493.
-
(2000)
Anal. Biochem.
, vol.280
, Issue.1
, pp. 103-110
-
-
Ahmadian, A.1
Gharizadeh, B.2
-
2
-
-
84858397328
-
Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models
-
Birdsell D.N., Pearson T., et al. Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS One 2012, 7(3):e32866. 10.1371/journal.pone.0032866.
-
(2012)
PLoS One
, vol.7
, Issue.3
-
-
Birdsell, D.N.1
Pearson, T.2
-
3
-
-
57349084892
-
Improvements to bead-based oligonucleotide ligation SNP genotyping assays
-
Bruse S., Moreau M., et al. Improvements to bead-based oligonucleotide ligation SNP genotyping assays. Biotechniques 2008, 45(5):559-571. 10.2144/000112960.
-
(2008)
Biotechniques
, vol.45
, Issue.5
, pp. 559-571
-
-
Bruse, S.1
Moreau, M.2
-
4
-
-
34247843070
-
Dual priming oligonucleotide system for the multiplex detection of respiratory viruses and SNP genotyping of CYP2C19 gene
-
Chun J.Y., Kim K.J., et al. Dual priming oligonucleotide system for the multiplex detection of respiratory viruses and SNP genotyping of CYP2C19 gene. Nucleic Acids Res. 2007, 35(6):e40. 10.1093/nar/gkm051.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.6
-
-
Chun, J.Y.1
Kim, K.J.2
-
5
-
-
82455186836
-
Characterization of genetic diversity of Bacillus anthracis in France by using high-resolution melting assays and multilocus variable-number tandem-repeat analysis
-
Derzelle S., Laroche S., et al. Characterization of genetic diversity of Bacillus anthracis in France by using high-resolution melting assays and multilocus variable-number tandem-repeat analysis. J. Clin. Microbiol. 2011, 49(12):4286-4292. 10.1128/JCM.05439-11.
-
(2011)
J. Clin. Microbiol.
, vol.49
, Issue.12
, pp. 4286-4292
-
-
Derzelle, S.1
Laroche, S.2
-
6
-
-
74849123420
-
A rapid multiplex assay for nucleic acid-based diagnostics
-
Deshpande A., Gans J., et al. A rapid multiplex assay for nucleic acid-based diagnostics. J. Microbiol. Methods 2010, 80(2):155-163. 10.1016/j.mimet.2009.12.001.
-
(2010)
J. Microbiol. Methods
, vol.80
, Issue.2
, pp. 155-163
-
-
Deshpande, A.1
Gans, J.2
-
7
-
-
73449104771
-
High-throughput methods for SNP genotyping
-
Ding C., Jin S. High-throughput methods for SNP genotyping. Methods Mol. Biol. 2009, 578:245-254. 10.1007/978-1-60327-411-1_16.
-
(2009)
Methods Mol. Biol.
, vol.578
, pp. 245-254
-
-
Ding, C.1
Jin, S.2
-
8
-
-
33846143870
-
A single-nucleotide-polymorphism-based multilocus genotyping assay for subtyping lineage I isolates of Listeria monocytogenes
-
Ducey T.F., Page B., et al. A single-nucleotide-polymorphism-based multilocus genotyping assay for subtyping lineage I isolates of Listeria monocytogenes. Appl. Environ. Microbiol. 2007, 73(1):133-147. 10.1128/AEM.01453-06.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, Issue.1
, pp. 133-147
-
-
Ducey, T.F.1
Page, B.2
-
9
-
-
28544446736
-
Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection
-
Dunbar S.A. Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection. Clin. Chim. Acta 2006, 363(1-2):71-82. 10.1016/j.cccn.2005.06.023.
-
(2006)
Clin. Chim. Acta
, vol.363
, Issue.1-2
, pp. 71-82
-
-
Dunbar, S.A.1
-
10
-
-
0037400958
-
Quantitative, multiplexed detection of bacterial pathogens: DNA and protein applications of the Luminex LabMAP system
-
(doi: S0167701203000289)
-
Dunbar S.A., Vander Zee C.A., et al. Quantitative, multiplexed detection of bacterial pathogens: DNA and protein applications of the Luminex LabMAP system. J. Microbiol. Methods 2003, 53(2):245-252. (doi: S0167701203000289).
-
(2003)
J. Microbiol. Methods
, vol.53
, Issue.2
, pp. 245-252
-
-
Dunbar, S.A.1
Vander Zee, C.A.2
-
11
-
-
64749084894
-
Multiplex single nucleotide polymorphism (SNP)-based genotyping in allohexaploid wheat using padlock probes
-
Edwards K.J., Reid A.L., et al. Multiplex single nucleotide polymorphism (SNP)-based genotyping in allohexaploid wheat using padlock probes. Plant Biotechnol. J. 2009, 7(4):375-390. 10.1111/j.1467-7652.2009.00413.x.
-
(2009)
Plant Biotechnol. J.
, vol.7
, Issue.4
, pp. 375-390
-
-
Edwards, K.J.1
Reid, A.L.2
-
12
-
-
0033046861
-
Single-tube genotyping without oligonucleotide probes
-
Germer S., Higuchi R. Single-tube genotyping without oligonucleotide probes. Genome Res. 1999, 9(1):72-78. 10.1101/gr.9.1.72.
-
(1999)
Genome Res.
, vol.9
, Issue.1
, pp. 72-78
-
-
Germer, S.1
Higuchi, R.2
-
13
-
-
33747829927
-
Whole-genome genotyping
-
Gunderson K.L., Steemers F.J., et al. Whole-genome genotyping. Methods Enzymol. 2006, 410:359-376. 10.1016/S0076-6879(06)10017-8.
-
(2006)
Methods Enzymol.
, vol.410
, pp. 359-376
-
-
Gunderson, K.L.1
Steemers, F.J.2
-
14
-
-
0026698636
-
Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR
-
Huang M.M., Arnheim N., et al. Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR. Nucleic Acids Res. 1992, 20(17):4567-4573. 10.1093/nar/20.17.4567.
-
(1992)
Nucleic Acids Res.
, vol.20
, Issue.17
, pp. 4567-4573
-
-
Huang, M.M.1
Arnheim, N.2
-
15
-
-
84857072900
-
Development and comparison of two assay formats for parallel detection of four biothreat pathogens by using suspension microarrays
-
Janse I., Bok J.M., et al. Development and comparison of two assay formats for parallel detection of four biothreat pathogens by using suspension microarrays. PLoS One 2012, 7(2):e31958. 10.1371/journal.pone.0031958.
-
(2012)
PLoS One
, vol.7
, Issue.2
-
-
Janse, I.1
Bok, J.M.2
-
16
-
-
0034020175
-
Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis
-
Keim P., Price L.B., et al. Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J. Bacteriol. 2000, 182(10):2928-2936. 10.1128/JB.182.10.2928-2936.2000.
-
(2000)
J. Bacteriol.
, vol.182
, Issue.10
, pp. 2928-2936
-
-
Keim, P.1
Price, L.B.2
-
17
-
-
70350735970
-
The genome and variation of Bacillus anthracis
-
Keim P., Gruendike J.M., et al. The genome and variation of Bacillus anthracis. Mol. Aspects Med. 2009, 30(6):397-405. 10.1016/j.mam.2009.08.005.
-
(2009)
Mol. Aspects Med.
, vol.30
, Issue.6
, pp. 397-405
-
-
Keim, P.1
Gruendike, J.M.2
-
18
-
-
10744221619
-
Large-scale genotyping of complex DNA
-
Kennedy G.C., Matsuzaki H., et al. Large-scale genotyping of complex DNA. Nat. Biotechnol. 2003, 21(10):1233-1237. 10.1038/nbt869.
-
(2003)
Nat. Biotechnol.
, vol.21
, Issue.10
, pp. 1233-1237
-
-
Kennedy, G.C.1
Matsuzaki, H.2
-
19
-
-
35348847064
-
SNP genotyping: technologies and biomedical applications
-
Kim S., Misra A. SNP genotyping: technologies and biomedical applications. Annu. Rev. Biomed. Eng. 2007, 9:289-320. 10.1146/annurev.bioeng.9.060906.152037.
-
(2007)
Annu. Rev. Biomed. Eng.
, vol.9
, pp. 289-320
-
-
Kim, S.1
Misra, A.2
-
20
-
-
77955441898
-
Genome-wide single nucleotide polymorphism typing method for identification of Bacillus anthracis species and strains among B. cereus group species
-
Kuroda M., Serizawa M., et al. Genome-wide single nucleotide polymorphism typing method for identification of Bacillus anthracis species and strains among B. cereus group species. J. Clin. Microbiol. 2010, 48(8):2821-2829. 10.1128/JCM.00137-10.
-
(2010)
J. Clin. Microbiol.
, vol.48
, Issue.8
, pp. 2821-2829
-
-
Kuroda, M.1
Serizawa, M.2
-
21
-
-
0034650608
-
3'-Minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures
-
Kutyavin I.V., Afonina I.A., et al. 3'-Minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures. Nucleic Acids Res. 2000, 28(2):655-661. 10.1093/nar/28.2.655.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.2
, pp. 655-661
-
-
Kutyavin, I.V.1
Afonina, I.A.2
-
22
-
-
0035776497
-
Methods for genotyping single nucleotide polymorphisms
-
Kwok P.Y. Methods for genotyping single nucleotide polymorphisms. Annu. Rev. Genomics Hum. Genet. 2001, 2:235-258. 10.1146/annurev.genom.2.1.235.
-
(2001)
Annu. Rev. Genomics Hum. Genet.
, vol.2
, pp. 235-258
-
-
Kwok, P.Y.1
-
23
-
-
13844261201
-
Comparison of four flow cytometric SNP detection assays and their use in plant improvement
-
Lee S.H., Walker D.R., et al. Comparison of four flow cytometric SNP detection assays and their use in plant improvement. Theor. Appl. Genet. 2004, 110(1):167-174. 10.1007/s00122-004-1827-1.
-
(2004)
Theor. Appl. Genet.
, vol.110
, Issue.1
, pp. 167-174
-
-
Lee, S.H.1
Walker, D.R.2
-
24
-
-
0033006003
-
Allelic discrimination using fluorogenic probes and the 5' nuclease assay
-
Livak K.J. Allelic discrimination using fluorogenic probes and the 5' nuclease assay. Genet. Anal. 1999, 14(5-6):143-149.
-
(1999)
Genet. Anal.
, vol.14
, Issue.5-6
, pp. 143-149
-
-
Livak, K.J.1
-
26
-
-
83055163867
-
Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States
-
Marston C.K., Allen C.A., et al. Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. PLoS One 2011, 6(12):e28274. 10.1371/journal.pone.0028274.
-
(2011)
PLoS One
, vol.6
, Issue.12
-
-
Marston, C.K.1
Allen, C.A.2
-
27
-
-
77955803979
-
Application of high-resolution melting to large-scale, high-throughput SNP genotyping: a comparison with the TaqMan method
-
Martino A., Mancuso T., et al. Application of high-resolution melting to large-scale, high-throughput SNP genotyping: a comparison with the TaqMan method. J. Biomol. Screen. 2010, 15(6):623-629. 10.1177/1087057110365900.
-
(2010)
J. Biomol. Screen.
, vol.15
, Issue.6
, pp. 623-629
-
-
Martino, A.1
Mancuso, T.2
-
28
-
-
13444293024
-
Capillary electrophoretic discrimination of single nucleotide polymorphisms using an oligodeoxyribonucleotidepolyacrylamide conjugate as a pseudo-immobilized affinity ligand: optimum ligand length predicted by the melting temperature values
-
Mishima K., Takarada T., et al. Capillary electrophoretic discrimination of single nucleotide polymorphisms using an oligodeoxyribonucleotidepolyacrylamide conjugate as a pseudo-immobilized affinity ligand: optimum ligand length predicted by the melting temperature values. Anal. Sci. 2005, 21(1):25-29. 10.2116/analsci.21.25.
-
(2005)
Anal. Sci.
, vol.21
, Issue.1
, pp. 25-29
-
-
Mishima, K.1
Takarada, T.2
-
29
-
-
4544319040
-
Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing
-
Pearson T., Busch J.D., et al. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc. Natl. Acad. Sci. U. S. A. 2004, 101(37):13536-13541. 10.1073/pnas.0403844101.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, Issue.37
, pp. 13536-13541
-
-
Pearson, T.1
Busch, J.D.2
-
30
-
-
80052613408
-
Bovine Bacillus anthracis in Cameroon
-
Pilo P., Rossano A., et al. Bovine Bacillus anthracis in Cameroon. Appl. Environ. Microbiol. 2011, 77(16):5818-5821. 10.1128/AEM.00074-11.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, Issue.16
, pp. 5818-5821
-
-
Pilo, P.1
Rossano, A.2
-
31
-
-
78650029130
-
Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis
-
Price E.P., Matthews M.A., et al. Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis. Electrophoresis 2010, 31(23-24):3881-3888. 10.1002/elps.201000379.
-
(2010)
Electrophoresis
, vol.31
, Issue.23-24
, pp. 3881-3888
-
-
Price, E.P.1
Matthews, M.A.2
-
32
-
-
0035079713
-
Analysis of the factor V Leiden mutation using the READIT assay
-
Rhodes R.B., Lewis K., et al. Analysis of the factor V Leiden mutation using the READIT assay. Mol. Diagn. 2001, 6(1):55-61. 10.1054/modi.2001.22327.
-
(2001)
Mol. Diagn.
, vol.6
, Issue.1
, pp. 55-61
-
-
Rhodes, R.B.1
Lewis, K.2
-
33
-
-
3543023204
-
Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification
-
Schouten J.P., McElgunn C.J., et al. Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res. 2002, 30(12):e57. 10.1093/nar/gnf056.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.12
-
-
Schouten, J.P.1
McElgunn, C.J.2
-
34
-
-
0035134454
-
Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies
-
Shi M.M. Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies. Clin. Chem. 2001, 47(2):164-172.
-
(2001)
Clin. Chem.
, vol.47
, Issue.2
, pp. 164-172
-
-
Shi, M.M.1
-
35
-
-
79952197013
-
Simultaneous pathogen detection and antibiotic resistance characterization using SNP-based multiplexed oligonucleotide ligation-PCR (MOL-PCR)
-
Song J., Li P.E., et al. Simultaneous pathogen detection and antibiotic resistance characterization using SNP-based multiplexed oligonucleotide ligation-PCR (MOL-PCR). Adv. Exp. Med. Biol. 2010, 680:455-464. 10.1007/978-1-4419-5913-3_51.
-
(2010)
Adv. Exp. Med. Biol.
, vol.680
, pp. 455-464
-
-
Song, J.1
Li, P.E.2
-
36
-
-
84864111704
-
Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages
-
Stucki D., Malla B., et al. Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages. PLoS One 2012, 7(7):e41253. 10.1371/journal.pone.0041253.
-
(2012)
PLoS One
, vol.7
, Issue.7
-
-
Stucki, D.1
Malla, B.2
-
37
-
-
33645741145
-
The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping
-
(doi: PMC2291745)
-
Tobler A.R., Short S., et al. The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping. J. Biomol. Tech. 2005, 16(4):398-406. (doi: PMC2291745).
-
(2005)
J. Biomol. Tech.
, vol.16
, Issue.4
, pp. 398-406
-
-
Tobler, A.R.1
Short, S.2
-
38
-
-
38349175824
-
Global genetic population structure of Bacillus anthracis
-
Van Ert M.N., Easterday W.R., et al. Global genetic population structure of Bacillus anthracis. PLoS One 2007, 2(5):e461. 10.1371/journal.pone.0000461.
-
(2007)
PLoS One
, vol.2
, Issue.5
-
-
Van Ert, M.N.1
Easterday, W.R.2
-
39
-
-
0036148306
-
Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus
-
Vogler A.J., Busch J.D., et al. Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus. Antimicrob. Agents Chemother. 2002, 46(2):511-513. 10.1128/AAC.46.2.511-513.2002.
-
(2002)
Antimicrob. Agents Chemother.
, vol.46
, Issue.2
, pp. 511-513
-
-
Vogler, A.J.1
Busch, J.D.2
-
40
-
-
2442673171
-
Nucleic acid amplification strategies for DNA microarray-based pathogen detection
-
Vora G.J., Meador C.E., et al. Nucleic acid amplification strategies for DNA microarray-based pathogen detection. Appl. Environ. Microbiol. 2004, 70(5):3047-3054. 10.1128/AEM.70.5.3047-3054.2004.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, Issue.5
, pp. 3047-3054
-
-
Vora, G.J.1
Meador, C.E.2
-
41
-
-
57449110362
-
Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates
-
Ward T.J., Ducey T.F., et al. Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates. Appl. Environ. Microbiol. 2008, 74(24):7629-7642. 10.1128/AEM.01127-08.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, Issue.24
, pp. 7629-7642
-
-
Ward, T.J.1
Ducey, T.F.2
|