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Volumn 52, Issue 28, 2013, Pages 6979-6994

Automated seeding-based nuclei segmentation in nonlinear optical microscopy

Author keywords

[No Author keywords available]

Indexed keywords

COHERENT SCATTERING; FLUORESCENCE MICROSCOPY; IMAGE PROCESSING; IMAGING TECHNIQUES; MEDICAL APPLICATIONS; NONLINEAR OPTICS; OPTICAL DATA PROCESSING; RAMAN SCATTERING; RAMAN SPECTROSCOPY;

EID: 84886893976     PISSN: 1559128X     EISSN: 15394522     Source Type: Journal    
DOI: 10.1364/AO.52.006979     Document Type: Article
Times cited : (10)

References (54)
  • 1
    • 42949161981 scopus 로고    scopus 로고
    • A high-throughput system for segmenting nuclei using multiscale techniques
    • DOI 10.1002/cyto.a.20550
    • P. Gudla, K. Nandy, J. Collins, K. Meaburn, T. Misteli, and S. Lockett, "A high-throughput system for segmenting nuclei using multiscale techniques," Cytom. A 73, 451-466 (2008). (Pubitemid 351614732)
    • (2008) Cytometry Part A , vol.73 , Issue.5 , pp. 451-466
    • Gudla, P.R.1    Nandy, K.2    Collins, J.3    Meaburn, K.J.4    Misteli, T.5    Lockett, S.J.6
  • 2
    • 13244256957 scopus 로고    scopus 로고
    • Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei
    • DOI 10.1002/cyto.a.20099
    • G. Lin, M. Chawla, K. Olson, J. Guzowski, C. Barnes, and B. Roysam, "Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei," Cytom. A 63, 20-33 (2005). (Pubitemid 40194276)
    • (2005) Cytometry Part A , vol.63 , Issue.1 , pp. 20-33
    • Lin, G.1    Chawla, M.K.2    Olson, K.3    Guzowski, J.F.4    Barnes, C.A.5    Roysam, B.6
  • 3
    • 0031832913 scopus 로고    scopus 로고
    • Robust cell nuclei segmentation using statistical modelling
    • DOI 10.1002/1361-6374(199806)6:2<79::AID-BIO3>3.0.CO;2-#, PII S0966905198927058
    • T. Mouroutis, S. Roberts, and A. Bharath, "Robust cell nuclei segmentation using statistical modelling," Bioimaging 6, 79-91 (1998). (Pubitemid 28298683)
    • (1998) Bioimaging , vol.6 , Issue.2 , pp. 79-91
    • Mouroutis, T.1    Roberts, S.J.2    Bharath, A.A.3
  • 4
    • 33747347874 scopus 로고    scopus 로고
    • Automated tool for the detection of cell nuclei in digital microscopic images: Application to retinal images
    • J. Byun, M. Verardo, B. Sumengen, G. Lewis, B. Manjunath, and S. Fisher, "Automated tool for the detection of cell nuclei in digital microscopic images: application to retinal images," Mol. Vis. 12, 949-960 (2006).
    • (2006) Mol. Vis. , vol.12 , pp. 949-960
    • Byun, J.1    Verardo, M.2    Sumengen, B.3    Lewis, G.4    Manjunath, B.5    Fisher, S.6
  • 5
    • 0346243996 scopus 로고    scopus 로고
    • An image analysis-based approach for automated counting of cancer cell nuclei in tissue sections
    • C. Loukas, G. Wilson, B. Vojnovic, and A. Linney, "An image analysis-based approach for automated counting of cancer cell nuclei in tissue sections," Cytom. A 55, 30-42 (2003). (Pubitemid 37522519)
    • (2003) Cytometry Part A , vol.55 , Issue.1 , pp. 30-42
    • Loukas, C.G.1    Wilson, G.D.2    Vojnovic, B.3    Linney, A.4
  • 6
    • 77950245872 scopus 로고    scopus 로고
    • Improved automatic detection and segmentation of cell nuclei in histopathology images
    • Y. Al-Kofahi, W. Lassoued, W. Lee, and B. Roysam, "Improved automatic detection and segmentation of cell nuclei in histopathology images," IEEE Trans. Biomed. Eng. 57, 841-852 (2010).
    • (2010) IEEE Trans. Biomed. Eng. , vol.57 , pp. 841-852
    • Al-Kofahi, Y.1    Lassoued, W.2    Lee, W.3    Roysam, B.4
  • 7
    • 0033906873 scopus 로고    scopus 로고
    • Applying deformable templates for cell image segmentation
    • DOI 10.1016/S0031-3203(99)00091-6
    • A. Garrido and N. Pérez de la Blanca, "Applying deformable templates for cell image segmentation," Pattern Recogn. 33, 821-832 (2000). (Pubitemid 30567259)
    • (2000) Pattern Recognition , vol.33 , Issue.5 , pp. 821-832
    • Garrido, A.1    Perez De La Blanca, N.2
  • 8
    • 3042547731 scopus 로고    scopus 로고
    • Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
    • DOI 10.1111/j.0022-2720.2004.01338.x
    • C.Wählby, I. Sintort, and F. Erlandsson, "Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections," J. Microsc. 215, 67-76 (2004). (Pubitemid 38845127)
    • (2004) Journal of Microscopy , vol.215 , Issue.1 , pp. 67-76
    • Wahlby, C.1    Sintorn, I.-M.2    Erlandsson, F.3    Borgefors, G.4    Bengtsson, E.5
  • 9
    • 0034893266 scopus 로고    scopus 로고
    • Cell image segmentation with kernel-based dynamic clustering and an ellipsoidal cell shape model
    • DOI 10.1006/jbin.2001.1009
    • F. Yang and T. Jiang, "Cell image segmentation with kernelbased dynamic clustering and an ellipsoidal cell shape model," J. Biomed. Inform. 34, 67-73 (2001). (Pubitemid 32721795)
    • (2001) Journal of Biomedical Informatics , vol.34 , Issue.2 , pp. 67-73
    • Yang, F.1    Jiang, T.2
  • 12
    • 33645326241 scopus 로고    scopus 로고
    • Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy
    • X. Chen, X. Zhou, and S. Wong, "Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy," IEEE Trans. Biomed. Eng. 53, 762-766 (2006).
    • (2006) IEEE Trans. Biomed. Eng. , vol.53 , pp. 762-766
    • Chen, X.1    Zhou, X.2    Wong, S.3
  • 13
    • 84890491526 scopus 로고    scopus 로고
    • Automatic segmentation of overlapping nuclei with high background variation using robust estimation and flexible contour models
    • W. Clocksin, "Automatic segmentation of overlapping nuclei with high background variation using robust estimation and flexible contour models," in Proceedings of 12th International Conference on Image Analysis and Processing (2003), pp. 682-687.
    • Proceedings of 12th International Conference on Image Analysis and Processing ( , vol.2003 , pp. 682-687
    • Clocksin, W.1
  • 14
    • 34548299771 scopus 로고    scopus 로고
    • A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images
    • DOI 10.1002/cyto.a.20430
    • G. Lin, M. Chawla, K. Olson, C. Barnes, J. Guzowski, C. Bjornsson,W. Shain, and B. Roysam, "A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images," Cytom. A 71, 724-736 (2007). (Pubitemid 47347770)
    • (2007) Cytometry Part A , vol.71 , Issue.9 , pp. 724-736
    • Lin, G.1    Chawla, M.K.2    Olson, K.3    Barnes, C.A.4    Guzowski, J.F.5    Bjornsson, C.6    Shain, W.7    Roysam, B.8
  • 15
    • 80053945897 scopus 로고    scopus 로고
    • Automated nuclear segmentation of coherent anti-stokes raman scattering microscopy images by coupling superpixel context information with artificial neural networks
    • of Lecture Notes in Computer Science ( Springer
    • A. Hammoudi, F. Li, L. Gao, Z. Wang, M. Thrall, Y. Massoud, and S. Wong, "Automated nuclear segmentation of coherent anti-stokes Raman scattering microscopy images by coupling superpixel context information with artificial neural networks," in Machine Learning in Medical Imaging, Vol. 7009 of Lecture Notes in Computer Science (Springer, 2001), pp. 317-325.
    • (2001) Machine Learning in Medical Imaging , pp. 7009
    • Hammoudi, A.1    Li, F.2    Gao, L.3    Wang, Z.4    Thrall, M.5    Massoud, Y.6    Wong, S.7
  • 16
    • 84860567399 scopus 로고    scopus 로고
    • Non-linear microscopy of smooth muscle cells in artificial extracellular matrices made of cellulose
    • C. Brackmann, J.-O. Dahlberg, N. E. Vrana, C. Lally, P. Gatenholm, and A. Enejder, "Non-linear microscopy of smooth muscle cells in artificial extracellular matrices made of cellulose," J. Biophotonics 5, 404-414 (2012).
    • (2012) J. Biophotonics , vol.5 , pp. 404-414
    • Brackmann, C.1    Dahlberg, J.-O.2    Vrana, N.E.3    Lally, C.4    Gatenholm, P.5    Enejder, A.6
  • 17
    • 84860596756 scopus 로고    scopus 로고
    • Multimodal optical imaging with multiphoton microscopy and optical coherence tomography
    • S. Tang, Y. Zhou, and M. J. Ju, "Multimodal optical imaging with multiphoton microscopy and optical coherence tomography," J. Biophotonics 5, 396-403 (2012).
    • (2012) J. Biophotonics , vol.5 , pp. 396-403
    • Tang, S.1    Zhou, Y.2    Ju, M.J.3
  • 18
    • 84860580093 scopus 로고    scopus 로고
    • Exploring uptake mechanisms of oral nanomedicines using multimodal nonlinear optical microscopy
    • N. L. Garrett, A. Lalatsa, I. Uchegbu, A. Schätzlein, and J. Moger, "Exploring uptake mechanisms of oral nanomedicines using multimodal nonlinear optical microscopy," J. Biophotonics 5, 458-468 (2012).
    • (2012) J. Biophotonics , vol.5 , pp. 458-468
    • Garrett, N.L.1    Lalatsa, A.2    Uchegbu, I.3    Schätzlein, A.4    Moger, J.5
  • 19
    • 84866518840 scopus 로고    scopus 로고
    • From molecular structure to tissue architecture: Collagen organization probed by shg microscopy
    • R. Cicchi, N. Vogler, D. Kapsokalyvas, B. Dietzek, J. Popp, and F. S. Pavone, "From molecular structure to tissue architecture: collagen organization probed by SHG microscopy," J. Biophotonics 6, 129-142 (2013).
    • (2013) J. Biophotonics , vol.6 , pp. 129-142
    • Cicchi, R.1    Vogler, N.2    Kapsokalyvas, D.3    Dietzek, B.4    Popp, J.5    Pavone, F.S.6
  • 21
    • 84867034124 scopus 로고    scopus 로고
    • Spatial orientation mapping of fibers using polarization-sensitive second harmonic generation microscopy
    • V. A. Hovhannisyan, P.-S. Hu, H.-Y. Tan, S.-J. Chen, and C.-Y. Dong, "Spatial orientation mapping of fibers using polarization-sensitive second harmonic generation microscopy," J. Biophotonics 5, 768-776 (2012).
    • (2012) J. Biophotonics , vol.5 , pp. 768-776
    • Hovhannisyan, V.A.1    Hu, P.-S.2    Tan, H.-Y.3    Chen, S.-J.4    Dong, C.-Y.5
  • 22
    • 27844507020 scopus 로고    scopus 로고
    • Two-photon autofluorescence spectroscopy and second-harmonic generation of epithelial tissue
    • DOI 10.1364/OL.30.003045
    • Y. Wu and J. Qu, "Two-photon autofluorescence spectroscopy and second-harmonic generation of epithelial tissue," Opt. Lett. 30, 3045-3047 (2005). (Pubitemid 41655029)
    • (2005) Optics Letters , vol.30 , Issue.22 , pp. 3045-3047
    • Wu, Y.1    Qu, J.Y.2
  • 23
    • 34548830831 scopus 로고    scopus 로고
    • Coherent anti-stokes raman scattering microscopy
    • J. Cheng, "Coherent anti-Stokes Raman scattering microscopy," Appl. Spectrosc. 61, 197-208 (2007).
    • (2007) Appl. Spectrosc. , vol.61 , pp. 197-208
    • Cheng, J.1
  • 24
    • 0036280694 scopus 로고    scopus 로고
    • Laser-scanning coherent anti-Stokes Raman scattering microscopy and applications to cell biology
    • J. Cheng, Y. Jia, G. Zheng, and X. Xie, "Laser-scanning coherent anti-Stokes Raman scattering microscopy and applications to cell biology," Biophys. J. 83, 502-509 (2002). (Pubitemid 34694753)
    • (2002) Biophysical Journal , vol.83 , Issue.1 , pp. 502-509
    • Cheng, J.-X.1    Jia, Y.K.2    Zheng, G.3    Xie, X.S.4
  • 25
    • 67249092421 scopus 로고    scopus 로고
    • Raman and cars microspectroscopy of cells and tissues
    • C. Krafft, B. Dietzek, and J. Popp, "Raman and CARS microspectroscopy of cells and tissues," Analyst 134, 1046-1057 (2009).
    • (2009) Analyst , vol.134 , pp. 1046-1057
    • Krafft, C.1    Dietzek, B.2    Popp, J.3
  • 27
    • 67349265136 scopus 로고    scopus 로고
    • Chasing lipids in health and diseases by coherent anti-stokes raman scattering microscopy
    • H. Wang, Y. Fu, T. Huff, T. Le, H. Wang, and J. Cheng, "Chasing lipids in health and diseases by coherent anti-Stokes Raman scattering microscopy," Vib. Spectrosc. 50, 160-167 (2009).
    • (2009) Vib. Spectrosc. , vol.50 , pp. 160-167
    • Wang, H.1    Fu, Y.2    Huff, T.3    Le, T.4    Wang, H.5    Cheng, J.6
  • 28
    • 28044449944 scopus 로고    scopus 로고
    • Chemical imaging of tissue in vivo with video-rate coherent anti-stokes raman scattering microscopy
    • C. Evans, E. Potma, M. Puoris'haag, D. Côté, C. Lin, and X. Xie, "Chemical imaging of tissue in vivo with video-rate coherent anti-Stokes Raman scattering microscopy," Proc. Natl. Acad. Sci. USA 102, 16807 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 16807
    • Evans, C.1    Potma, E.2    Xie, X.3
  • 29
    • 60849139080 scopus 로고    scopus 로고
    • Coherent anti-stokes raman scattering imaging of lipids in cancer metastasis
    • T. Le, T. Huff, and J. Cheng, "Coherent anti-Stokes Raman scattering imaging of lipids in cancer metastasis," BMC Cancer 9, 42-56 (2009).
    • (2009) BMC Cancer , vol.9 , pp. 42-56
    • Le, T.1    Huff, T.2    Cheng, J.3
  • 30
    • 79951821202 scopus 로고    scopus 로고
    • Chemical contrast for imaging living systems: Molecular vibrations drive cars microscopy
    • J. Pezacki, J. Blake, D. Danielson, D. Kennedy, R. Lyn, and R. Singaravelu, "Chemical contrast for imaging living systems: molecular vibrations drive CARS microscopy," Nat. Chem. Biol. 7, 137-145 (2011).
    • (2011) Nat. Chem. Biol. , vol.7 , pp. 137-145
    • Pezacki, J.1    Blake, J.2    Danielson, D.3    Kennedy, D.4    Lyn, R.5    Singaravelu, R.6
  • 31
    • 33847630101 scopus 로고    scopus 로고
    • Imaging subcellular scattering contrast by using combined optical coherence and multiphoton microscopy
    • DOI 10.1364/OL.32.000503
    • S. Tang, C. Sun, T. Krasieva, Z. Chen, and B. Tromberg, "Imaging subcellular scattering contrast by using combined optical coherence and multiphoton microscopy," Opt. Lett. 32, 503-505 (2007). (Pubitemid 46363508)
    • (2007) Optics Letters , vol.32 , Issue.5 , pp. 503-505
    • Tang, S.1    Sun, C.-H.2    Krasieva, T.B.3    Chen, Z.4    Tromberg, B.J.5
  • 32
    • 84868699374 scopus 로고    scopus 로고
    • Towards automated segmentation of cells and cell nuclei in nonlinear optical microscopy
    • A. Medyukhina, T. Meyer, M. Schmitt, B. Romeike, B. Dietzek, and J. Popp, "Towards automated segmentation of cells and cell nuclei in nonlinear optical microscopy," J. Biophotonics 5, 878-888 (2012).
    • (2012) J. Biophotonics , vol.5 , pp. 878-888
    • Medyukhina, A.1    Meyer, T.2    Schmitt, M.3    Romeike, B.4    Dietzek, B.5    Popp, J.6
  • 34
    • 0026072872 scopus 로고
    • Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: Experience from a large study with long-term follow-up
    • C. Elston and I. Ellis, "Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: experience from a large study with long-term follow-up," Histopathology 19, 403-410 (1991).
    • (1991) Histopathology , vol.19 , pp. 403-410
    • Elston, C.1    Ellis, I.2
  • 36
    • 79961150696 scopus 로고    scopus 로고
    • Label-free high-resolution imaging of prostate glands and cavernous nerves using coherent anti-stokes raman scattering microscopy
    • L. Gao, H. Zhou, M. Thrall, F. Li, Y. Yang, Z. Wang, P. Luo, K. Wong, G. Palapattu, and S. Wong, "Label-free high-resolution imaging of prostate glands and cavernous nerves using coherent anti-Stokes Raman scattering microscopy," Biomed. Opt. Express 2, 915-926 (2011).
    • (2011) Biomed. Opt. Express , vol.2 , pp. 915-926
    • Gao, L.1    Zhou, H.2    Thrall, M.3    Li, F.4    Yang, Y.5    Wang, Z.6    Luo, P.7    Wong, K.8    Palapattu, G.9    Wong, S.10
  • 37
    • 1842372117 scopus 로고    scopus 로고
    • Applying watershed algorithms to the segmentation of clustered nuclei
    • DOI 10.1002/(SICI)1097-0320(19970801)28:4<289::AID-CYTO3>3.0.CO;2-7
    • N. Malpica, C. Ortiz de Solorzano, J. Vaquero, A. Santos, I. Vallcorba, J. Garcia-Sagredo, and F. del Pozo, "Applying watershed algorithms to the segmentation of clustered nuclei," Cytometry 28, 289-297 (1997). (Pubitemid 27359604)
    • (1997) Cytometry , vol.28 , Issue.4 , pp. 289-297
    • Malpica, N.1    De Solorzano, C.O.2    Vaquero, J.J.3    Santos, A.4    Vallcorba, I.5    Garcia-Sagredo, J.M.6    Del Pozo, F.7
  • 45
    • 0019397313 scopus 로고
    • Generalizing the Hough transform to detect arbitrary shapes
    • DOI 10.1016/0031-3203(81)90009-1
    • D. Ballard, "Generalizing the Hough transform to detect arbitrary shapes," Pattern Recogn. 13, 111-122 (1981). (Pubitemid 11504608)
    • (1981) Pattern Recognition , vol.13 , Issue.2 , pp. 111-122
    • Ballard Dana, H.1
  • 46
    • 0022808786 scopus 로고
    • A computational approach to edge detection
    • J. Canny, "A computational approach to edge detection," IEEE Trans. Pattern Anal. Mach. Intell. 8, 679-698 (1986).
    • (1986) IEEE Trans. Pattern Anal. Mach. Intell. , vol.8 , pp. 679-698
    • Canny, J.1
  • 47
    • 0032209062 scopus 로고    scopus 로고
    • Feature detection with automatic scale selection
    • T. Lindeberg, "Feature detection with automatic scale selection," Int. J. Comput. Vis. 30, 79-116 (1998). (Pubitemid 128517917)
    • (1998) International Journal of Computer Vision , vol.30 , Issue.2 , pp. 79-116
    • Lindeberg, T.1
  • 50
    • 0026172104 scopus 로고
    • Watersheds in digital spaces: An efficient algorithm based on immersion simulations
    • DOI 10.1109/34.87344
    • L. Vincent and P. Soille, "Watersheds in digital spaces: an efficient algorithm based on immersion simulations," IEEE Trans. Pattern Anal. Mach. Intell. 13, 583-598 (1991). (Pubitemid 21675616)
    • (1991) IEEE Transactions on Pattern Analysis and Machine Intelligence , vol.13 , Issue.6 , pp. 583-598
    • Vincent Luc1    Soille Pierre2
  • 51
    • 0000950331 scopus 로고    scopus 로고
    • The watershed transform: Definitions, algorithms and parallelization strategies
    • J. Roerdink and A. Meijster, "The watershed transform: definitions, algorithms and parallelization strategies," Fund. Inform. 41, 187-228 (2000).
    • (2000) Fund. Inform. , vol.41 , pp. 187-228
    • Roerdink, J.1    Meijster, A.2
  • 52
    • 0348134935 scopus 로고    scopus 로고
    • A Hybrid 3D Watershed Algorithm Incorporating Gradient Cues and Object Models for Automatic Segmentation of Nuclei in Confocal Image Stacks
    • G. Lin, U. Adiga, K. Olson, J. Guzowski, C. Barnes, and B. Roysam, "A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks," Cytom. A 56, 23-36 (2003). (Pubitemid 37522503)
    • (2003) Cytometry Part A , vol.56 , Issue.1 , pp. 23-36
    • Lin, G.1    Adiga, U.2    Olson, K.3    Guzowski, J.F.4    Barnes, C.A.5    Roysam, B.6
  • 53
    • 78649418588 scopus 로고    scopus 로고
    • The molecular pathobiology of metastasis to the brain: A review
    • K. D. Beasley and S. A. Toms, "The molecular pathobiology of metastasis to the brain: a review," Neurosurg. Clin. N. Am. 22, 7-14 (2011).
    • (2011) Neurosurg. Clin. N. Am. , vol.22 , pp. 7-14
    • Beasley, K.D.1    Toms, S.A.2
  • 54
    • 0037672807 scopus 로고    scopus 로고
    • Prognosis of oral pre-malignant lesions: Significance of clinical, histopathological, and molecular biological characteristics
    • J. Reibel, "Prognosis of oral pre-malignant lesions: significance of clinical, histopathological, and molecular biological characteristics," Crit. Rev. Oral Biol. M. 14, 47-62 (2003).
    • (2003) Crit. Rev. Oral Biol. M. , Issue.14 , pp. 47-62
    • Reibel, J.1


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