-
1
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
10.1038/nrg1379, 15211354
-
He L, Hannon G. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 2004, 5:522-531. 10.1038/nrg1379, 15211354.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.2
-
2
-
-
79551627496
-
A parsimonious model for gene regulation by miRNAs
-
10.1126/science.1191138, 21292970
-
Djuranovic S, Nahvi A, Green R. A parsimonious model for gene regulation by miRNAs. Science 2011, 331:550-553. 10.1126/science.1191138, 21292970.
-
(2011)
Science
, vol.331
, pp. 550-553
-
-
Djuranovic, S.1
Nahvi, A.2
Green, R.3
-
3
-
-
79960962421
-
Diverse small non-coding RNAs in RNA interference pathways
-
10.1007/978-1-61779-188-8_11, 21748640
-
Li L, Liu Y. Diverse small non-coding RNAs in RNA interference pathways. Methods Mol Biol 2011, 764:169-182. 10.1007/978-1-61779-188-8_11, 21748640.
-
(2011)
Methods Mol Biol
, vol.764
, pp. 169-182
-
-
Li, L.1
Liu, Y.2
-
4
-
-
0035955406
-
Molecular biology: Glimpses of a tiny RNA world
-
10.1126/science.1066315, 11679654
-
Ruvkun G. Molecular biology: Glimpses of a tiny RNA world. Science 2001, 294:797-799. 10.1126/science.1066315, 11679654.
-
(2001)
Science
, vol.294
, pp. 797-799
-
-
Ruvkun, G.1
-
5
-
-
84869220331
-
MicroRNAs in prostate cancer: from biomarkers to molecularly-based therapeutics
-
10.1038/pcan.2012.3, 22333688
-
Gordanpour A, Nam RK, Sugar L, Seth A. MicroRNAs in prostate cancer: from biomarkers to molecularly-based therapeutics. Prostate Cancer Prostatic Dis 2012, 15:314-319. 10.1038/pcan.2012.3, 22333688.
-
(2012)
Prostate Cancer Prostatic Dis
, vol.15
, pp. 314-319
-
-
Gordanpour, A.1
Nam, R.K.2
Sugar, L.3
Seth, A.4
-
6
-
-
77953010951
-
MicroRNAs and prostate cancer
-
10.1093/abbs/gmq038, 20539944
-
Pang Y, Young C, Yuan H. MicroRNAs and prostate cancer. Acta Biochim Biophys Sin 2010, 42:363-369. 10.1093/abbs/gmq038, 20539944.
-
(2010)
Acta Biochim Biophys Sin
, vol.42
, pp. 363-369
-
-
Pang, Y.1
Young, C.2
Yuan, H.3
-
7
-
-
80053584635
-
MicroRNAs associated with metastatic prostate cancer
-
10.1371/journal.pone.0024950, 3184096, 21980368
-
Watahiki A, Wang Y, Morris J, Dennis K, ODwyer H, Gleave M, Gout P, Wang Y. MicroRNAs associated with metastatic prostate cancer. PLoS One 2011, 6:e24950. 10.1371/journal.pone.0024950, 3184096, 21980368.
-
(2011)
PLoS One
, vol.6
-
-
Watahiki, A.1
Wang, Y.2
Morris, J.3
Dennis, K.4
ODwyer, H.5
Gleave, M.6
Gout, P.7
Wang, Y.8
-
8
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
10.1038/nrg1415, 15211354
-
He L, Hannon GJ. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 2004, 5:522-531. 10.1038/nrg1415, 15211354.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
9
-
-
33750370444
-
MicroRNA signatures in human cancers
-
10.1038/nrc1997, 17060945
-
Calin G, Croce C. MicroRNA signatures in human cancers. Nature Reviews Cancer 2006, 6:857-866. 10.1038/nrc1997, 17060945.
-
(2006)
Nature Reviews Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.1
Croce, C.2
-
11
-
-
72949093641
-
MicroRNAs as potential cancer therapeutics
-
Trang P, Weidhaas J, Slack F. MicroRNAs as potential cancer therapeutics. Oncogene 2008, 27:S52-S57.
-
(2008)
Oncogene
, vol.27
-
-
Trang, P.1
Weidhaas, J.2
Slack, F.3
-
12
-
-
40749090479
-
Widespread deregulation of microRNA expression in human prostate cancer
-
10.1038/sj.onc.1210809, 17891175
-
Ozen M, Creighton C, Ozdemir M, Ittmann M. Widespread deregulation of microRNA expression in human prostate cancer. Oncogene 2008, 27:1788-1793. 10.1038/sj.onc.1210809, 17891175.
-
(2008)
Oncogene
, vol.27
, pp. 1788-1793
-
-
Ozen, M.1
Creighton, C.2
Ozdemir, M.3
Ittmann, M.4
-
13
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4:44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
14
-
-
47549107689
-
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
-
2559980, 18834487
-
Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q. GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biology 2008, 9:S1-S4. 2559980, 18834487.
-
(2008)
Genome Biology
, vol.9
-
-
Mostafavi, S.1
Ray, D.2
Warde-Farley, D.3
Grouios, C.4
Morris, Q.5
-
15
-
-
67849126820
-
GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists
-
10.1093/nar/gkp313, 2703952, 19420064
-
Antonov A, Dietmann S, Wong P, Lutter D, Mewes H. GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. Nucleic Acids Res 2009, 37:W323-W328. 10.1093/nar/gkp313, 2703952, 19420064.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Antonov, A.1
Dietmann, S.2
Wong, P.3
Lutter, D.4
Mewes, H.5
-
16
-
-
84855171722
-
Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers
-
10.1093/bioinformatics/btr625, 3244772, 22080467
-
Chen E, Xu H, Gordonov S, Lim M, Perkins M, Ma'ayan A. Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers. Bioinformatics 2012, 28:105-111. 10.1093/bioinformatics/btr625, 3244772, 22080467.
-
(2012)
Bioinformatics
, vol.28
, pp. 105-111
-
-
Chen, E.1
Xu, H.2
Gordonov, S.3
Lim, M.4
Perkins, M.5
Ma'ayan, A.6
-
17
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
10.1093/nar/gkn923, 2615629, 19033363
-
Huang D, Sherman B, Lempicki R. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009, 37:1-13. 10.1093/nar/gkn923, 2615629, 19033363.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang, D.1
Sherman, B.2
Lempicki, R.3
-
18
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
10.1073/pnas.0506580102, 1239896, 16199517
-
Subramanian A, Tamayo P, Mootha V, Mukherjee S, Ebert B, Gillette M, Paulovich A, Pomeroy S, Golub T, Lander E, Mesirov J. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS 2005, 102:15545-15550. 10.1073/pnas.0506580102, 1239896, 16199517.
-
(2005)
PNAS
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.3
Mukherjee, S.4
Ebert, B.5
Gillette, M.6
Paulovich, A.7
Pomeroy, S.8
Golub, T.9
Lander, E.10
Mesirov, J.11
-
19
-
-
84866449583
-
EnrichNet: network-based gene set enrichment analysis
-
10.1093/bioinformatics/btr678, 3268245, 22171328
-
Glaab E, Baudot A, Krasnogor N, Schneider R, Valencia A. EnrichNet: network-based gene set enrichment analysis. Bioinformatics 2012, 28:451-457. 10.1093/bioinformatics/btr678, 3268245, 22171328.
-
(2012)
Bioinformatics
, vol.28
, pp. 451-457
-
-
Glaab, E.1
Baudot, A.2
Krasnogor, N.3
Schneider, R.4
Valencia, A.5
-
20
-
-
77958501842
-
Robust and accurate data enrichment statistics via distribution function of sum of weights
-
10.1093/bioinformatics/btq511, 2958744, 20826881
-
Stojmirovic A, Yu Y. Robust and accurate data enrichment statistics via distribution function of sum of weights. Bioinformatics 2010, 26:2752-2759. 10.1093/bioinformatics/btq511, 2958744, 20826881.
-
(2010)
Bioinformatics
, vol.26
, pp. 2752-2759
-
-
Stojmirovic, A.1
Yu, Y.2
-
21
-
-
33847129641
-
Gene network interconnectedness and the generalized topological overlap measure
-
10.1186/1471-2105-8-22, 1797055, 17250769
-
Yip A, Horvath S. Gene network interconnectedness and the generalized topological overlap measure. BMC Bioinformatics 2007, 8:22. 10.1186/1471-2105-8-22, 1797055, 17250769.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 22
-
-
Yip, A.1
Horvath, S.2
-
22
-
-
84864047487
-
Network-based functional enrichment
-
3278830, 22479706
-
Poirel C, Owens C, Murali T. Network-based functional enrichment. BMC Bioinformatics 2011, 12:S14. 3278830, 22479706.
-
(2011)
BMC Bioinformatics
, vol.12
-
-
Poirel, C.1
Owens, C.2
Murali, T.3
-
23
-
-
44649167011
-
Characterization of microRNA-regulated protein-protein interaction network
-
10.1002/pmic.200701004, 18491312
-
Hsu C, Juan H, Huang H. Characterization of microRNA-regulated protein-protein interaction network. Proteomics 2008, 8:1975-1979. 10.1002/pmic.200701004, 18491312.
-
(2008)
Proteomics
, vol.8
, pp. 1975-1979
-
-
Hsu, C.1
Juan, H.2
Huang, H.3
-
24
-
-
79961126728
-
Using network context as a filter for miRNA target prediction
-
10.1016/j.biosystems.2011.04.002, 21524683
-
Sualp M, Can T. Using network context as a filter for miRNA target prediction. Biosystems 2011, 105:201-209. 10.1016/j.biosystems.2011.04.002, 21524683.
-
(2011)
Biosystems
, vol.105
, pp. 201-209
-
-
Sualp, M.1
Can, T.2
-
25
-
-
80052028123
-
MicroRNAs coordinately regulate protein complexes
-
10.1186/1752-0509-5-136, 3170341, 21867514
-
Sass S, Dietmann S, Burk U, Brabletz S, Lutter D, Kowarsch A, Klaus F, Mayer K, Brabletz T, Ruepp A, Theis F, Wang Y. MicroRNAs coordinately regulate protein complexes. BMC Systems Biology 2011, 5:136. 10.1186/1752-0509-5-136, 3170341, 21867514.
-
(2011)
BMC Systems Biology
, vol.5
, pp. 136
-
-
Sass, S.1
Dietmann, S.2
Burk, U.3
Brabletz, S.4
Lutter, D.5
Kowarsch, A.6
Klaus, F.7
Mayer, K.8
Brabletz, T.9
Ruepp, A.10
Theis, F.11
Wang, Y.12
-
27
-
-
34250805982
-
MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
-
10.1016/j.molcel.2007.06.017, 17612493
-
Grimson A, Farh K, Johnston W, Garrett-Engele P, Lim L, Bartel D. MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing. Molecular Cell 2007, 27:91-105. 10.1016/j.molcel.2007.06.017, 17612493.
-
(2007)
Molecular Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.2
Johnston, W.3
Garrett-Engele, P.4
Lim, L.5
Bartel, D.6
-
28
-
-
78651266827
-
MiRTarBase: a database curates experimentally validated microRNA target interactions
-
10.1093/nar/gkq1107, 3013699, 21071411
-
Hsu S, Lin F, Wu W, Liang C, Huang W, Chan W, Tsai W, Chen G, Lee C, Chiu C, Chien C, Wu M, Huang C, Tsou A, Huang H. miRTarBase: a database curates experimentally validated microRNA target interactions. Nucleic Acids Res 2011, 39:D163-D169. 10.1093/nar/gkq1107, 3013699, 21071411.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Hsu, S.1
Lin, F.2
Wu, W.3
Liang, C.4
Huang, W.5
Chan, W.6
Tsai, W.7
Chen, G.8
Lee, C.9
Chiu, C.10
Chien, C.11
Wu, M.12
Huang, C.13
Tsou, A.14
Huang, H.15
-
29
-
-
58149186499
-
MiRecords: an integrated resource for microRNA target interactions
-
10.1093/nar/gkn851, 2686554, 18996891
-
Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T. miRecords: an integrated resource for microRNA target interactions. Nucleic Acids Res 2009, 37:D105-D110. 10.1093/nar/gkn851, 2686554, 18996891.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
Li, T.6
-
30
-
-
77952310528
-
A human functional protein interaction network and its application to cancer data analysis
-
10.1186/gb-2010-11-5-r53, 2898064, 20482850
-
Wu G, Feng X, Stein L. A human functional protein interaction network and its application to cancer data analysis. Genome Biology 2010, 11:R53. 10.1186/gb-2010-11-5-r53, 2898064, 20482850.
-
(2010)
Genome Biology
, vol.11
-
-
Wu, G.1
Feng, X.2
Stein, L.3
-
31
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
10.1073/pnas.091062498, 33173, 11309499
-
Tusher V, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci 2001, 98:5116-5121. 10.1073/pnas.091062498, 33173, 11309499.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 5116-5121
-
-
Tusher, V.1
Tibshirani, R.2
Chu, G.3
-
32
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
10.1093/nar/gng015, 150247, 12582260
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 2003, 31:e15. 10.1093/nar/gng015, 150247, 12582260.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
33
-
-
58149179989
-
MiR2Disease: a manually curated database for microRNA deregulation in human disease
-
10.1093/nar/gkn714, 2686559, 18927107
-
Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y. miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res 2009, 37:D98-104. 10.1093/nar/gkn714, 2686559, 18927107.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jiang, Q.1
Wang, Y.2
Hao, Y.3
Juan, L.4
Teng, M.5
Zhang, X.6
Li, M.7
Wang, G.8
Liu, Y.9
-
34
-
-
54849408182
-
An analysis of human microRNA and disease associations
-
10.1371/journal.pone.0003420, 2559869, 18923704
-
Lu M, Zhang Q, Deng M, Miao J, Guo Y, Gao W, Cui Q. An analysis of human microRNA and disease associations. PLoS One 2008, 3:e3420. 10.1371/journal.pone.0003420, 2559869, 18923704.
-
(2008)
PLoS One
, vol.3
-
-
Lu, M.1
Zhang, Q.2
Deng, M.3
Miao, J.4
Guo, Y.5
Gao, W.6
Cui, Q.7
-
35
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
10.1038/nature03315, 15685193
-
Lim L, Lau N, Garrett-Engele P, Grimson A, Schelter J, Castle J, Bartel D, Linsley P, Johnson J. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 2005, 433:769-773. 10.1038/nature03315, 15685193.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.1
Lau, N.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.5
Castle, J.6
Bartel, D.7
Linsley, P.8
Johnson, J.9
-
36
-
-
84860363146
-
MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer
-
10.1093/nar/gkr1222, 3333883, 22210864
-
Hudson RS, Yi M, Esposito D, Watkins SK, Hurwitz AA, Yfantis HG, Lee DH, Borin JF, Naslund MJ, Alexander RB, Dorsey TH, Stephens RM, Croce CM, Ambs S. MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer. Nucleic Acids Res 2012, 40:3689-3703. 10.1093/nar/gkr1222, 3333883, 22210864.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3689-3703
-
-
Hudson, R.S.1
Yi, M.2
Esposito, D.3
Watkins, S.K.4
Hurwitz, A.A.5
Yfantis, H.G.6
Lee, D.H.7
Borin, J.F.8
Naslund, M.J.9
Alexander, R.B.10
Dorsey, T.H.11
Stephens, R.M.12
Croce, C.M.13
Ambs, S.14
-
37
-
-
84867401829
-
Androgen-regulated miR-32 targets BTG2 and is overexpressed in castration-resistant prostate cancer
-
10.1038/onc.2011.624, 22266859
-
Jalava S, Urbanucci A, Latonen L, Waltering K, Sahu B, Jnne O, Seppl J, Lhdesmki H, Tammela T, Visakorpi T. Androgen-regulated miR-32 targets BTG2 and is overexpressed in castration-resistant prostate cancer. Oncogene 2012, 31:4460-71. 10.1038/onc.2011.624, 22266859.
-
(2012)
Oncogene
, vol.31
, pp. 4460-4471
-
-
Jalava, S.1
Urbanucci, A.2
Latonen, L.3
Waltering, K.4
Sahu, B.5
Jnne, O.6
Seppl, J.7
Lhdesmki, H.8
Tammela, T.9
Visakorpi, T.10
-
38
-
-
34447132924
-
MicroRNA Expression Profiling in Prostate Cancer
-
10.1158/0008-5472.CAN-07-0533, 17616669
-
Porkka K, Pfeiffer M, Waltering K, Vessella R, Tammela T, Visakorpi T. MicroRNA Expression Profiling in Prostate Cancer. Cancer Research 2007, 67:6130. 10.1158/0008-5472.CAN-07-0533, 17616669.
-
(2007)
Cancer Research
, vol.67
, pp. 6130
-
-
Porkka, K.1
Pfeiffer, M.2
Waltering, K.3
Vessella, R.4
Tammela, T.5
Visakorpi, T.6
-
39
-
-
77954255681
-
Integrative Genomic Profiling of Human Prostate Cancer
-
10.1016/j.ccr.2010.05.026, 3198787, 20579941
-
Taylor B, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver B, Arora V, Kaushik P, Cerami E, Reva B, Antipin Y, Mitsiades N, Landers T, Dolgalev I, Major J, Wilson M, Socci N, Lash A, Heguy A, Eastham J, Scher H, Reuter V, Scardino P, Sander C, Sawyers C, Gerald W. Integrative Genomic Profiling of Human Prostate Cancer. Cancer Cell 2010, 18:11-22. 10.1016/j.ccr.2010.05.026, 3198787, 20579941.
-
(2010)
Cancer Cell
, vol.18
, pp. 11-22
-
-
Taylor, B.1
Schultz, N.2
Hieronymus, H.3
Gopalan, A.4
Xiao, Y.5
Carver, B.6
Arora, V.7
Kaushik, P.8
Cerami, E.9
Reva, B.10
Antipin, Y.11
Mitsiades, N.12
Landers, T.13
Dolgalev, I.14
Major, J.15
Wilson, M.16
Socci, N.17
Lash, A.18
Heguy, A.19
Eastham, J.20
Scher, H.21
Reuter, V.22
Scardino, P.23
Sander, C.24
Sawyers, C.25
Gerald, W.26
more..
-
40
-
-
77953230653
-
Diet, microRNAs and prostate cancer
-
10.1007/s11095-010-0086-x, 2872011, 20221895
-
Saini S, Majid S, Dahiya R. Diet, microRNAs and prostate cancer. Pharm Res 2010, 27:1014-1026. 10.1007/s11095-010-0086-x, 2872011, 20221895.
-
(2010)
Pharm Res
, vol.27
, pp. 1014-1026
-
-
Saini, S.1
Majid, S.2
Dahiya, R.3
-
41
-
-
84864464973
-
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways
-
10.1093/nar/gks494, 3394305, 22649059
-
Vlachos I, Kostoulas N, Vergoulis T, Georgakilas G, Reczko M, Maragkakis M, Paraskevopoulou M, Prionidis K, Dalamagas T, Hatzigeorgiou A. DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res 2012, 40:W498-504. 10.1093/nar/gks494, 3394305, 22649059.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Vlachos, I.1
Kostoulas, N.2
Vergoulis, T.3
Georgakilas, G.4
Reczko, M.5
Maragkakis, M.6
Paraskevopoulou, M.7
Prionidis, K.8
Dalamagas, T.9
Hatzigeorgiou, A.10
|