Electronic data capture, representation, and applications for neuroimaging

Frontiers in Neuroinformatics

Volumn 6, Issue MAY, 2012, Pages

  Turner, Jessica A ^a   Van Horn, John Darrell ^b  

^a UNIVERSITY OF NEW MEXICO   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATION; BEHAVIOR; CLINICAL ASSESSMENT; COGNITION; COMPUTER INTERFACE; COMPUTER PROGRAM; DATA BASE; EDITORIAL; IMAGE QUALITY; INFORMATION DISSEMINATION; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INFORMATION SYSTEM; MEDICAL LITERATURE; MEDICAL RESEARCH; NEUROIMAGING; NEUROPHYSIOLOGY; QUALITY CONTROL;

EID: 84886749866     PISSN: 16625196     EISSN: None     Source Type: Journal    
DOI: 10.3389/fninf.2012.00016     Document Type: Editorial

References (18)

1. Ashish, N., Ambite, J. L., Muslea, M., and Turner, J. A. (2010). Neuroscience data integration through mediation: an (F)BIRN Case Study. Front. Neuroinform. 4:118. doi: 10.3389/ fninf.2010.00118
2. Bug, W. J., Ascoli, G. A., Grethe, J. S., Gupta, A., Fennema-Notestine, C., Laird, A. R., Larson, S. D., Rubin, D., Shepherd, G. M., Turner, J. A., and Martone, M. E. (2008). The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics 6, 175-194.
3. Dinov, I., Lozev, K., Petrosyan, P., Liu, Z., Eggert, P., Pierce, J., Zamanyan, A., Chakrapani, S., Van Horn, J., Parker, D. S., Magsipoc, R., Leung, K., Gutman, B., Woods, R., and Toga, A. (2010). Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline. PLoS ONE 5, e13070. doi: 10.1371/journal. pone.0013070
4. Gadde, S., Aucoin, N., Grethe, J. S., Keator, D. B., Marcus, D. S., and Pieper, S. (2011). XCEDE: an extensible schema for biomedical data. Neuroinformatics 10, 19-32.
5. Gupta, A., Bug, W., Marenco, L., Qian, X., Condit, C., Rangarajan, A., Muller, H. M., Miller, P. L., Sanders, B., Grethe, J. S., Astakhov, V., Shepherd, G., Sternberg, P. W., and Martone, M. E. (2008). Federated access to het erogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics 6, 205-217.
6. Helmer, K. G., Ambite, J. L., Ames, J., Ananthakrishnan, R., Burns, G., Chervenak, A. L., Foster, I., Liming, L., Keator, D., Macciardi, F., Madduri, R., Navarro, J. P., Potkin, S., Rosen, B., Ruffins, S., Schuler, R., Turner, J. A., Toga, A., Williams, C., and Kesselman, C. (2011). Enabling collaborative research using the Biomedical Informatics Research Network (BIRN). J. Am. Med. Inform. Assoc. 18, 416-422.
7. Keator, D. B., Grethe, J. S., Marcus, D., Ozyurt, B., Gadde, S., Murphy, S., Pieper, S., Greve, D., Notestine, R., Bockholt, H. J., Papadopoulos, P., Function, B., Morphometry, B., and Coordinating, B. (2008). A national human neuroimaging col-laboratory enabled by the Biomedical Informatics Research Network (BIRN). IEEE Trans. Inf. Technol. Biomed. 12, 162-172.
8. Keator, D. B., Wei, D., Gadde, S., Bockholt, J., Grethe, J. S., Marcus, D., Aucoin, N., and Ozyurt, I. B. (2009). Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid. Front. Neuroinform. 3:30. doi: 10.3389/neuro.11.030.2009
9. Marcus, D. S., Olsen, T. R., Ramaratnam, M., and Buckner, R. L. (2007). The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics 5, 11-34.
10. Turner, J. A., and Laird, A. R. (2011). The cognitive paradigm ontology: design and application. Neuroinformatics 10, 57-66.
11. Turner, J. A., Mejino, J. L., Brinkley, J. F., Detwiler, L. T., Lee, H. J., Martone, M. E., and Rubin, D. L. (2010). Application of neuroanatomical ontologies for neuroimaging data annotation. Front. Neuroinform. 4:10. doi: 10.3389/fninf.2010.00010
12. Van Horn, J. D., and Ball, C. A. (2008). Domain-specific data sharing in neuroscience: what do we have to learn from each other? Neuroinformatics 2, 117-121.
13. Van Horn, J. D., Dobson, J., Woodward, J., Wilde, M., Zhao, Y., Voeckler, J., and Foster, I. (2006). "Grid-based computing and the future of neuroscience computation, " in Methods in Mind, eds C. Senior, T. Russell, and M. S. Gazzaniga (Cambridge: MIT Press), 141-170.
14. Van Horn, J. D., Grafton, S. T., Rockmore, D., and Gazzaniga, M. S. (2004). Sharing neuroimaging studies of human cognition. Nat. Neurosci. 7, 473-481.
15. Van Horn, J. D., Grethe, J. S., Kostelec, P., Woodward, J. B., Aslam, J. A., Rus, D., Rockmore, D., and Gazzaniga, M. S. (2001). The Functional Magnetic Resonance Imaging Data Center (fMRIDC): the challenges and rewards of large-scale databas-ing of neuroimaging studies. Philos. Trans. R. Soc. Lond. B Biol. Sci. 356, 1323-1339.
16. Van Horn, J. D., and Ishai, A. (2007). Mapping the human brain: new insights from FMRI data sharing. Neuroinformatics 5, 146-153.
17. Van Horn, J. D., and Toga, A. W. (2009a). Is it time to re-prioritize neuroimaging databases and digital repositories? Neuroimage 47, 1720-1734.
18. Van Horn, J. D., and Toga, A. W. (2009b). Multisite neuroimaging trials. Curr. Opin. Neurol. 22, 370-378.