XCEDE: An extensible schema for biomedical data

Neuroinformatics

Volumn 10, Issue 1, 2012, Pages 19-32

  Gadde, Syam ^a   Aucoin, Nicole ^b   Grethe, Jeffrey S ^c   Keator, David B ^d   Marcus, Daniel S ^e   Pieper, Steve ^f  

^a DUKE UNIVERSITY   (United States)

^b BRIGHAM AND WOMEN S HOSPITAL   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f Isomics Inc   (United States)

Author keywords

Biomedical technology; Database; Schema; XML

Indexed keywords

ARTICLE; COMPUTER LANGUAGE; DATA BASE; HUMAN; INFORMATION DISSEMINATION; MEDICAL RESEARCH; METHODOLOGY;

BIOMEDICAL RESEARCH; DATABASE MANAGEMENT SYSTEMS; HUMANS; INFORMATION DISSEMINATION; PROGRAMMING LANGUAGES;

EID: 84858057633     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-011-9119-9     Document Type: Article

References (24)

1. Blackburn K. Lazzarini A. et al. (1999). XSIL: Extensible Scientific Interchange Language. 7th International Conference of High- Performance Computing and Networking Springer.
2. Bray T. Hollander D. et al. (2006a). Namespaces in XML 1.0 (2nd edition) W3C.
3. Bray T. Paoli J. et al. (2006b). Extensible Markup Language (XML) 1.0 (4th edition) W3C.
4. Clark J. (1999). XSL Transformations (XSLT) version 1.0 W3C.
5. Clark J. DeRose S. (1999). XML Path Language (XPath) version 1.0 W3C.
6. Clunie D. (2000). DICOM structured reporting. Bangor: PixelMed.
7. Dolin R. H. Alschuler L. et al. (2006). HL7 clinical document architecture release 2. Journal of the American Medical Informatics Association 13(1) 30-39. (Pubitemid 41828333)
8. Fenstermacher D. Street C. et al. (2005). The Cancer Biomedical Informatics Grid (caBIG™). Conf Proc IEEE Eng Med Biol Soc.
9. Fischl B. Salat D. H. et al. (2002). Whole brain segmentation. Automated labeling of neuroanatomical structures in the human brain. Neuron 33(3) 341-355. (Pubitemid 34162530)
10. Gering D. T. Nabavi A. et al. (1999). An integrated visualization system for surgical planning and guidance using image fusion and interventional imaging. Conf Med Image Comput Comput Assist Interv (MICCAI) Cambridge England.
11. Hors A. L. Hégaret P. L. et al. (2004). Document Object Model (DOM) level 3 core specification version 1.0 W3C.
12. ISO/IEC (2006). Document Schema Definition Languages (DSDL)- part 3: rule-based validation-Schematron. ISO/IEC19757-3:2006.
13. Keator D. B. Gadde S. et al. (2006). A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels. Neuroinformatics 4(2) 199-211.
14. Keator D. B. Grethe J. S. et al. (2008). A national human neuroimaging collaboratory enabled by the biomedical informatics research network. IEEE Transactions on Information Technology in Biomedicine 12(2) 162-172. (Pubitemid 351460485)
15. Kunze J. Baker T. (2007). The Dublin core metadata element set. RFC 5013 from http://www.ietf.org/rfc/rfc5013.txt.
16. Lohrey J. M. Killeen N. E. B. et al. (2009). An integrated object model and method framework for subject-centric e-Research applications. Frontiers in Neuroinformatics 3 19.
17. Marcus D. S. Olsen T. R. et al. (2007). The extensible neuroimaging archive toolkit (XNAT): an informatics platform for managing exploring and sharing neuroimaging data. Neuroinformatics 5 11-34.
18. Myers J. D. Chappell A. R. et al. (2003). Re-integrating the research record. Computing in Science and Engineering.
19. Oldfield R. C. (1971). The assessment and analysis of handedness: the Edinburgh inventory. Neuropsychologia 9(1) 97-113.
20. Ozyurt I. B. Keator D. B. et al. (2010). Federated web-accessible clinical data management within an extensible neuroimaging database. Neuroinformatics 8(4) 231-249.
21. Rubin D. L Mongkolwat P. et al. (2008). Medical imaging on the semantic web: Annotation and image markup. 2008 AAAI Spring Symposium Series Semantic Scientific Knowledge Integration. Stanford University.
22. Sufi S. Mathews B. (2004). CCLRC scientific metadata model: version 2. CCLRC Technical Report DL-TR-2004-001 Retrieved Feb 25 2011 from http://epubs.cclrc.ac.uk/work-details?w=30324.
23. Talairach J. & Tournoux P. (1988). Co-planar stereotaxic atlas of the human brain. New York: Thieme Medical Publishers.
24. Thompson H. S. Beech D. et al. (2004). XML schema 1.0 W3C.