Characterizing metabolic interactions in a clostridial co-culture for consolidated bioprocessing

BMC Biotechnology

Volumn 13, Issue , 2013, Pages

  Salimi, Fahimeh ^a   Mahadevan, Radhakrishnan ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Clostridial co culture; Clostridium acetobutylicum; Clostridium cellulolyticum; Consolidated bioprocessing; qPCR analysis

Indexed keywords

CLOSTRIDIAL CO CULTURES; CLOSTRIDIUM ACETOBUTYLICUM; CLOSTRIDIUM CELLULOLYTICUM; CONSOLIDATED BIO-PROCESSING; QPCR ANALYSIS;

CELLULOSE; CLOSTRIDIUM; POLYMERASE CHAIN REACTION;

METABOLISM;

BUTANOL; CELLULOSE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; CLOSTRIDIUM ACETOBUTYLICUM; CLOSTRIDIUM CELLULOLYTICUM; COCULTURE; CONTROLLED STUDY; GROWTH RATE; MICROBIAL ACTIVITY; MONOCULTURE; NONHUMAN; PH; POLYMERASE CHAIN REACTION;

CLOSTRIDIUM ACETOBUTYLICUM; CLOSTRIDIUM CELLULOLYTICUM;

BIOFUELS; BIOMASS; BUTANOLS; CELLULOSE; CLOSTRIDIUM ACETOBUTYLICUM; CLOSTRIDIUM CELLULOLYTICUM; COCULTURE TECHNIQUES; CULTURE MEDIA; FERMENTATION; HYDROGEN-ION CONCENTRATION; PYRUVIC ACID;

EID: 84886741528     PISSN: None     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/1472-6750-13-95     Document Type: Article

References (43)

1. Lynd LR, Weimer PJ, Van Zyl WH, Pretorius IS. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 2002, 66:506-577. 10.1128/MMBR.66.3.506-577.2002, 120791, 12209002.
2. Lynd LR, Van Zyl WH, McBride JE, Laser M. Consolidated bioprocessing of cellulosic biomass: an update. Curr Opin Biotechnol 2005, 16:577-583. 10.1016/j.copbio.2005.08.009, 16154338.
3. Lynd LR, Currie D, Ciazza N, Herring C, Orem N. Consolidated bioprocessing of cellulosic biomass to ethanol using thermophylic bacteria. Bioenergy, Part I Biotechnology, Volume 5 2008, 55-74. Washington, DC: ASM Press, Wall JD, Harwwod CS, Demain A.
4. Olson DG, McBride JE, Joe Shaw A, Lynd LR. Recent progress in consolidated bioprocessing. Curr Opin Biotechnol 2012, 23:396-405. 10.1016/j.copbio.2011.11.026, 22176748.
5. Hasunuma T, Okazaki F, Okai N, Hara KY, Ishii J, Kondo A. A review of enzymes and microbes for lignocellulosic biorefinery and the possibility of their application to consolidated bioprocessing technology. Bioresour Technol 2013, 135:513-522.
6. Shaw AJ, Podkaminer KK, Desai SG, Bardsley JS, Rogers SR, Thorne PG, Hogsett DA, Lynd LR. Metabolic engineering of a thermophilic bacterium to produce ethanol at high yield. Proc Natl Acad Sci U S A 2008, 105:13769-13774. 10.1073/pnas.0801266105, 2544529, 18779592.
7. Argyros DA, Tripathi SA, Barrett TF, Rogers SR, Feinberg LF, Olson DG, Foden JM, Miller BB, Lynd LR, Hogsett DA, Caiazza NC. High ethanol Titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes. Appl Environ Microbiol 2011, 77:8288-8294. 10.1128/AEM.00646-11, 3233045, 21965408.
8. Yang SJ, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MW. Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725. Appl Environ Microbiol 2009, 75:4762-4769. 10.1128/AEM.00236-09, 2708433, 19465524.
9. Svetlitchnyi VA, Kensch O, Falkenhan DA, Korseska SG, Lippert N, Prinz M, Sassi J, Schickor A, Curvers S. Single-step ethanol production from lignocellulose using novel extremely thermophilic bacteria. Biotechnology for Biofuels, Volume 6 2013
10. Li Y, Tschaplinski TJ, Engle NL, Hamilton CY, Rodriguez M, Liao JC, Schadt CW, Guss AM, Yang Y, Graham DE. Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations. Biotechnolofy for Biofuels, Volume 5 2012
11. Higashide W, Li Y, Yang Y, Liao JC. Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose. Appl Environ Microbiol 2011, 77:2727-2733. 10.1128/AEM.02454-10, 3126361, 21378054.
12. Hasunuma T, Kondo A. Development of yeast cell factories for consolidated bioprocessing of lignocellulose to bioethanol through cell surface engineering. Biotechnol Adv 2012, 30:1207-1218.
13. Yu EKC, Deschatelets L, Saddler JN. The bioconversion of wood hydrolyzates to butanol and butanediol. Biotechnol Lett 1984, 6:327-332.
14. Fond O, Engasser J-M, Matta-El-Amouri G, Petitdemange H. Acetone butanol fermentation on glucose and xylose. I. Regulation and kinetics in batch cultures. Biotechnol Bioeng 1986, 28:160-166. 10.1002/bit.260280203, 18555310.
15. Ali MK, Rudolph FB, Bennett GN. Thermostable xylanase10B from Clostridium acetobutylicum ATCC824. J Ind Microbiol Biotechnol 2004, 31:229-234.
16. Lee J, Jang YS, Choi SJ, Im JA, Song H, Cho JH, Seung DY, Terry Papoutsakis E, Bennett GN, Lee SY. Metabolic engineering of clostridium acetobutylicum ATCC 824 for isopropanol-butanol-ethanol fermentation. Appl Environ Microbiol 2012, 78:1416-1423. 10.1128/AEM.06382-11, 3294493, 22210214.
17. Demain AL, Newcomb M, Wu JHD. Cellulase, clostridia, and ethanol. Microbiol Mol Biol Rev 2005, 69:124-154. 10.1128/MMBR.69.1.124-154.2005, 1082790, 15755956.
18. Jones DT, Woods DR. Acetone-butanol fermentation revisited. Microbiol Rev 1986, 50:484-524. 373084, 3540574.
19. Petitdemange E, Fond O, Caillet F, Petitdemange H, Gay R. A novel one step process for cellulose fermentation using mesophilic cellulolytic and glycolytic Clostridia. Biotechnology Letters 1983, 5:119-124.
20. Mitchell WJ, Albasheri KA, Yazdanian M. Factors affecting utilization of carbohydrates by clostridia. FEMS Microbiol Rev 1995, 17:317-329.
21. Desvaux M, Guedeon E, Petitdemange H. Metabolic flux in cellulose batch and cellulosefed continuous cultures of Clostridium cellulolyticum in response to acidic environment. Microbiology 2001, 147:1461-1471.
22. Desvaux M, Guedon E, Petitdemange H. Cellulose catabolism by Clostridium cellulolyticum growing in batch culture on defined medium. Appl Environ Microbiol 2000, 66:2461-2470. 10.1128/AEM.66.6.2461-2470.2000, 110559, 10831425.
23. Lee SF, Forsberg CW, Gibbins LN. Cellulolytic activity of Clostridium acetobutylicum. Appl Environ Microbiol 1985, 50:220-228. 238607, 16346847.
24. Sabathe F, Blaich A, Soucaille P. Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum. FEMS Microbiol Lett 2002, 217:15-22. 10.1111/j.1574-6968.2002.tb11450.x, 12445640.
25. Guedon E, Desvaux M, Payot S, Petitdemange H. Growth inhibition of Clostridium cellulolyticum by an inefficiently regulated carbon flow. Microbiology 1999, 145:1831-1838. 10.1099/13500872-145-8-1831, 10463149.
26. Lu Y, Zhang YHP, Lynd LR. Enzyme-microbe synergy during cellulose hydrolysis by Clostridium thermocellum. Proc Natl Acad Sci U S A 2006, 103:16165-16169. 10.1073/pnas.0605381103, 1637554, 17060624.
27. Zhang YHP, Lynd LR. Toward an aggregated understanding of enzymatic hydrolysis of cellulose: noncomplexed cellulase systems. Biotechnol Bioeng 2004, 88:797-824. 10.1002/bit.20282, 15538721.
28. Hu J, Arantes V, Saddler JN. The enhancement of enzymatic hydrolysis of lignocellulosic substrates by the addition of accessory enzymes such as xylanase: is it an additive or synergistic effect?. Biotechnology for Biofuels, Volume 4 2011
29. Russell JB, Wilson DB. Why Are Ruminal Cellulolytic Bacteria Unable to Digest Cellulose at Low pH?. J Dairy Sci 1996, 79:1503-1509. 10.3168/jds.S0022-0302(96)76510-4, 8880476.
30. Flythe MD, Russell JB. Fermentation acids inhibit amino acid deamination by Clostridium sporogenes MD1 via mechanism involving a decline in intracellular glutamate rather than protonmotive force. Microbiology 2006, 152:2619-2624. 10.1099/mic.0.29006-0, 16946257.
31. Roe AJ, McLaggan D, Davidson I, O'Byrne C, Booth IR. Perturbation of anion balance during inhibition of growth of Escherichia coli by weak acids. J Bacteriol 1998, 180:767-772. 106953, 9473028.
32. Roe AJ, O'Byrne C, McLaggan D, Booth IR. Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity. Microbiology 2002, 148:2215-2222.
33. Bahl H, Gottwald M, Kuhn A, Rale V, Andersch W, Gottschalk G. Nutritional factors affecting the ratio of solvents produced by clostridium-acetobutylicum. Appl Environ Microbiol 1986, 52:169-172. 203431, 16347104.
34. Desvaux M. Clostridium cellulolyticum: Model organism of mesophilic cellulolytic clostridia. FEMS Microbiol Rev 2005, 29:741-764. 10.1016/j.femsre.2004.11.003, 16102601.
35. Levin DB, Islam R, Cicek N, Sparling R. Hydrogen production by Clostridium thermocellum 27405 from cellulosic biomass substrates. Int J Hydrogen Energ 2006, 31:1496-1503.
36. Guedon E, Payot S, Desvaux M, Petitdemange H. Carbon and electron flow in Clostridium cellulolyticum grown in chemostat culture on synthetic medium. J Bacteriol 1999, 181:3262-3269. 93785, 10322031.
37. Guedon E, Desvaux M, Petitdemange H. Improvement of cellulolytic properties of Clostridium cellulolyticum by metabolic engineering. Appl Environ Microbiol 2002, 68:53-58. 10.1128/AEM.68.1.53-58.2002, 126586, 11772608.
38. Janati-Idrissi R, Junelles AM, El Kanouni A, Petitdemange H, Gay R. Pyruvate fermentation by Clostridium acetobutylicum. Biochem Cell Biol 1989, 67:735-739. 10.1139/o89-110, 2556163.
39. Jiao Y, Navid A, Stewart BJ, McKinlay JB, Thelen MP, Pett-Ridge J. Syntrophic metabolism of a co-culture containing Clostridium cellulolyticum and Rhodopseudomonas palustris for hydrogen production. International Journal of Hydrogen Energy 2012, 37:11719-11726.
40. Junelles AM, Janati-Idrissi R, Petitdemange H, Gay R. Effect of pyruvate on glucose metabolism in Clostridium acetobutylicum. Biochimie 1987, 69:1183-1190. 10.1016/0300-9084(87)90145-3, 3129023.
41. Updegraff DM. Semimicro determination of cellulose inbiological materials. Anal Biochem 1969, 32:420-424. 10.1016/S0003-2697(69)80009-6, 5361396.
42. Salimi F, Zhuang K, Mahadevan R. Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing. Biotechnol J 2010, 5:726-738. 10.1002/biot.201000159, 20665645.
43. ClustalW2 http://www.ebi.ac.uk/Tools/msa/clustalw2/.