Nucleation dynamics of active particles

Journal of Physical Chemistry B

Volumn 117, Issue 42, 2013, Pages 12844-12849

  Shen, Tongye ^a,b   Qi, Xianghong ^a,b   Nellas, Ricky B ^a,b  

^a UNIVERSITY OF TENNESSEE   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADHESIVES; CRYSTALLIZATION; NUCLEATION; RANDOM PROCESSES; STOCHASTIC SYSTEMS;

BROWNIAN PARTICLES; CELL ASSOCIATIONS; CLUSTER TRANSITIONS; COLLECTIVE BEHAVIOR; DIMENSIONLESS PARAMETERS; IMPORTANT FEATURES; MECHANICAL INTERACTIONS; NON-EQUILIBRIUM EFFECTS;

DYNAMICS;

ARTICLE; CHEMICAL MODEL; COMPUTER SIMULATION; THERMODYNAMICS;

COMPUTER SIMULATION; MODELS, CHEMICAL; THERMODYNAMICS;

EID: 84886677706     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp402024s     Document Type: Article

References (30)

1. Fersht, A. Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding; W.H. Freeman: New York, 1999.
2. Pollard, T. D.; Earnshaw, W. C. Cell Biology; W.B. Saunders: New York, 2002.
3. Amos, L. A.; Amos, W. B. Molecules of the Cytoskeleton; Guilford Press: New York, 1991.
4. Wales, D. J. Energy Landscapes: Applications to Clusters, Biomolecules and Glasses; Cambridge Univ. Press: New York, 2004.
5. Bryngelson, J. D.; Wolynes, P. G. Spin Glasses and the Statistical Mechanics of Protein Folding Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 7524-7528
6. Wolynes, P. G.; Onuchic, J. N.; Thirumalai, D. Navigating the Folding Routes Science 1995, 267, 1619-1620
7. Osawa, M.; Anderson, D. E.; Erickson, H. P. Reconstitution of Contractile FtsZ Rings in Liposomes Science 2008, 320, 792-794
8. Bigay, J.; Gounon, P.; Robineau, S.; Antonny, B. Lipid Packing Sensed by ArfGAP1 Couples COPI Coat Disassembly to Membrane Bilayer Curvature Nature 2003, 426, 563-566
9. Zong, C.; Lu, T.; Shen, T.; Wolynes, P. G. Nonequilibrium Self-Assembly of Linear Fibers: Microscopic Treatment of Growth, Decay, Catastrophe and Rescue Phys. Biol. 2006, 3, 83-92
10. Gunst, S. J.; Fredberg, J. J. The First Three Minutes: Smooth Muscle Contraction, Cytoskeletal Events, and Soft Glasses J. Appl. Physiol. 2003, 95, 413-25
11. Bible, A.; Russell, M. H.; Alexandre, G. The Azospirillum brasilense Che1 Chemotaxis Pathway Controls the Swimming Speed Which Affects Transient Cell-to-Cell Clumping J. Bacteriol. 2012, 194, 3343-3355
12. Bible, A. N.; Stephens, B. B.; Ortega, D. R.; Xie, Z.; Alexandre, G. Function of a Chemotaxis-Like Signal Transduction Pathway in Modulating Motility, Cell Clumping, and Cell Length in the Alphaproteobacterium Azospirillum brasilense J. Bacteriol. 2008, 190, 6365-6375
13. Qi, X.; Nellas, R. B.; Byrn, M. W.; Russell, M. H.; Bible, A. N.; Alexandre, G.; Shen, T. Swimming Motility Plays a Key Role in the Stochastic Dynamics of Cell Clumping Phys. Biol. 2013, 10, 026005(1-9)
14. Vicsek, T.; Czirok, A.; Ben-Jacob, E.; Cohen, I.; Shochet, O. Novel Type of Phase Transition in a System of Self-Driven Particles Phys. Rev. Lett. 1995, 75, 1226-9
15. Ebeling, W.; Erdmann, U. Nonequilibrium Statistical Mechanics of Swarms of Driven Particles Complexity 2003, 8, 23-30
16. Shen, T.; Wolynes, P. G. Stability and Dynamics of Crystals and Glasses of Motorized Particles Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 8547-8550
17. Yang, Y.; Marceau, V.; Gompper, G. Swarm Behavior of Self-Propelled Rods and Swimming Flagella Phys. Rev. E. 2010, 82, 031904
18. Gluck, A.; Huffel, H.; Ilijic, S. Swarms with Canonical Active Brownian Motion Phys. Rev. E. 2011, 83, 051105
19. Wang, S.; Wolynes, P. G. On the Spontaneous Collective Motion of Active Matter Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 15184-15189
20. Shen, T.; Wolynes, P. G. Nonequilibrium Statistical Mechanical Models for Cytoskeletal Assembly: Towards Understanding Tensegrity in Cells Phys. Rev. E 2005, 72, 041927(1-11)
21. Smit, B. Phase Diagrams of Lennard-Jones Fluids J. Phys. Chem. 1992, 96, 8639-8640
22. van Kampen, N. G. Stochastic Process in Physics and Chemistry, revised ed.; North-Holland: New York, 1992.
23. Purcell, E. M. Life at Low Reynolds Number Am. J. Phys. 1977, 45, 3-11
24. Berg, H. C. Random Walks in Biology, 2 nd ed.; Princeton Univ. Press: Princeton, NJ, 1993.
25. Bai, F.; Branch, R. W., Jr.; Pilizota, D. V. N.; Steel, T.; Maini, B. C.; Berry, P. K.; Conformational, R. M. Spread as a Mechanism for Cooperativity in the Bacterial Flagellar Switch Science 2010, 327, 685-689
26. Celani, A.; Vergassola, M. Bacterial Strategies for Chemotaxis Response Proc. Natl. Acad. Sci. 2010, 107, 1391-1396
27. Miller, M. B.; Bassler, B. L. Quorum Sensing in Bacteria Annu. Rev. Microbiol. 2001, 55, 165-99
28. Aharony, A.; Stauffer, D. Introduction to Percolation Theory, 2 nd ed.; Taylor and Francis: New York, 1994.
29. Hoare, M. R.; Pal, P. Physical Cluster Mechanics: Statics and Energy Surfaces for Monatomic Systems Adv. Phys. 1971, 20, 161-196
30. Wales, D. J.; Doye, J. P. K. Global Optimization by Basin-Hopping and the Lowest Energy Structures of Lennard-Jones Clusters Containing up to 110 Atoms J. Phys. Chem. A 1997, 101, 5111-5116