-
2
-
-
0037425743
-
Gut flora in health and disease
-
Guarner F, Malagelada JR. 2003. Gut flora in health and disease. Lancet 361:512-519.
-
(2003)
Lancet
, vol.361
, pp. 512-519
-
-
Guarner, F.1
Malagelada, J.R.2
-
3
-
-
62149124800
-
Exploring the diversity of the bifidobacterial population in the human intestinal tract
-
Turroni F, Foroni E, Pizzetti P, Giubellini V, Ribbera A, Merusi P, Cagnasso P, Bizzarri B, de'Angelis GL, Shanahan F, van Sinderen D, Ventura M. 2009. Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl. Environ. Microbiol. 75:1534-1545.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 1534-1545
-
-
Turroni, F.1
Foroni, E.2
Pizzetti, P.3
Giubellini, V.4
Ribbera, A.5
Merusi, P.6
Cagnasso, P.7
Bizzarri, B.8
de'Angelis, G.L.9
Shanahan, F.10
van Sinderen, D.11
Ventura, M.12
-
4
-
-
35448959649
-
Identification of N-acetylhexosamine 1-kinase in the complete lacto-N-biose I/galacto-N-biose metabolic pathway in Bifidobacterium longum
-
Nishimoto M, Kitaoka M. 2007. Identification of N-acetylhexosamine 1-kinase in the complete lacto-N-biose I/galacto-N-biose metabolic pathway in Bifidobacterium longum. Appl. Environ. Microbiol. 73:6444-6449.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6444-6449
-
-
Nishimoto, M.1
Kitaoka, M.2
-
5
-
-
78650650902
-
Unique sugar metabolic pathways of bifidobacteria
-
Fushinobu S. 2010. Unique sugar metabolic pathways of bifidobacteria. Biosci. Biotechnol. Biochem. 74:2374-2384.
-
(2010)
Biosci. Biotechnol. Biochem.
, vol.74
, pp. 2374-2384
-
-
Fushinobu, S.1
-
6
-
-
40849147097
-
Mucin degradation by Bifidobacterium strains isolated from the human intestinal microbiota
-
Ruas-Madiedo P, Gueimonde M, Fernandez-Garcia M, de los Reyes-Gavilan CG, Margolles A. 2008. Mucin degradation by Bifidobacterium strains isolated from the human intestinal microbiota. Appl. Environ. Microbiol. 74:1936-1940.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 1936-1940
-
-
Ruas-Madiedo, P.1
Gueimonde, M.2
Fernandez-Garcia, M.3
de los Reyes-Gavilan, C.G.4
Margolles, A.5
-
7
-
-
80053393387
-
Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria
-
Asakuma S, Hatakeyama E, Urashima T, Yoshida E, Katayama T, Yamamoto K, Kumagai H, Ashida H, Hirose J, Kitaoka M. 2011. Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria. J. Biol. Chem. 286:34583-34592.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 34583-34592
-
-
Asakuma, S.1
Hatakeyama, E.2
Urashima, T.3
Yoshida, E.4
Katayama, T.5
Yamamoto, K.6
Kumagai, H.7
Ashida, H.8
Hirose, J.9
Kitaoka, M.10
-
8
-
-
35548975958
-
Practical preparation of lacto-N-biose I, a candidate for the bifidus factor in human milk
-
Nishimoto M, Kitaoka M. 2007. Practical preparation of lacto-N-biose I, a candidate for the bifidus factor in human milk. Biosci. Biotechnol. Biochem. 71:2101-2104.
-
(2007)
Biosci. Biotechnol. Biochem.
, vol.71
, pp. 2101-2104
-
-
Nishimoto, M.1
Kitaoka, M.2
-
9
-
-
20444393045
-
Novel putative galactose operon involving lacto-N-biose phosphorylase in Bifidobacterium longum
-
Kitaoka M, Tian J, Nishimoto M. 2005. Novel putative galactose operon involving lacto-N-biose phosphorylase in Bifidobacterium longum. Appl. Environ. Microbiol. 71:3158-3162.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3158-3162
-
-
Kitaoka, M.1
Tian, J.2
Nishimoto, M.3
-
10
-
-
78650164407
-
Complete genome sequence of Bifidobacterium bifidum S17
-
Zhurina D, Zomer A, Gleinser M, Brancaccio VF, Auchter M, Waidmann MS, Westermann C, van Sinderen D, Riedel CU. 2011. Complete genome sequence of Bifidobacterium bifidum S17. J. Bacteriol. 193:301-302.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 301-302
-
-
Zhurina, D.1
Zomer, A.2
Gleinser, M.3
Brancaccio, V.F.4
Auchter, M.5
Waidmann, M.S.6
Westermann, C.7
van Sinderen, D.8
Riedel, C.U.9
-
11
-
-
78650609691
-
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging
-
Turroni F, Bottacini F, Foroni E, Mulder I, Kim JH, Zomer A, Sanchez B, Bidossi A, Ferrarini A, Giubellini V, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Fitzgerald GF, Mills D, Margolles A, Kelly D, van Sinderen D, Ventura M. 2010. Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc. Natl. Acad. Sci. U. S. A. 107:19514-19519.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 19514-19519
-
-
Turroni, F.1
Bottacini, F.2
Foroni, E.3
Mulder, I.4
Kim, J.H.5
Zomer, A.6
Sanchez, B.7
Bidossi, A.8
Ferrarini, A.9
Giubellini, V.10
Delledonne, M.11
Henrissat, B.12
Coutinho, P.13
Oggioni, M.14
Fitzgerald, G.F.15
Mills, D.16
Margolles, A.17
Kelly, D.18
van Sinderen, D.19
Ventura, M.20
more..
-
12
-
-
84866333932
-
Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4
-
Yu DS, Jeong H, Lee DH, Kwon SK, Song JY, Kim BK, Park MS, Ji GE, Oh TK, Kim JF. 2012. Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4. J. Bacteriol. 194:4757-4758.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4757-4758
-
-
Yu, D.S.1
Jeong, H.2
Lee, D.H.3
Kwon, S.K.4
Song, J.Y.5
Kim, B.K.6
Park, M.S.7
Ji, G.E.8
Oh, T.K.9
Kim, J.F.10
-
13
-
-
76149098836
-
Distribution of in vitro fermentation ability of lacto-N-biose I, a major building block of human milk oligosaccharides, in bifidobacterial strains
-
Xiao JZ, Takahashi S, Nishimoto M, Odamaki T, Yaeshima T, Iwatsuki K, Kitaoka M. 2010. Distribution of in vitro fermentation ability of lacto-N-biose I, a major building block of human milk oligosaccharides, in bifidobacterial strains. Appl. Environ. Microbiol. 76:54-59.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 54-59
-
-
Xiao, J.Z.1
Takahashi, S.2
Nishimoto, M.3
Odamaki, T.4
Yaeshima, T.5
Iwatsuki, K.6
Kitaoka, M.7
-
14
-
-
65449168413
-
The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: a large deformation of a TIM barrel scaffold
-
Hidaka M, Nishimoto M, Kitaoka M, Wakagi T, Shoun H, Fushinobu S. 2009. The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: a large deformation of a TIM barrel scaffold. J. Biol. Chem. 284:7273-7283.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7273-7283
-
-
Hidaka, M.1
Nishimoto, M.2
Kitaoka, M.3
Wakagi, T.4
Shoun, H.5
Fushinobu, S.6
-
15
-
-
84866789452
-
Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides
-
Kitaoka, M. 2012. Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides. Adv. Nutr. 3:422S-429S.
-
(2012)
Adv. Nutr.
, vol.3
-
-
Kitaoka, M.1
-
16
-
-
0029920614
-
The Leloir pathway: a mechanistic imperative for three enzymes to change the stereochemical configuration of a single carbon in galactose
-
Frey PA. 1996. The Leloir pathway: a mechanistic imperative for three enzymes to change the stereochemical configuration of a single carbon in galactose. FASEB J. 10:461-470.
-
(1996)
FASEB J.
, vol.10
, pp. 461-470
-
-
Frey, P.A.1
-
17
-
-
0018125681
-
Presence of a single enzyme catalyzing the pyrophosphorolysis of UDP-glucose and UDP-galactose in Bifidobacterium bifidum
-
Lee LJ, Kimura A, Tochikura T. 1978. Presence of a single enzyme catalyzing the pyrophosphorolysis of UDP-glucose and UDP-galactose in Bifidobacterium bifidum. Biochim. Biophys. Acta 527:301-304.
-
(1978)
Biochim. Biophys. Acta
, vol.527
, pp. 301-304
-
-
Lee, L.J.1
Kimura, A.2
Tochikura, T.3
-
18
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97:6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
19
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, III, Smith HO. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6:343-345.
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
20
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
21
-
-
79956153138
-
Universal phosphatase-coupled glycosyltransferase assay
-
Wu ZL, Ethen CM, Prather B, Machacek M, Jiang W. 2011. Universal phosphatase-coupled glycosyltransferase assay. Glycobiology 21:727-733.
-
(2011)
Glycobiology
, vol.21
, pp. 727-733
-
-
Wu, Z.L.1
Ethen, C.M.2
Prather, B.3
Machacek, M.4
Jiang, W.5
-
22
-
-
0032829746
-
Significance of metal ions in galactose-1-phosphate uridylyltransferase: an essential structural zinc and a nonessential structural iron
-
Geeganage S, Frey PA. 1999. Significance of metal ions in galactose-1-phosphate uridylyltransferase: an essential structural zinc and a nonessential structural iron. Biochemistry 38:13398-13406.
-
(1999)
Biochemistry
, vol.38
, pp. 13398-13406
-
-
Geeganage, S.1
Frey, P.A.2
-
23
-
-
0029963321
-
Standard free energies for uridylyl group transfer by hexose-1-P uridylyltransferase and UDPhexose synthase and for the hydrolysis of uridine 5=-phosphoimidazolate
-
Arabshahi A, Ruzicka FJ, Geeganage S, Frey PA. 1996. Standard free energies for uridylyl group transfer by hexose-1-P uridylyltransferase and UDPhexose synthase and for the hydrolysis of uridine 5=-phosphoimidazolate. Biochemistry 35:3426-3428.
-
(1996)
Biochemistry
, vol.35
, pp. 3426-3428
-
-
Arabshahi, A.1
Ruzicka, F.J.2
Geeganage, S.3
Frey, P.A.4
-
24
-
-
0017882616
-
Purification and properties of hexose 1-phosphate uridylyltransferase from Bifidobacterium bifidum
-
Lee L, Kimura A, Tochikura T. 1978. Purification and properties of hexose 1-phosphate uridylyltransferase from Bifidobacterium bifidum. Agric. Biol. Chem. 42:723-730.
-
(1978)
Agric. Biol. Chem.
, vol.42
, pp. 723-730
-
-
Lee, L.1
Kimura, A.2
Tochikura, T.3
-
25
-
-
0018580044
-
Purification and properties of UDP-glucose (UDP-galactose) pyrophosphorylase from Bifidobacterium bifidum
-
Lee L, Kimura A, Tochikura T. 1979. Purification and properties of UDP-glucose (UDP-galactose) pyrophosphorylase from Bifidobacterium bifidum. J. Biochem. 86:923-928.
-
(1979)
J. Biochem.
, vol.86
, pp. 923-928
-
-
Lee, L.1
Kimura, A.2
Tochikura, T.3
-
26
-
-
33847298203
-
The molecular architecture of glucose-1-phosphate uridylyltransferase
-
Thoden JB, Holden HM. 2007. The molecular architecture of glucose-1-phosphate uridylyltransferase. Protein Sci. 16:432-440.
-
(2007)
Protein Sci.
, vol.16
, pp. 432-440
-
-
Thoden, J.B.1
Holden, H.M.2
-
27
-
-
0028181852
-
UTP: alpha-Dglucose-1-phosphate uridylyltransferase of Escherichia coli: isolation and DNA sequence of the galU gene and purification of the enzyme
-
Weissborn AC, Liu Q, Rumley MK, Kennedy EP. 1994. UTP: alpha-Dglucose-1-phosphate uridylyltransferase of Escherichia coli: isolation and DNA sequence of the galU gene and purification of the enzyme. J. Bacteriol. 176:2611-2618.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2611-2618
-
-
Weissborn, A.C.1
Liu, Q.2
Rumley, M.K.3
Kennedy, E.P.4
-
28
-
-
79955989246
-
UDP-sugar pyrophosphorylase: a new old mechanism for sugar activation
-
Kleczkowski LA, Decker D, Wilczynska M. 2011. UDP-sugar pyrophosphorylase: a new old mechanism for sugar activation. Plant Physiol. 156:3-10.
-
(2011)
Plant Physiol.
, vol.156
, pp. 3-10
-
-
Kleczkowski, L.A.1
Decker, D.2
Wilczynska, M.3
-
29
-
-
8544237035
-
UDP-sugar pyrophosphorylase with broad substrate specificity toward various monosaccharide 1-phosphates from pea sprouts
-
Kotake T, Yamaguchi D, Ohzono H, Hojo S, Kaneko S, Ishida HK, Tsumuraya Y. 2004. UDP-sugar pyrophosphorylase with broad substrate specificity toward various monosaccharide 1-phosphates from pea sprouts. J. Biol. Chem. 279:45728-45736.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 45728-45736
-
-
Kotake, T.1
Yamaguchi, D.2
Ohzono, H.3
Hojo, S.4
Kaneko, S.5
Ishida, H.K.6
Tsumuraya, Y.7
-
30
-
-
33748805215
-
Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants
-
Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. 2006. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 142:294-304.
-
(2006)
Plant Physiol.
, vol.142
, pp. 294-304
-
-
Dai, N.1
Petreikov, M.2
Portnoy, V.3
Katzir, N.4
Pharr, D.M.5
Schaffer, A.A.6
-
31
-
-
84863129904
-
Efficient one-pot multienzyme synthesis of UDP-sugars using a promiscuous UDP-sugar pyrophosphorylase from Bifidobacterium longum (BLUSP)
-
Muthana MM, Qu J, Li Y, Zhang L, Yu H, Ding L, Malekan H, Chen X. 2012. Efficient one-pot multienzyme synthesis of UDP-sugars using a promiscuous UDP-sugar pyrophosphorylase from Bifidobacterium longum (BLUSP). Chem. Commun. (Camb.) 48:2728-2730.
-
(2012)
Chem. Commun. (Camb.)
, vol.48
, pp. 2728-2730
-
-
Muthana, M.M.1
Qu, J.2
Li, Y.3
Zhang, L.4
Yu, H.5
Ding, L.6
Malekan, H.7
Chen, X.8
-
32
-
-
24644447811
-
Large-scale prediction of function shift in protein families with a focus on enzymatic function
-
Abhiman S, Sonnhammer EL. 2005. Large-scale prediction of function shift in protein families with a focus on enzymatic function. Proteins 60: 758-768.
-
(2005)
Proteins
, vol.60
, pp. 758-768
-
-
Abhiman, S.1
Sonnhammer, E.L.2
-
33
-
-
0025910489
-
Galactose utilization in Lactobacillus helveticus: isolation and characterization of the galactokinase (galK) and galactose-1-phosphate uridyl transferase (galT) genes
-
Mollet B, Pilloud N. 1991. Galactose utilization in Lactobacillus helveticus: isolation and characterization of the galactokinase (galK) and galactose-1-phosphate uridyl transferase (galT) genes. J. Bacteriol. 173:4464-4473.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 4464-4473
-
-
Mollet, B.1
Pilloud, N.2
-
34
-
-
58149193234
-
STRING 8-a global view on proteins and their functional interactions in 630 organisms
-
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C. 2009. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37:D412-D416.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
Doerks, T.7
Julien, P.8
Roth, A.9
Simonovic, M.10
Bork, P.11
von Mering, C.12
-
35
-
-
0037195083
-
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
-
Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F. 2002. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. U. S. A. 99:14422-14427.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 14422-14427
-
-
Schell, M.A.1
Karmirantzou, M.2
Snel, B.3
Vilanova, D.4
Berger, B.5
Pessi, G.6
Zwahlen, M.C.7
Desiere, F.8
Bork, P.9
Delley, M.10
Pridmore, R.D.11
Arigoni, F.12
-
36
-
-
80054028825
-
The fecal bifidobacterial transcriptome of adults: a microarray approach
-
Klaassens ES, Ben-Amor K, Vriesema A, Vaughan EE, de Vos W. 2011. The fecal bifidobacterial transcriptome of adults: a microarray approach. Gut Microbes 2:217-226.
-
(2011)
Gut Microbes
, vol.2
, pp. 217-226
-
-
Klaassens, E.S.1
Ben-Amor, K.2
Vriesema, A.3
Vaughan, E.E.4
de Vos, W.5
-
37
-
-
49449097125
-
Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide
-
Gonzalez R, Klaassens ES, Malinen E, de Vos WM, Vaughan EE. 2008. Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide. Appl. Environ. Microbiol. 74:4686-4694.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 4686-4694
-
-
Gonzalez, R.1
Klaassens, E.S.2
Malinen, E.3
de Vos, W.M.4
Vaughan, E.E.5
-
38
-
-
57749113201
-
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
-
Sela DA, Chapman J, Adeuya A, Kim JH, Chen F, Whitehead TR, Lapidus A, Rokhsar DS, Lebrilla CB, German JB, Price NP, Richardson PM, Mills DA. 2008. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proc. Natl. Acad. Sci. U. S. A. 105:18964-18969.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 18964-18969
-
-
Sela, D.A.1
Chapman, J.2
Adeuya, A.3
Kim, J.H.4
Chen, F.5
Whitehead, T.R.6
Lapidus, A.7
Rokhsar, D.S.8
Lebrilla, C.B.9
German, J.B.10
Price, N.P.11
Richardson, P.M.12
Mills, D.A.13
-
39
-
-
84864349550
-
Release and utilization of N-acetyl-D-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis
-
Garrido D, Ruiz-Moyano S, Mills DA. 2012. Release and utilization of N-acetyl-D-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis. Anaerobe 18:430-435.
-
(2012)
Anaerobe
, vol.18
, pp. 430-435
-
-
Garrido, D.1
Ruiz-Moyano, S.2
Mills, D.A.3
-
40
-
-
78349282892
-
A constitutive expression system for high-throughput screening
-
Aerts D, Verhaeghe T, De Mey M, Desmet T, Soetaert W. 2011. A constitutive expression system for high-throughput screening. Eng. Life Sci. 11:10-19.
-
(2011)
Eng. Life Sci.
, vol.11
, pp. 10-19
-
-
Aerts, D.1
Verhaeghe, T.2
De Mey, M.3
Desmet, T.4
Soetaert, W.5
-
41
-
-
77957329119
-
Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli
-
Ajikumar PK, Xiao WH, Tyo KE, Wang Y, Simeon F, Leonard E, Mucha O, Phon TH, Pfeifer B, Stephanopoulos G. 2010. Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli. Science 330:70-74.
-
(2010)
Science
, vol.330
, pp. 70-74
-
-
Ajikumar, P.K.1
Xiao, W.H.2
Tyo, K.E.3
Wang, Y.4
Simeon, F.5
Leonard, E.6
Mucha, O.7
Phon, T.H.8
Pfeifer, B.9
Stephanopoulos, G.10
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