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Volumn 19, Issue 12, 2013, Pages 2536-2545

Entourage: Visualizing relationships between biological pathways using contextual subsets

Author keywords

biological networks; biomolecular data; graphs; Pathway visualization; subsets

Indexed keywords

BIO-MOLECULAR; BIOLOGICAL NETWORKS; BIOLOGICAL PATHWAYS; CONTEXTUAL INFORMATION; GRAPHS; NOVEL VISUALIZATIONS; PATHWAY VISUALIZATION; PRIMARY FUNCTIONS;

EID: 84886449423     PISSN: 10772626     EISSN: None     Source Type: Journal    
DOI: 10.1109/TVCG.2013.154     Document Type: Article
Times cited : (46)

References (33)
  • 2
    • 4344668661 scopus 로고    scopus 로고
    • Drug repositioning: Identifying and developing new uses for existing drugs
    • T. T. Ashburn and K. B. Thor. Drug repositioning: identifying and developing new uses for existing drugs. Nature Reviews Drug Discovery, 3(8):673-683, Aug. 2004. (Pubitemid 39173508)
    • (2004) Nature Reviews Drug Discovery , vol.3 , Issue.8 , pp. 673-683
    • Ashburn, T.T.1    Thor, K.B.2
  • 3
    • 13444295058 scopus 로고    scopus 로고
    • A huge graph visualization framework
    • M. J̈unger and P. Mutzel, editors Springer Berlin Heidelberg
    • D. Auber. Tulip: A huge graph visualization framework. In M. J̈unger and P. Mutzel, editors, Graph Drawing Software, Mathematics and Visualization, pages 105-126. Springer Berlin Heidelberg, 2004.
    • (2004) Graph Drawing Software, Mathematics and Visualization , pp. 105-126
    • Auber. Tulip, D.1
  • 5
    • 0033551070 scopus 로고    scopus 로고
    • New insights into tumor suppression: PTEN suppresses tumor formation by restraining the phosphoinositide 3-kinase/AKT pathway
    • DOI 10.1073/pnas.96.8.4240
    • L. C. Cantley and B. G. Neel. New insights into tumor suppression: PTEN suppresses tumor formation by restraining the phosphoinositide 3-Kinase/AKT pathway. Proceedings of the National Academy of Sciences, 96(8):4240-4245, 1999. (Pubitemid 29190320)
    • (1999) Proceedings of the National Academy of Sciences of the United States of America , vol.96 , Issue.8 , pp. 4240-4245
    • Cantley, L.C.1    Neel, B.G.2
  • 11
    • 67849122322 scopus 로고    scopus 로고
    • VisANT 3.5: Multi-scale network visualization, analysis and inference based on the gene ontology
    • Web Server issue July
    • Z. Hu, J.-H. Hung, Y. Wang, Y.-C. Chang, C.-L. Huang, M. Huyck, and C. DeLisi. VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Research, 37(Web Server issue):W115-W121, July 2009.
    • (2009) Nucleic Acids Research , vol.37
    • Hu, Z.1    Hung, J.-H.2    Wang, Y.3    Chang, Y.-C.4    Huang, C.-L.5    Huyck, M.6    Delisi, C.7
  • 12
    • 84871727664 scopus 로고    scopus 로고
    • Guiding the interactive exploration of metabolic pathway interconnections
    • Apr.
    • I. Jusufi, C. Klukas, A. Kerren, and F. Schreiber. Guiding the interactive exploration of metabolic pathway interconnections. Information Visualization, 11(2):136-150, Apr. 2012.
    • (2012) Information Visualization , vol.11 , Issue.2 , pp. 136-150
    • Jusufi, I.1    Klukas, C.2    Kerren, A.3    Schreiber, F.4
  • 13
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • M. Kanehisa, S. Goto, Y. Sato, M. Furumichi, and M. Tanabe. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research, 40(1):D109-114, 2012.
    • (2012) Nucleic Acids Research , vol.40 , Issue.1
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 15
    • 33847320742 scopus 로고    scopus 로고
    • Dynamic exploration and editing of KEGG pathway diagrams
    • DOI 10.1093/bioinformatics/btl611
    • C. Klukas and F. Schreiber. Dynamic exploration and editing of KEGG pathway diagrams. Bioinformatics, 23(3):344-350, 2006. (Pubitemid 46323157)
    • (2007) Bioinformatics , vol.23 , Issue.3 , pp. 344-350
    • Klukas, C.1    Schreiber, F.2
  • 16
    • 70450179911 scopus 로고    scopus 로고
    • Pathway projector: Web-based zoomable pathway browser using KEGG atlas and google maps API
    • Nov.
    • N. Kono, K. Arakawa, R. Ogawa, N. Kido, K. Oshita, K. Ikegami, S. Tamaki, and M. Tomita. Pathway projector: Web-based zoomable pathway browser using KEGG atlas and google maps API. PLoS ONE, 4(11):e7710, Nov. 2009.
    • (2009) PLoS ONE , vol.4 , Issue.11
    • Kono, N.1    Arakawa, K.2    Ogawa, R.3    Kido, N.4    Oshita, K.5    Ikegami, K.6    Tamaki, S.7    Tomita, M.8
  • 20
    • 3042859147 scopus 로고    scopus 로고
    • Visualizing metabolic pathways: Comparative genomics and expression analysis
    • H. Lindroos and S. G. E. Andersson. Visualizing metabolic pathways: comparative genomics and expression analysis. Proceedings of the IEEE, 90(11):1793-1802, 2002.
    • (2002) Proceedings of the IEEE , vol.90 , Issue.11 , pp. 1793-1802
    • Lindroos, H.1    Andersson, S.G.E.2
  • 21
    • 84866261609 scopus 로고    scopus 로고
    • Chemotography for multi-target SAR analysis in the context of biological pathways
    • Sept.
    • E. Lounkine, P. Kutchukian, P. Petrone, J. W. Davies, and M. Glick. Chemotography for multi-target SAR analysis in the context of biological pathways. Bioorganic & Medicinal Chemistry, 20(18):5416-5427, Sept. 2012.
    • (2012) Bioorganic & Medicinal Chemistry , vol.20 , Issue.18 , pp. 5416-5427
    • Lounkine, E.1    Kutchukian, P.2    Petrone, P.3    Davies, J.W.4    Glick, M.5
  • 25
    • 77951548790 scopus 로고    scopus 로고
    • A novel grid-based visualization approach for metabolic networks with advanced Focus & Context view
    • D. Eppstein and E. Gansner, editors Springer Berlin Heidelberg
    • M. Rohrschneider, C. Heine, A. Reichenbach, A. Kerren, and G. Scheuermann. A novel grid-based visualization approach for metabolic networks with advanced Focus & Context view. In D. Eppstein and E. Gansner, editors, Graph Drawing, volume 5849 of Lecture Notes in Computer Science, pages 268-279. Springer Berlin Heidelberg, 2010.
    • (2010) Graph Drawing Volume 5849 of Lecture Notes in Computer Science , pp. 268-279
    • Rohrschneider, M.1    Heine, C.2    Reichenbach, A.3    Kerren, A.4    Scheuermann, G.5
  • 26
    • 84993730733 scopus 로고    scopus 로고
    • Visualizing biological pathways: Requirements analysis, systems evaluation and research agenda
    • P. Saraiya, C. North, and K. Duca. Visualizing biological pathways: requirements analysis, systems evaluation and research agenda. Information Visualization, 4(3):191-205, 2005.
    • (2005) Information Visualization , vol.4 , Issue.3 , pp. 191-205
    • Saraiya, P.1    North, C.2    Duca, K.3
  • 27
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software Environment for integrated models of biomolecular interaction networks
    • DOI 10.1101/gr.1239303
    • P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, N. Amin, B. Schwikowski, and T. Ideker. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Research, 13(11):2498-2504, 2003. (Pubitemid 37428274)
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 30
    • 84886516538 scopus 로고    scopus 로고
    • TIBCO Software
    • TIBCO Software. Spotfire, 2013.
    • (2013) Spotfire
  • 31
    • 70649083173 scopus 로고    scopus 로고
    • CGV-An interactive graph visualization system
    • Dec.
    • C. Tominski, J. Abello, and H. Schumann. CGV-An interactive graph visualization system. Computers & Graphics, 33(6):660-678, Dec. 2009.
    • (2009) Computers & Graphics , vol.33 , Issue.6 , pp. 660-678
    • Tominski, C.1    Abello, J.2    Schumann, H.3
  • 32
    • 84861807752 scopus 로고    scopus 로고
    • The relationship between rational drug design and drug side effects
    • May
    • J. Wang, Z.-x. Li, C.-x. Qiu, D. Wang, and Q.-h. Cui. The relationship between rational drug design and drug side effects. Briefings in Bioinformatics, 13(3):377-382, May 2012.
    • (2012) Briefings in Bioinformatics , vol.13 , Issue.3 , pp. 377-382
    • Wang, J.1    Li, Z.-X.2    Qiu, C.-X.3    Wang, D.4    Cui, Q.-H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.