메뉴 건너뛰기




Volumn , Issue , 2012, Pages 107-114

enRoute: Dynamic path extraction from biological pathway maps for in-depth experimental data analysis

Author keywords

biological processes; cellular networks; copy number variation; expression data; path extraction; Pathway analysis

Indexed keywords

BIOLOGICAL PROCESS; CELLULAR NETWORK; COPY NUMBER; EXPRESSION DATA; PATHWAY ANALYSIS;

EID: 84872237748     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BioVis.2012.6378600     Document Type: Conference Paper
Times cited : (16)

References (30)
  • 4
    • 0033551070 scopus 로고    scopus 로고
    • New insights into tumor suppression: PTEN suppresses tumor formation by restraining the phosphoinositide 3-Kinase/AKT pathway
    • L. C. Cantley and B. G. Neel. New insights into tumor suppression: PTEN suppresses tumor formation by restraining the phosphoinositide 3-Kinase/AKT pathway. Proceedings of the National Academy of Sciences, 96(8):4240-4245, 1999.
    • (1999) Proceedings of the National Academy of Sciences , vol.96 , Issue.8 , pp. 4240-4245
    • Cantley, L.C.1    Neel, B.G.2
  • 8
    • 67849122322 scopus 로고    scopus 로고
    • VisANT 3.5: Multi-scale network visualization, analysis and inference based on the gene ontology
    • Z. Hu, J. Hung, Y. Wang, Y. Chang, C. Huang, M. Huyck, and C. DeLisi. VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Research, 37(Web Server):W115-W121, 2009.
    • (2009) Nucleic Acids Research , vol.37 , Issue.WEB SERVER
    • Hu, Z.1    Hung, J.2    Wang, Y.3    Chang, Y.4    Huang, C.5    Huyck, M.6    DeLisi, C.7
  • 9
    • 33645241830 scopus 로고    scopus 로고
    • VANTED: A system for advanced data analysis and visualization in the context of biological networks
    • B. H. Junker, C. Klukas, and F. Schreiber. VANTED: a system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics, 7(1):109, 2006.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 109
    • Junker, B.H.1    Klukas, C.2    Schreiber, F.3
  • 11
    • 38549126643 scopus 로고    scopus 로고
    • KEGG for linking genomes to life and the environment
    • M. Kanehisa, M. Araki, S. Goto, M. Hattori, M. Hirakawa, and et al. KEGG for linking genomes to life and the environment. Nucleic Acids Research, 36(Database-Issue):480-484, 2008.
    • (2008) Nucleic Acids Research , vol.36 , Issue.DATABASE-ISSUE , pp. 480-484
    • Kanehisa, M.1    Araki, M.2    Goto, S.3    Hattori, M.4    Hirakawa, M.5
  • 12
    • 11244328060 scopus 로고    scopus 로고
    • The pathway tools software
    • P. D. Karp, S. Paley, and P. Romero. The pathway tools software. Bioinformatics, 18(Suppl 1):S225-S232, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Karp, P.D.1    Paley, S.2    Romero, P.3
  • 17
    • 3042859147 scopus 로고    scopus 로고
    • Visualizing metabolic pathways: Comparative genomics and expression analysis
    • H. Lindroos and S. G. E. Andersson. Visualizing metabolic pathways: comparative genomics and expression analysis. Proceedings of the IEEE, 90(11):1793-1802, 2002.
    • (2002) Proceedings of the IEEE , vol.90 , Issue.11 , pp. 1793-1802
    • Lindroos, H.1    Andersson, S.G.E.2
  • 18
    • 0022700207 scopus 로고
    • Automating the design of graphical presentations of relational information
    • J. Mackinlay. Automating the design of graphical presentations of relational information. ACM Transactions on Graphics, 5(2):110-141, 1986.
    • (1986) ACM Transactions on Graphics , vol.5 , Issue.2 , pp. 110-141
    • Mackinlay, J.1
  • 20
    • 23144431919 scopus 로고    scopus 로고
    • PathwayExplorer: Web service for visualizing high-throughput expression data on biological pathways
    • B. Mlecnik, M. Scheideler, H. Hackl, J. Hartler, F. Sanchez-Cabo, and Z. Trajanoski. PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. Nucleic Acids Research, 33(Web Server issue):633-637, 2005.
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB SERVER ISSUE , pp. 633-637
    • Mlecnik, B.1    Scheideler, M.2    Hackl, H.3    Hartler, J.4    Sanchez-Cabo, F.5    Trajanoski, Z.6
  • 21
    • 77952108366 scopus 로고    scopus 로고
    • Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
    • H. Noushmehr, D. J. Weisenberger, K. Diefes, H. S. Phillips, K. Pujara, and et al. Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell, 17(5):510-522, 2010.
    • (2010) Cancer Cell , vol.17 , Issue.5 , pp. 510-522
    • Noushmehr, H.1    Weisenberger, D.J.2    Diefes, K.3    Phillips, H.S.4    Pujara, K.5
  • 29
    • 73649123907 scopus 로고    scopus 로고
    • Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
    • R. G. Verhaak, K. A. Hoadley, E. Purdom, V. Wang, and et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell, 17(1):98-110, 2010.
    • (2010) Cancer Cell , vol.17 , Issue.1 , pp. 98-110
    • Verhaak, R.G.1    Hoadley, K.A.2    Purdom, E.3    Wang, V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.