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Volumn 53, Issue 5, 2013, Pages 847-856

Phylogenetic analysis of gene expression

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TRANSCRIPTOME;

EID: 84886395245     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/ict068     Document Type: Conference Paper
Times cited : (57)

References (28)
  • 1
    • 65249107239 scopus 로고    scopus 로고
    • Simultaneous Bayesian gene tree reconstruction and reconciliation analysis
    • Akerborg O, Sennblad B, Arvestad L, Lagergren J. 2009 Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc Natl Acad Sci USA 106:5714-9
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 5714-5719
    • Akerborg, O.1    Sennblad, B.2    Arvestad, L.3    Lagergren, J.4
  • 2
    • 70349414048 scopus 로고    scopus 로고
    • The gene evolution model and computing its associated probabilities
    • Arvestad L, Lagergren J, Sennblad B. 2009. The gene evolution model and computing its associated probabilities. J ACM 56:1-44
    • (2009) J ACM , vol.56 , pp. 1-44
    • Arvestad, L.1    Lagergren, J.2    Sennblad, B.3
  • 3
    • 77955504378 scopus 로고    scopus 로고
    • Statistical design and analysis of RNA sequencing data
    • Auer PL, Doerge RW. 2010. Statistical design and analysis of RNA sequencing data. Genetics 185:405-16
    • (2010) Genetics , vol.185 , pp. 405-416
    • Auer, P.L.1    Doerge, R.W.2
  • 4
    • 59049088893 scopus 로고    scopus 로고
    • Optimization of gene expression by natural selection
    • Bedford T, Hartl DL. 2009. Optimization of gene expression by natural selection. Proc Natl Acad Sci USA 106:1133-8
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 1133-1138
    • Bedford, T.1    Hartl, D.L.2
  • 5
    • 62349112885 scopus 로고    scopus 로고
    • Covariance regularization by thresholding
    • Bickel PJ, Levina E. 2008. Covariance regularization by thresholding. The Annals of Statistics 36:2577-604
    • (2008) Annals of Statistics , vol.36 , pp. 2577-2604
    • Bickel, P.J.1    Levina, E.2
  • 7
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein J. 1985. Phylogenies and the comparative method. Am Nat 125:1-15
    • (1985) Am Nat , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 8
    • 43949115169 scopus 로고    scopus 로고
    • Comparative methods with sampling error and within-species variation: Contrasts revisited and revised
    • Felsenstein J. 2008. Comparative methods with sampling error and within-species variation: Contrasts revisited and revised. Am Nat 171:713-25
    • (2008) Am Nat , vol.171 , pp. 713-725
    • Felsenstein, J.1
  • 10
    • 33746265259 scopus 로고    scopus 로고
    • Natural selection on gene expression
    • Gilad Y, Oshlack A, Rifkin SA. 2006. Natural selection on gene expression. Trends Genet 22:456-61
    • (2006) Trends Genet , vol.22 , pp. 456-461
    • Gilad, Y.1    Oshlack, A.2    Rifkin, S.A.3
  • 12
    • 77955883388 scopus 로고    scopus 로고
    • Biases in Illumina transcriptome sequencing caused by random hexamer priming
    • Hansen KD, Brenner SE, Dudoit S. 2010. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 38:e131
    • (2010) Nucleic Acids Res , vol.38
    • Hansen, K.D.1    Brenner, S.E.2    Dudoit, S.3
  • 13
    • 84858068675 scopus 로고    scopus 로고
    • Removing technical variability in RNA-seq data using conditional quantile normalization
    • Hansen KD, Irizarry RA, Wu Z. 2012. Removing technical variability in RNA-seq data using conditional quantile normalization. Biostatistics 13:204-16
    • (2012) Biostatistics , vol.13 , pp. 204-216
    • Hansen, K.D.1    Irizarry, R.A.2    Wu, Z.3
  • 15
    • 71849116163 scopus 로고    scopus 로고
    • Evolving gene expression: From G to E to G x E
    • Hodgins-Davis A, Townsend JP. 2009. Evolving gene expression: From G to E to G x E. Trends Ecol Evol 24:649-58
    • (2009) Trends Ecol Evol , vol.24 , pp. 649-658
    • Hodgins-Davis, A.1    Townsend, J.P.2
  • 16
    • 34447280382 scopus 로고    scopus 로고
    • Within-species variation and measurement error in phylogenetic comparative methods
    • Ives AR, Midford PE, Garland TJ. 2007. Within-species variation and measurement error in phylogenetic comparative methods. Syst Biol 56:252-70
    • (2007) Syst Biol , vol.56 , pp. 252-270
    • Ives, A.R.1    Midford, P.E.2    Garland, T.J.3
  • 17
    • 34848914038 scopus 로고    scopus 로고
    • Capturing heterogeneity in gene expression studies by surrogate variable analysis
    • Leek JT, Storey JD. 2007. Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genet 3:1724-35
    • (2007) PLoS Genet , vol.3 , pp. 1724-1735
    • Leek, J.T.1    Storey, J.D.2
  • 19
    • 79959828326 scopus 로고    scopus 로고
    • Testing the ortholog conjecture with comparative functional genomic data from mammals
    • Nehrt NL, Clark WT, Radivojac P, Hahn MW. 2011. Testing the ortholog conjecture with comparative functional genomic data from mammals. PLoS Comput Biol 7:e1002073
    • (2011) PLoS Comput Biol , vol.7
    • Nehrt, N.L.1    Clark, W.T.2    Radivojac, P.3    Hahn, M.W.4
  • 20
    • 78650481676 scopus 로고    scopus 로고
    • A Bayesian approach for fast and accurate gene tree reconstruction
    • Rasmussen MD, Kellis M. 2010. A Bayesian approach for fast and accurate gene tree reconstruction. Mol Biol Evol 28:273-90
    • (2010) Mol Biol Evol , vol.28 , pp. 273-290
    • Rasmussen, M.D.1    Kellis, M.2
  • 21
    • 0037313182 scopus 로고    scopus 로고
    • Evolution of gene expression in the Drosophila melanogaster subgroup
    • Rifkin SA, Kim J, White KP. 2003. Evolution of gene expression in the Drosophila melanogaster subgroup. Nat Genet 33:138-44
    • (2003) Nat Genet , vol.33 , pp. 138-144
    • Rifkin, S.A.1    Kim, J.2    White, K.P.3
  • 22
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson MD, Oshlack A. 2010. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 11:R25
    • (2010) Genome Biol , vol.11
    • Robinson, M.D.1    Oshlack, A.2
  • 23
    • 84863885448 scopus 로고    scopus 로고
    • Comparative studies of gene expression and the evolution of gene regulation
    • Romero IG, Ruvinsky I, Gilad Y. 2012. Comparative studies of gene expression and the evolution of gene regulation. Nat Rev Genet 13:505-16
    • (2012) Nat Rev Genet , vol.13 , pp. 505-516
    • Romero, I.G.1    Ruvinsky, I.2    Gilad, Y.3
  • 24
    • 70349413154 scopus 로고    scopus 로고
    • Probabilistic orthology analysis
    • Sennblad B, Lagergren J. 2009. Probabilistic orthology analysis. Syst Biol 58:411-24
    • (2009) Syst Biol , vol.58 , pp. 411-424
    • Sennblad, B.1    Lagergren, J.2
  • 27
    • 84871822882 scopus 로고    scopus 로고
    • TreeFix: Statistically informed gene tree error correction using species trees
    • Wu YC, Rasmussen MD, Bansal MS, Kellis M. 2012. TreeFix: Statistically informed gene tree error correction using species trees. Syst Biol 62:110-20
    • (2012) Syst Biol , vol.62 , pp. 110-120
    • Wu, Y.C.1    Rasmussen, M.D.2    Bansal, M.S.3    Kellis, M.4


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