Discovery of cellobionic acid phosphorylase in cellulolytic bacteria and fungi

FEBS Letters

Volumn 587, Issue 21, 2013, Pages 3556-3561

  Nihira, Takanori ^a   Saito, Yuka ^a   Nishimoto, Mamoru ^b   Kitaoka, Motomitsu ^b   Igarashi, Kiyohiko ^c   Ohtsubo, Ken'Ichi ^a   Nakai, Hiroyuki ^a  

^a NIIGATA UNIVERSITY   (Japan)

^b NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

Cellobionic acid phosphorylase; Glycoside hydrolase family 94; Neurospora crassa; Xanthomonas campestris

Indexed keywords

CELLOBIONIC ACID; CELLOBIONIC ACID PHOSPHORYLASE; CELLULOSE; GLUCONIC ACID; GLUCOSE 1 PHOSPHATE; PHOSPHORYLASE; RECOMBINANT ENZYME; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CONTROLLED STUDY; ENZYME PURIFICATION; ENZYME SYNTHESIS; GLYCOLYSIS; LYSIS; NEUROSPORA CRASSA; NONHUMAN; NUCLEOTIDE SEQUENCE; PENTOSE PHOSPHATE CYCLE; PHOSPHOROLYSIS; PRIORITY JOURNAL; XANTHOMONAS CAMPESTRIS;

Α-D-GLUCOSE 1-PHOSPHATE; ΑGLC1P; CELLOBIONIC ACID PHOSPHORYLASE; GH; GLYCOSIDE HYDROLASE FAMILY; GLYCOSIDE HYDROLASE FAMILY 94; NEUROSPORA CRASSA; PAGE; POLYACRYLAMIDE-GEL ELECTROPHORESIS; XANTHOMONAS CAMPESTRIS;

BACTERIAL PROTEINS; DISACCHARIDES; FUNGAL PROTEINS; GLUCONATES; GLUCOSE; KINETICS; NEUROSPORA CRASSA; PHOSPHORYLASES; SUBSTRATE SPECIFICITY; XANTHOMONAS CAMPESTRIS;

ASCOMYCOTA; BACTERIA (MICROORGANISMS); FUNGI; NEUROSPORA CRASSA; XANTHOMONAS CAMPESTRIS;

EID: 84886305908     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2013.09.014     Document Type: Article

References (29)

1. L.R. Lynd, P.J. Weimer, W.H. van Zyl, and I.S. Pretorius Microbial cellulose utilization: fundamentals and biotechnology Microbiol. Mol. Biol. Rev. 66 2002 506 577
2. P. Baldrian, and V. Valásková Degradation of cellulose by basidiomycetous fungi FEMS Microbiol. Rev. 32 2008 501 521
3. U. Westermark, and K.E. Eriksson Carbohydrate-dependent enzyme quinone reduction during lignin degradation Acta Chem. Scand. Ser. B 28 1974 204 208
4. G. Henriksson, G. Johansson, and G. Pettersson A critical review of cellobiose dehydrogenases J. Biotechnol. 78 2000 93 113
5. G. Vaaje-Kolstad, B. Westereng, S.J. Horn, Z. Liu, H. Zhai, M. Sørlie, and V.G. Eijsink An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides Science 330 2010 219 222
6. Z. Forsberg, G. Vaaje-Kolstad, B. Westereng, A.C. Bunæs, Y. Stenstrøm, A. MacKenzie, M. Sørlie, S.J. Horn, and V.G. Eijsink Cleavage of cellulose by a CBM33 protein Protein Sci. 20 2011 1479 1483
7. R.J. Quinlan, M.D. Sweeney, L. Lo Leggio, H. Otten, J.C. Poulsen, K.S. Johansen, K.B. Krogh, C.I. Jørgensen, M. Tovborg, A. Anthonsen, T. Tryfona, C.P. Walter, P. Dupree, F. Xu, G.J. Davies, and P.H. Walton Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components Proc. Natl. Acad. Sci. USA 108 2011 15079 15084
8. L. Žifčáková, and P. Baldrian Fungal polysaccharide monooxygenases: new players in the decomposition of cellulose Fungal Ecol. 5 2012 481 489
9. C.M. Phillips, W.T. Beeson, J.H. Cate, and M.A. Marletta Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa ACS Chem. Biol. 6 2011 1399 1406
10. S.J. Horn, G. Vaaje-Kolstad, B. Westereng, and V.G. Eijsink Novel enzymes for the degradation of cellulose Biotechnol. Biofuels 5 2012 45
11. D. Cannella, C.W. Hsieh, C. Felby, and H. Jørgensen Production and effect of aldonic acids during enzymatic hydrolysis of lignocellulose at high dry matter content Biotechnol. Biofuels 5 2012 26
12. M. Dale, H. Ensley, K. Kern, K. Sastry, and L. Byers Reversible inhibitors of β-glucosidase Biochemistry 24 1985 3530 3539
13. M. Kitaoka, and K. Hayashi Carbohydrate-processing phosphorolytic enzymes Trends Glycosci. Glycotechnol. 14 2002 35 50
14. C. Luley-Goedl, and B. Nidetzky Carbohydrate synthesis by disaccharide phosphorylases: reactions, catalytic mechanisms and application in the glycosciences Biotechnol. J. 5 2010 1324 1338
15. H. Nakai, M. Kitaoka, B. Svensson, and K. Ohtsubo Recent development of phosphorylases possessing large potential for oligosaccharide synthesis Curr. Opin. Chem. Biol. 17 2013 301 309
16. B.L. Cantarel, P.M. Coutinho, C. Rancurel, T. Bernard, V. Lombard, and B. Henrissat The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics Nucleic Acids Res. 37 2009 D233 238
17. C.N. Pace, F. Vajdos, L. Fee, G. Grimsley, and T. Gray How to measure and predict the molar absorption coefficient of a protein Protein Sci. 4 1995 2411 2423
18. G. Michal d-Glucose 1-phosphate H.U. Bergmeyer, J. Bergmeyer, M. Grassl, Method of Enzymatic Analysis 3rd ed. 1984 Verlag Chemie Weinheim 185 191 Vol. 6
19. T. Nihira, Y. Saito, M. Kitaoka, K. Otsubo, and H. Nakai Characterization of a laminaribiose phosphorylase from Acholeplasma laidlawii PG-8A and production of 1,3-β-d-glucosyl disaccharides Carbohydr. Res. 361 2012 49 54
20. O.H. Lowry, and J.A. Lopez The determination of inorganic phosphate in the presence of labile phosphate esters J. Biol. Chem. 162 1946 421 428
21. T. Nihira, H. Nakai, K. Chiku, and M. Kitaoka Discovery of nigerose phosphorylase from Clostridium phytofermentans Appl. Microbiol. Biotechnol. 93 2012 1513 1522
22. A. Liu, H. Tomita, H. Li, H. Miyaki, C. Aoyagi, S. Kaneko, and K. Hayashi Cloning, sequencing and expression of cellobiose phosphorylase gene from Cellvibrio gilvus J. Ferment. Bioeng. 85 1998 511 513
23. T. Sawano, W. Saburi, K. Hamura, H. Matsui, and H. Mori Characterization of Ruminococcus albus cellodextrin phosphorylase and identification of a key phenylalanine residue for acceptor specificity and affinity to the phosphate group FEBS J. 2013 10.1111/febs.12408
24. Y. Honda, M. Kitaoka, and K. Hayashi Reaction mechanism of chitobiose phosphorylase from Vibrio proteolyticus: identification of family 36 glycosyltransferase in Vibrio Biochem. J. 377 2004 225 232
25. H. Nielsen, J. Engelbrecht, S. Brunak, and G. von Heijne Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites Protein Eng. 10 1997 1 6
26. S.T. Moe, A.K. Holen, and T. Schult 4-O-β-d-Glucopyranosyl-d- gluconic acid (cellobionic acid) produced by ozonation of cellobiose: isolation by HPLC and assignment on NMR shifts J. Carbohydr. Chem. 21 2002 513 520
27. R. Nouaille, M. Matulova, V. Pätoprstý, A.M. Delort, and E. Forano Production of oligosaccharides and cellobionic acid by Fibrobacter succinogenes S85 growing on sugars, cellulose and wheat straw Appl. Microbiol. Biotechnol. 83 2009 425 433
28. S.M. Southall, J.J. Doel, D.J. Richardson, and A. Oubrie Soluble aldose sugar dehydrogenase from Escherichia coli: a highly exposed active site conferring broad substrate specificity J. Biol. Chem. 281 2006 30650 30659
29. P.H. Williams Black rot: a continuing threat to world crucifers Plant Dis. 64 1980 736 742