Soluble aldose sugar dehydrogenase from Escherichia coli: A highly exposed active site conferring broad substrate specificity

Journal of Biological Chemistry

Volumn 281, Issue 41, 2006, Pages 30650-30659

  Southall, Stacey M ^a   Doel, Justin J ^a   Richardson, David J ^a   Oubrie, Arthur ^a,b  

^a UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^b NV ORGANON   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ALDOSE SUGAR DEHYDROGENASE; GLUCONIC ACID; TRISACCHARIDES;

CATALYSIS; ESCHERICHIA COLI; POLYSACCHARIDES; SUBSTRATES; SUGARS;

ENZYMES;

BACTERIAL ENZYME; CARBOHYDRATE DERIVATIVE; FRUCTOSE BISPHOSPHATE ALDOLASE; GLUCOSE DEHYDROGENASE; OXIDOREDUCTASE;

ACINETOBACTER CALCOACETICUS; ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME STRUCTURE; ESCHERICHIA COLI; GENE EXPRESSION; NONHUMAN; PRIORITY JOURNAL; PROTEIN PURIFICATION; X RAY DIFFRACTION;

ACINETOBACTER CALCOACETICUS; BINDING SITES; CALCIUM; CARBOHYDRATE DEHYDROGENASES; ESCHERICHIA COLI; GLUCONATES; GLUCOSE; GLUCOSE 1-DEHYDROGENASE; HYDROGEN-ION CONCENTRATION; HYDROLYSIS; MODELS, MOLECULAR; PQQ COFACTOR; PROTEIN STRUCTURE, SECONDARY; SUBSTRATE SPECIFICITY;

ACINETOBACTER CALCOACETICUS; ESCHERICHIA COLI;

EID: 33750075455     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M601783200     Document Type: Article

References (43)

1. Oubrie, A. (2003) Biochim. Biophys. Acta 1647, 143-151
2. Kasahara, T., and Kato, T. (2005) Nature 433, E11-E12
3. Kasahara, T., and Kato, T. (2003) Nature 422, 832
4. Felton, L. M., and Anthony, C. (2005) Nature 433, E10-E12
5. Rucker, R., Storms, D., Sheets, A., Tchaparian, E., and Fascetti, A. (2005) Nature 433, E10-E12
6. Olsthoorn, A. J. J., and Duine, J. A. (1996) Arch. Biochem. Biophys. 336, 42-48
7. Olsthoorn, A. J. J., Otsuki, T., and Duine, J. A. (1997) Eur. J. Biochem. 247, 659-665
8. Oubrie, A., Rozeboom, H. J., Kalk, K. H., Olsthoorn, A. J. J., Duine, J. A., and Dijkstra, B. W. (1999) EMBO J. 18, 5187-5194
9. Olsthoorn, A. J. J., and Duine, J. A. (1998) Eur. J. Biochem. 255, 255-261
10. Olsthoorn, A. J. J., and Duine, J. A. (1998) Biochemistry 37, 13854-13861
11. Igarashi, S., Hirokawa, T., and Sode, K. (2004) Biomol. Eng. 21, 81-89
12. Oubrie, A., Rozeboom, H. J., Kalk, K. H., Duine, J. A., and Dijkstra, B. W. (1999) J. Mol. Biol. 289, 319-333
13. Oubrie, A., Rozeboom, H. J., and Dijkstra, B. W. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 11787-11791
14. Hoenes, J., and Unkrig, V. (1996) U. S. Patent 5,484,708
15. Tang, Z., Louie, R. F., Lee, J. H., Lee, D. M., Miller, E. E., and Kost, G. J. (2001) Crit. Care Med. 29, 1062-1070
16. Solnica, B., Naskalski, J. W., and Sieradzki, J. (2003) Clin. Chim. Acta 331, 29-35
17. Pazur, J. H., and Kleppe, K. (1964) Biochemistry 35, 578-583
18. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Press, Cold Spring Harbor, NY
19. Page, R. D. (1996) Comput. Appl. Biosci. 12, 357-358
20. Leslie, A. G. W. (1992) Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography 26
21. Collaborative Computational Project 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
22. Brunger, A. T. (1997) Macromol. Crystallogr. 277, 366-396
23. Perrakis, A., Harkiolaki, M., Wilson, K. S., and Lamzin, V. S. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1445-1450
24. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. Sect. D Biol. Crystallogr. 60, 2126-2132
25. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
26. Lamzin, V. S., and Wilson, K. S. (1997) Methods Enzymol. 277, 269-305
27. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
28. Dokter, P., Frank Jzn, J., and Duine, J. A. (1986) Biochem. J. 239, 163-167
29. Ramachandran, G. N., and Sasisekharan, V. (1968) Adv. Protein Chem. 23, 283-438
30. Haltia, T., Brown, K., Tegoni, M., Cambillau, C., Saraste, M., Mattila, K., and Djinovic-Carugo, K. (2003) Biochem. J. 369, 77-88
31. Satoh, A., Kim, J. K., Miyahara, I., Devreese, B., Vandenberghe, I., Hacisalihoglu, A., Okajima, T., Kuroda, S., Adachi, O., Duine, J. A., Van Beeumen, J., Tanizawa, K., and Hirotsu, K. (2002) J. Biol. Chem. 277, 2830-2834
32. Altschul, S. F., Madden, T. L., Schiffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
33. Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G., and Thompson, J. D. (2003) Nucleic Acids Res. 31, 3497-3500
34. Miyazaki, T., Sugisawa, T., and Hoshino, T. (2006) Appl. Environ. Microbiol. 72, 1487-1495
35. Sugisawa, T., Miyazaki, T., and Hoshino, T. (2005) Biosci. Biotechnol. Biochem. 69, 659-662
36. Dewanti, A. R., and Duine, J. A. (1998) Biochemistry 37, 6810-6818
37. Jormakka, M., Richardson, D., Byrne, B., and Iwata, S. (2004) Structure 12, 95-104
38. Bertero, M. G., Rothery, R. A., Palak, M., Hou, C., Lim, D., Blasco, F., Weiner, J. H., and Strynadka, N. C. (2003) Nat. Struct. Biol. 10, 681-687
39. Bamford, V. A., Angove, H. C., Seward, H. E., Thomson, A. J., Cole, J. A., Butt, J. N., Hemmings, A. M., and Richardson, D. J. (2002) Biochemistry 41, 2921-2931
40. Jormakka, M., Tornroth, S., Byrne, B., and Iwata, S. (2002) Science 295, 1863-1868
41. Iverson, T. M., Luna-Chavez, C., Cecchini, G., and Rees, D. C. (1999) Science 284, 1961-1966
42. Yankovskaya, V., Horsefield, R., Tornroth, S., Luna-Chavez, C., Miyoshi, H., Leger, C., Byrne, B., Cecchini, G., and Iwata, S. (2003) Science 299, 700-704
43. Abramson, J., Riistama, S., Larsson, G., Jasaitis, A., Svensson-Ek, M., Laakkonen, L., Puustinen, A., Iwata, S., and Wikstrom, M. (2000) Nat. Struct. Biol. 7, 910-917