메뉴 건너뛰기




Volumn 102, Issue 4, 2013, Pages 278-287

Genome-wide association study in breast cancer survivors reveals SNPs associated with gene expression of genes belonging to MHC class I and II

Author keywords

Breast cancer; Breast cancer survivors; EQTL; Gene expression; Radiotherapy; SNP; Treatment

Indexed keywords

HLA C ANTIGEN; HLA DPB1 ANTIGEN; HLA DQA1 ANTIGEN; HLA DQB1 ANTIGEN; HLA DRB3 ANTIGEN; HLA DRB4 ANTIGEN; HLA E ANTIGEN; HLA F ANTIGEN; HLA G ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MESSENGER RNA;

EID: 84886245759     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.07.006     Document Type: Article
Times cited : (11)

References (33)
  • 1
    • 84886273933 scopus 로고    scopus 로고
    • Cancer Registry of Norway. Cancer in Norway 2008 - Cancer incidence, mortality, survival and prevalence in Norway.
    • Cancer Registry of Norway. Cancer in Norway 2008 - Cancer incidence, mortality, survival and prevalence in Norway. 2009.
    • (2009)
  • 2
    • 33747826874 scopus 로고    scopus 로고
    • Preventing or reducing late side effects of radiation therapy: radiobiology meets molecular pathology
    • Bentzen S.M. Preventing or reducing late side effects of radiation therapy: radiobiology meets molecular pathology. Nat. Rev. Cancer 2006, 6:702-713.
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 702-713
    • Bentzen, S.M.1
  • 3
    • 0031897531 scopus 로고    scopus 로고
    • Off-treatment fatigue in breast cancer survivors: a controlled comparison
    • Andrykowski M.A., Curran S.L., Lightner R. Off-treatment fatigue in breast cancer survivors: a controlled comparison. J. Behav. Med. 1998, 21:1-18.
    • (1998) J. Behav. Med. , vol.21 , pp. 1-18
    • Andrykowski, M.A.1    Curran, S.L.2    Lightner, R.3
  • 4
    • 0031803502 scopus 로고    scopus 로고
    • Characteristics and correlates of fatigue after adjuvant chemotherapy for breast cancer
    • Broeckel J.A., Jacobsen P.B., Horton J., Balducci L., Lyman G.H. Characteristics and correlates of fatigue after adjuvant chemotherapy for breast cancer. J. Clin. Oncol. 1998, 16:1689-1696.
    • (1998) J. Clin. Oncol. , vol.16 , pp. 1689-1696
    • Broeckel, J.A.1    Jacobsen, P.B.2    Horton, J.3    Balducci, L.4    Lyman, G.H.5
  • 5
    • 4444335882 scopus 로고    scopus 로고
    • Burden of illness in cancer survivors: findings from a population-based national sample
    • Yabroff K.R., Lawrence W.F., Clauser S., Davis W.W., Brown M.L. Burden of illness in cancer survivors: findings from a population-based national sample. J. Natl. Cancer Inst. 2004, 96:1322-1330.
    • (2004) J. Natl. Cancer Inst. , vol.96 , pp. 1322-1330
    • Yabroff, K.R.1    Lawrence, W.F.2    Clauser, S.3    Davis, W.W.4    Brown, M.L.5
  • 8
    • 78649323833 scopus 로고    scopus 로고
    • Fatigue and gene expression in human leukocytes: increased NF-kappaB and decreased glucocorticoid signaling in breast cancer survivors with persistent fatigue
    • Bower J.E., Ganz P.A., Irwin M.R., Arevalo J.M., Cole S.W. Fatigue and gene expression in human leukocytes: increased NF-kappaB and decreased glucocorticoid signaling in breast cancer survivors with persistent fatigue. Brain Behav. Immun. 2011, 25:147-150.
    • (2011) Brain Behav. Immun. , vol.25 , pp. 147-150
    • Bower, J.E.1    Ganz, P.A.2    Irwin, M.R.3    Arevalo, J.M.4    Cole, S.W.5
  • 10
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt E.E., Monks S.A., Drake T.A., Lusis A.J., Che N., Colinayo V., et al. Genetics of gene expression surveyed in maize, mouse and man. Nature 2003, 20(422):297-302.
    • (2003) Nature , vol.20 , Issue.422 , pp. 297-302
    • Schadt, E.E.1    Monks, S.A.2    Drake, T.A.3    Lusis, A.J.4    Che, N.5    Colinayo, V.6
  • 12
    • 27644482314 scopus 로고    scopus 로고
    • Mapping determinants of human gene expression by regional and genome-wide association
    • Cheung V.G., Spielman R.S., Ewens K.G., Weber T.M., Morley M., Burdick J.T. Mapping determinants of human gene expression by regional and genome-wide association. Nature 2005, 437:1365-1369.
    • (2005) Nature , vol.437 , pp. 1365-1369
    • Cheung, V.G.1    Spielman, R.S.2    Ewens, K.G.3    Weber, T.M.4    Morley, M.5    Burdick, J.T.6
  • 13
    • 33947386671 scopus 로고    scopus 로고
    • The late radiotherapy normal tissue injury phenotypes of telangiectasia, fibrosis and atrophy in breast cancer patients have distinct genotype-dependent causes
    • Giotopoulos G., Symonds R.P., Foweraker K., Griffin M., Peat I., Osman A., et al. The late radiotherapy normal tissue injury phenotypes of telangiectasia, fibrosis and atrophy in breast cancer patients have distinct genotype-dependent causes. Br. J. Cancer 2007, 96:1001-1007.
    • (2007) Br. J. Cancer , vol.96 , pp. 1001-1007
    • Giotopoulos, G.1    Symonds, R.P.2    Foweraker, K.3    Griffin, M.4    Peat, I.5    Osman, A.6
  • 14
    • 0344676392 scopus 로고    scopus 로고
    • Prediction of normal tissue radiosensitivity from polymorphisms in candidate genes
    • Andreassen C.N., Alsner J., Overgaard M., Overgaard J. Prediction of normal tissue radiosensitivity from polymorphisms in candidate genes. Radiother. Oncol. 2003, 69:127-135.
    • (2003) Radiother. Oncol. , vol.69 , pp. 127-135
    • Andreassen, C.N.1    Alsner, J.2    Overgaard, M.3    Overgaard, J.4
  • 15
  • 16
    • 77957872526 scopus 로고    scopus 로고
    • No association between SNPs regulating TGF-beta1 secretion and late radiotherapy toxicity to the breast: results from the RAPPER study
    • Barnett G.C., Coles C.E., Burnet N.G., Pharoah P.D., Wilkinson J., West C.M., et al. No association between SNPs regulating TGF-beta1 secretion and late radiotherapy toxicity to the breast: results from the RAPPER study. Radiother. Oncol. 2010, 97:9-14.
    • (2010) Radiother. Oncol. , vol.97 , pp. 9-14
    • Barnett, G.C.1    Coles, C.E.2    Burnet, N.G.3    Pharoah, P.D.4    Wilkinson, J.5    West, C.M.6
  • 17
    • 0037315078 scopus 로고    scopus 로고
    • Association of transforming growth factor beta-1 single nucleotide polymorphisms with radiation-induced damage to normal tissues in breast cancer patients
    • Quarmby S., Fakhoury H., Levine E., Barber J., Wylie J., Hajeer A.H., et al. Association of transforming growth factor beta-1 single nucleotide polymorphisms with radiation-induced damage to normal tissues in breast cancer patients. Int. J. Radiat. Biol. 2003, 79:137-143.
    • (2003) Int. J. Radiat. Biol. , vol.79 , pp. 137-143
    • Quarmby, S.1    Fakhoury, H.2    Levine, E.3    Barber, J.4    Wylie, J.5    Hajeer, A.H.6
  • 18
    • 33748577313 scopus 로고    scopus 로고
    • Risk of radiation-induced subcutaneous fibrosis in relation to single nucleotide polymorphisms in TGFB1, SOD2, XRCC1, XRCC3, APEX and ATM-a study based on DNA from formalin fixed paraffin embedded tissue samples
    • Andreassen C.N., Alsner J., Overgaard M., Sorensen F.B., Overgaard J. Risk of radiation-induced subcutaneous fibrosis in relation to single nucleotide polymorphisms in TGFB1, SOD2, XRCC1, XRCC3, APEX and ATM-a study based on DNA from formalin fixed paraffin embedded tissue samples. Int. J. Radiat. Biol. 2006, 82:577-586.
    • (2006) Int. J. Radiat. Biol. , vol.82 , pp. 577-586
    • Andreassen, C.N.1    Alsner, J.2    Overgaard, M.3    Sorensen, F.B.4    Overgaard, J.5
  • 19
    • 77951439152 scopus 로고    scopus 로고
    • Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS
    • Nicolae D.L., Gamazon E., Zhang W., Duan S., Dolan M.E., Cox N.J. Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS. PLoS Genet. 2010, 6:e1000888.
    • (2010) PLoS Genet. , vol.6
    • Nicolae, D.L.1    Gamazon, E.2    Zhang, W.3    Duan, S.4    Dolan, M.E.5    Cox, N.J.6
  • 20
    • 0036071176 scopus 로고    scopus 로고
    • Fatigue and proinflammatory cytokine activity in breast cancer survivors
    • Bower J.E., Ganz P.A., Aziz N., Fahey J.L. Fatigue and proinflammatory cytokine activity in breast cancer survivors. Psychosom. Med. 2002, 64:604-611.
    • (2002) Psychosom. Med. , vol.64 , pp. 604-611
    • Bower, J.E.1    Ganz, P.A.2    Aziz, N.3    Fahey, J.L.4
  • 21
    • 34548029379 scopus 로고    scopus 로고
    • Cancer-related fatigue: links with inflammation in cancer patients and survivors
    • Bower J.E. Cancer-related fatigue: links with inflammation in cancer patients and survivors. Brain Behav. Immun. 2007, 21:863-871.
    • (2007) Brain Behav. Immun. , vol.21 , pp. 863-871
    • Bower, J.E.1
  • 22
    • 78651453837 scopus 로고    scopus 로고
    • Network analysis of skin tumor progression identifies a rewired genetic architecture affecting inflammation and tumor susceptibility
    • Quigley D.A., To M.D., Kim I.J., Lin K.K., Albertson D.G., Sjolund J., et al. Network analysis of skin tumor progression identifies a rewired genetic architecture affecting inflammation and tumor susceptibility. Genome Biol. 2011, 12:R5.
    • (2011) Genome Biol. , vol.12
    • Quigley, D.A.1    To, M.D.2    Kim, I.J.3    Lin, K.K.4    Albertson, D.G.5    Sjolund, J.6
  • 25
    • 77649340368 scopus 로고    scopus 로고
    • Regulation of major histocompatibility complex class II gene expression, genetic variation and disease
    • Handunnetthi L., Ramagopalan S.V., Ebers G.C., Knight J.C. Regulation of major histocompatibility complex class II gene expression, genetic variation and disease. Genes Immun. 2010, 11:99-112.
    • (2010) Genes Immun. , vol.11 , pp. 99-112
    • Handunnetthi, L.1    Ramagopalan, S.V.2    Ebers, G.C.3    Knight, J.C.4
  • 27
    • 79952173247 scopus 로고    scopus 로고
    • HLA-DQA1*02:01 is a major risk factor for lapatinib-induced hepatotoxicity in women with advanced breast cancer
    • Spraggs C.F., Budde L.R., Briley L.P., Bing N., Cox C.J., King K.S., et al. HLA-DQA1*02:01 is a major risk factor for lapatinib-induced hepatotoxicity in women with advanced breast cancer. J. Clin. Oncol. 2011, 20(29):667-673.
    • (2011) J. Clin. Oncol. , vol.20 , Issue.29 , pp. 667-673
    • Spraggs, C.F.1    Budde, L.R.2    Briley, L.P.3    Bing, N.4    Cox, C.J.5    King, K.S.6
  • 28
    • 35748981184 scopus 로고    scopus 로고
    • Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants
    • Burton P.R., Clayton D.G., Cardon L.R., Craddock N., Deloukas P., Duncanson A., et al. Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nat. Genet. 2007, 39:1329-1337.
    • (2007) Nat. Genet. , vol.39 , pp. 1329-1337
    • Burton, P.R.1    Clayton, D.G.2    Cardon, L.R.3    Craddock, N.4    Deloukas, P.5    Duncanson, A.6
  • 29
    • 3442895641 scopus 로고    scopus 로고
    • 17beta-Estradiol inhibits class II major histocompatibility complex (MHC) expression: influence on histone modifications and cbp recruitment to the class II MHC promoter
    • Adamski J., Ma Z., Nozell S., Benveniste E.N. 17beta-Estradiol inhibits class II major histocompatibility complex (MHC) expression: influence on histone modifications and cbp recruitment to the class II MHC promoter. Mol. Endocrinol. 2004, 18:1963-1974.
    • (2004) Mol. Endocrinol. , vol.18 , pp. 1963-1974
    • Adamski, J.1    Ma, Z.2    Nozell, S.3    Benveniste, E.N.4
  • 30
    • 33646576181 scopus 로고    scopus 로고
    • Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy
    • Dumeaux V., Johansen J., Borresen-Dale A.L., Lund E. Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy. Mol. Cancer Ther. 2006, 5:868-876.
    • (2006) Mol. Cancer Ther. , vol.5 , pp. 868-876
    • Dumeaux, V.1    Johansen, J.2    Borresen-Dale, A.L.3    Lund, E.4
  • 31
    • 22944444171 scopus 로고    scopus 로고
    • Testing differential gene expression in functional groups. Goeman's global test versus an ANCOVA approach
    • Mansmann U., Meister R. Testing differential gene expression in functional groups. Goeman's global test versus an ANCOVA approach. Methods Inf. Med. 2005, 44:449-453.
    • (2005) Methods Inf. Med. , vol.44 , pp. 449-453
    • Mansmann, U.1    Meister, R.2
  • 33
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Ser. B 1995, 57:289-300.
    • (1995) J. R. Stat. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.