A new mathematical model for the heat shock response

Natural Computing Series

Volumn , Issue 9783540888680, 2009, Pages 411-425

  Petre, Ion ^a   Mizera, Andrzej ^a   Hyder, Claire L ^a,b   Mikhailov, Andrey ^a,b   Eriksson, John E ^a,b   Sistonen, Lea ^a,b   Back, Ralph Johan ^a  

^a ÅBO AKADEMI UNIVERSITY   (Finland)

^b TURKU CENTRE FOR BIOTECHNOLOGY   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84886063590     PISSN: 16197127     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-540-88869-7_21     Document Type: Article

References (29)

1. Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2004) Essential cell biology, 2nd edn. Garland Science, London
2. Burden RL, Douglas Faires J (1996) Numerical analysis. Thomson Brooks/Cole, Pacific Grove
3. Ciocca DR, Calderwood SK (2005) Heat shock proteins in cancer: diagnostic, prognostic, predictive, and treatment implications. Cell Stress Chaperones 10(2):86-103
4. El-Samad H, Kurata H, Doyle J, Gross CA, Khamash M (2005) Surviving heat shock: control strategies for robustness and performance. Proc Natl Acad Sci 102(8):2736-2741
5. El-Samad H, Prajna S, Papachristodoulu A, Khamash M, Doyle J (2003) Model validation and robust stability analysis of the bacterial heat shock response using sostools. In: Proceedings of the 42nd IEEE conference on decision and control, pp 3766-3741
6. Guldberg CM, Waage P (1864) Studies concerning affinity. In: Forhandlinger CM (ed) Videnskabs-Selskabet i Christiana, p. 35
7. Guldberg CM, Waage P (1879) Concerning chemical affinity. Erdmann’s J Pract Chem 127:69-114
8. Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U (2006) Copasi—a complex pathway simulator. Bioinformatics 22(24):3067-3074
9. Kampinga HK (1993) Thermotolerance in mammalian cells: protein denaturation and aggregation, and stress proteins. J Cell Sci 104:11-17
10. Kline MP, Morimoto RI (1997) Repression of the heat shock factor 1 transcriptional activation domain is modulated by constitutive phosphorylation. Mol Cell Biol 17(4):2107-2115
11. Klipp E, Herwig R, Kowald A, Wierling C, Lehrach H (2006) Systems biology in practice. Wiley-VCH, New York
12. Kurata H, El-Samad H, Yi TM, Khamash M, Doyle J (2001) Feedback regulation of the heat shock response in e.coli. In: Proceedings of the 40th IEEE conference on decision and control, pp 837-842
13. Lepock JR, Frey HE, Ritchie KP (1993) Protein denaturation in intact hepatocytes and isolated cellular organelles during heat shock. J Cell Biol 122(6):1267-1276
14. Lepock JR, Frey HE, Rodahl AM, Kruuv J (1988) Thermal analysis of chl v79 cells using differential scanning calorimetry: Implications for hyperthermic cell killing and the heat shock response. J Cell Physiol 137(1):14-24
15. Liu B, DeFilippo AM, Li Z (2002) Overcomming immune tolerance to cancer by heat shock protein vaccines. Mol Cancer Ther 1:1147-1151
16. Lukacs KV, Pardo OE, Colston MJ, Geddes DM, Alton EWFW (2000) Heat shock proteins in cancer therapy. In: Habib (ed) Cancer gene therapy: past achievements and future challenges. Kluwer, Dordrecht, pp 363-368
17. Nelson DL, Cox MM (2000) Principles of biochemistry, 3rd edn. Worth Publishers, New York
18. Peper A, Grimbergent CA, Spaan JAE, Souren JEM, van Wijk R (1997) A mathematical model of the hsp70 regulation in the cell. Int J Hyperthermia 14:97-124
19. Petre I, Hyder CL, Mizera A, Mikhailov A, Eriksson JE, Sistonen L, Back R-J (2008) Two metabolites are enough to drive the eukaryotic heat shock response. Manuscript
20. Pockley AG (2003) Heat shock proteins as regulators of the immune response. Lancet 362(9382):469-476
21. Press WH, Teukolsky SA, Vetterling WT, Flammery BP (2007) Numerical recipes: the art of scientific computing. Cambridge University Press, Cambridge MATH
22. Rieger TR, Morimoto RI, Hatzimanikatis V (2005) Mathematical modeling of the eukaryotic heat shock response: dynamics of the hsp70 promoter. Biophys J 88(3):1646-1658
23. 32-targeted antisense. Biotechnol Bioeng 75(1):120-129
24. Taubes CH (2001) Modeling differential equations in biology. Cambridge University Press, Cambridge
25. Tomlin CJ, Axelrod JD (2005) Understanding biology by reverse engineering the control. Proc Natl Acad Sci 102(12):4219-4220
26. Turányi T (1990) Sensitivity analysis of complex kinetic systems. Tools and applications. J Math Chem 5:203-248
27. Workman P, de Billy E (2007) Putting the heat on cancer. Nat Med 13(12):1415-1417
28. Zill DG (2001) A first course in differential equations. Thomson, Tompa
29. Zill DG (2005) A first course in differential equations with modeling applications. Thomson, Tompa