Effects of the number of genome segments on primary and systemic infections with a multipartite plant RNA virus

Journal of Virology

Volumn 87, Issue 19, 2013, Pages 10805-10815

  Sánchez Navarro, Jesús A ^a   Zwart, Mark P ^a   Elenaa, Santiago F ^b  

^a CSIC   (Spain)

^b SANTA FE INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ALFALFA MOSAIC VIRUS; ARTICLE; CONCENTRATION RESPONSE; CONTROLLED STUDY; GENE EXPRESSION; GENE STRUCTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIMARY INFECTION; PRIORITY JOURNAL; SYTEMIC VIRUS INFECTION; TOBACCO; TRANSGENIC PLANT; VIRUS CELL INTERACTION; VIRUS GENOME; VIRUS INFECTION; VIRUS INFECTIVITY; VIRUS PARTICLE; WILD TYPE;

ALFALFA MOSAIC VIRUS; ALFAMOVIRUS; NICOTIANA TABACUM; RNA VIRUSES;

EID: 84885997702     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01402-13     Document Type: Article

References (40)

1. Nelson MI, Viboud C, Simonsen L, Bennett RT, Griesemer SB, George KS, Taylor J, Spiro DJ, Sengamalay NA, Ghedin E, Taubenberger JK, Holmes EC. 2008. Multiple reassortment events in the evolutionary history of H1N1 Influenza A virus since 1918. PLoS Pathog. 4:e1000012. doi:101371/journal.ppat.1000012.
2. Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC. 2008. The genomic and epidemiological dynamics of human Influenza A virus. Nature 453:615-619.
3. Jaspars EM. 1974. Plant viruses with a multipartite genome. Adv. Virus Res. 19:37-149.
4. Gronenborn B. 2004. Nanoviruses: genome organisation and protein function. Vet. Microbiol. 98:103-109.
5. Fulton RW. 1962. Effect of dilution on Necrotic ringspot virus infectivity and enhancement of infectivity by noninfective virus. Virology 18:477-485.
6. Bald JG. 1937. The use of numbers of infections for comparing the concentration of plant virus suspensions. I. Dilution experiments with purified suspensions. Ann. Appl. Biol. 24:33-55.
7. Zwart MP, Daròs JA, Elena SF. 2011. One is enough: in vivo effective population size is dose-dependent for a plant RNA virus. PLoS Pathog. 7:e1002122. doi:10.1371/journal.ppat.1002122.
8. Zwart MP, Hemerik L, Cory JS, de Visser JAGM, Bianchi FJJA, van Oers MM, Vlak JM, Hoekstra RF, van der Werf W. 2009. An experimental test of the independent action hypothesis in virus-insect pathosystems. Proc. Biol. Sci. 276:2233-2242.
9. Furumoto WA, Mickey R. 1967. A mathematical model for infectivitydilution curve of Tobacco mosaic virus-experimental tests. Virology 32: 224-233.
10. Lafforgue G, Tromas N, Elena SF, Zwart MP. 2012. Dynamics of the establishment of systemic potyvirus infection: independent yet cumulative action of primary infection sites. J. Virol. 86:12912-12922.
11. Zwart MP, Daròs JA, Elena SF. 2012. Effects of potyvirus effective population size in inoculated leaves on viral accumulation and the onset of symptoms. J. Virol. 86:9737-9747.
12. Price WC, Spencer EL. 1943. Accuracy of the local lesion method for measuring virus activity. II. Tobacco necrosis, Alfalfa mosaic, and Tobacco ringspot viruses. Am. J. Bot. 30:340-346.
13. Bald JG. 1950. Measurement of concentration of plant virus suspensions, p 17-29. In Delbrück M (ed), Viruses 1950. California Institute of Technology, Pasadena, CA.
14. Lauffer MA, Price WC. 1945. Infection by viruses. Arch. Biochem. 8:449-468.
15. Taschner PEM, Vanderkuyl AC, Neeleman L, Bol JF. 1991. Replication of an incomplete Alfalfa mosaic virus genome in plants transformed with viral replicase genes. Virology 181:445-450.
16. Sánchez-Navarro JA, Bol JF. 2001. Role of the Alfalfa mosaic virus movement protein and coat protein in virus transport. Mol. Plant Microbe Interact. 14:1051-1062.
17. Tenllado F, Bol JF. 2000. Genetic dissection of the multiple functions of Alfalfa mosaic virus coat protein in viral RNA replication, encapsidation, and movement. Virology 268:29-40.
18. van der Vossen EA, Neeleman L, Bol JF. 1994. Early and late functions of Alfalfa mosaic virus coat protein can be mutated separately. Virology 202:891-903.
19. Van Vloten-Doting L, Jaspars EM. 1972. The uncoating of Alfalfa mosaic virus by its own RNA. Virology 48:699-708.
20. Regoes RR, Hottinger JW, Sygnarski L, Ebert D. 2003. The infection rate of Daphnia magna by Pasteuria ramosa conforms with the mass-action principle. Epidemiol. Infect. 131:957-966.
21. Van der Werf W, Hemerik L, Vlak JM, Zwart MP. 2011. Heterogeneous host susceptibility enhances prevalence of mixed-genotype micro-parasite infections. PLoS Comput. Biol. 7:e1002097. doi:10.1371/journal.pcbi .1002097.
22. Fajardo TV, Peiró A, Pallás V, Sánchez-Navarro J. 2013. Systemic transport of Alfalfa mosaic virus can be mediated by the movement proteins of several viruses assigned to five genera of the 30K family. J. Gen. Virol. 94:677-681.
23. Sánchez-Navarro JA, Cañizares MC, Cano EA, Pallás V. 1999. Simultaneous detection of five carnation viruses by non-isotopic molecular hybridization. J. Virol. Methods 82:167-175.
24. Pallás V, Mas P, Sánchez-Navarro JA. 1998. Detection of plant RNA viruses by nonisotopic dot-blot hybridization. Methods Mol. Biol. 81: 461-468.
25. Sánchez-Navarro J, Miglino R, Ragozzino A, Bol JF. 2001. Engineering of Alfalfa mosaic virus RNA3 into an expression vector. Arch. Virol. 146: 923-939.
26. Neeleman L, Bol JF. 1999. Cis-acting functions of Alfalfa mosaic virus proteins involved in replication and encapsidation of viral RNA. Virology 254:324-333.
27. Schneider CA, Rasband WS, Eliceiri KW. 2012. NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9:671-675.
28. Nassuth A, Bol JF. 1983. Altered balance of the synthesis of plus strand and minus strand RNAs induced by RNA1 and RNA2 of Alfalfa mosaic virus in the absence of RNA3. Virology 124:75-85.
29. Bancroft JB, Kaesberg P. 1960. Macromolecular particles associated with Alfalfa mosaic virus. Biochim. Biophys. Acta 39:519-527.
30. Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R. 2010. Viral mutation rates. J. Virol. 84:9733-9974.
31. Pressing J, Reanney DC. 1984. Divided genomes and intrinsic noise. J. Mol. Evol. 20:135-146.
32. Chao L. 1991. Levels of selection, evolution of sex in RNA viruses, and the origin of life. J. Theor. Biol. 153:229-246.
33. Fraile A, Alonso-Prados JL, Aranda MA, Bernal JJ, Malpica JM, García-Arenal F. 1997. Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus. J. Virol. 71:934-940.
34. Sullivan ML, Ahlquist P. 1997. Cis-acting signals in bromovirus RNA replication and gene expression: networking with viral proteins and host factors. Semin. Virol. 8:221-230.
35. Takeda M, Nakatsu Y, Ohno S, Seki F, Tahara M, Hashiguchi T, Yanagi Y. 2006. Generation of measles virus with a segmented RNA genome. J. Virol. 80:4242-4248.
36. Iranzo J, Manrubia SC. 2012. Evolutionary dynamics of genome segmentation in multipartite viruses. Proc. Biol. Sci. 279:3812-3819.
37. Ojosnegros S, García-Arriaza J, Escarmis C, Manrubia SC, Perales C, Arias A, Mateu MG, Domingo E. 2011. Viral genome segmentation can result from a trade-off between genetic content and particle stability. PLoS Genet. 7:e1001344. doi:10.1371/journal.pgen.1001344.
38. Goldbach RW. 1986. Molecular evolution of plant RNA viruses. Annu. Rev. Phytopathol. 24:289-310.
39. Nee S. 1987. The evolution of multicompartmental genomes in viruses. J. Mol. Evol. 25:277-281.
40. Sicard A, Yvon M, Timchenko T, Gronenborn B, Michalakis Y, Gutierrez S, Blanc S. 2013. Gene copy number is differentially regulated in a multipartite virus. Nat. Commun. 4:2248. doi:10.1038/ncomms3248.