Identification of microRNA-Size, Small RNAs in escherichia coli

Current Microbiology

Volumn 67, Issue 5, 2013, Pages 609-613

  Kang, Sung Min ^a   Choi, Ji Woong ^a   Lee, Youngkyun ^a   Hong, Su Hyung ^a   Lee, Heon Jin ^a  

^a Kyungpook National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; MESSENGER RNA; MICRORNA; MICRORNA SIZE SMALL RNA; RIBOSOME RNA; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; DNA FLANKING REGION; ESCHERICHIA COLI; GENE EXPRESSION; GENE IDENTIFICATION; GENOME SIZE; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA SEQUENCE; SEQUENCE ANALYSIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; EUKARYOTA;

BASE SEQUENCE; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE ORDER; NUCLEIC ACID CONFORMATION; RNA, BACTERIAL; RNA, SMALL UNTRANSLATED;

EID: 84885854822     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-013-0411-9     Document Type: Article

References (20)

1. Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116(2):281-297
2. Cao F, Li X, Hiew S et al (2009) Dicer independent small RNAs associate with telomeric heterochromatin. RNA 15:1274-1281. doi: rna.1423309
3. Cullen BR (2006) Viruses and microRNAs. Nat Genet 38:S25-S30. doi: 10.1038/ng1793
4. Cullen BR (2011) Viruses and microRNAs: RISCy interactions with serious consequences. Genes Dev 25:1881-1894. doi: 10.1101/gad.17352611
5. Dornenburg JE, DeVita AM, Palumbo MJ, Wade JT (2010) Widespread antisense transcription in Escherichia coli. mBio 1:e00024-10-e00024-10. doi: 10.1128/mBio.00024-10
6. Drinnenberg IA, Weinberg DE, Xie KT et al (2009) RNAi in budding yeast. Science 326:544-550. doi: 10.1126/science.1176945
7. Gottesman S (2005) Micros for microbes: non-coding regulatory RNAs in bacteria. Trends Genet 21:399-404. doi: 10.1016/j.tig.2005.05.008
8. Gottesman S, Storz G (2011) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol. doi: 10.1101/cshperspect.a003798
9. Lee H-J, Hong S-H (2012) Analysis of microRNA-size, small RNAs in Streptococcus mutans by deep sequencing. FEMS Microbiol Lett 326:131-136. doi: 10.1111/j.1574-6968.2011.02441.x
10. Lee YS, Shibata Y, Malhotra A, Dutta A (2009) A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 23:2639-2649. doi: 10.1101/gad.1837609
11. Liu X, Fortin K, Mourelatos Z (2008) MicroRNAs: biogenesis and molecular functions. Brain Pathol 18:113-121. doi: BPA121
12. Livny J, Waldor MK (2007) Identification of small RNAs in diverse bacterial species. Curr Opin Microbiol 10:96-101. doi: 10.1016/j.mib.2007.03.005
13. Miotto P, Forti F, Ambrosi A et al (2012) Genome-wide discovery of small RNAs in mycobacterium tuberculosis. PLoS One 7:e51950. doi: 10.1371/journal. pone.0051950.t004
14. Plasterk R (2006) Micro RNAs in animal development. Cell 124:877-881
15. Stougaard P, Molin S (1981) RNAs involved in copy-number control and incompatibility of plasmid R1. Proc Natl Acad Sci USA 78:6008-6012
16. Tomizawa J, Itoh T, Selzer G, Som T (1981) Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA. Proc Natl Acad Sci USA 78:1421-1425
17. Wang Q, Lee I, Ren J et al (2012) Identification and Functional Characterization of tRNA-derived RNA Fragments (tRFs) in respiratory syncytial virus infection. Mol Ther 21:368-379. doi: 10.1038/mt.2012.237
18. Waters LS, Storz G (2009) Regulatory RNAs in bacteria. Cell 136:615-628. doi: 10.1016/j.cell.2009.01.043
19. Yang J-S, Lai EC (2011) Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants. Mol Cell 43:892-903. doi: 10.1016/j.molcel.2011.07.024
20. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-3415. doi: 10.1093/nar/gkg595