SET7/9-dependent methylation of ARTD1 at K508 stimulates poly-ADP-ribose formation after oxidative stress

Open Biology

Volumn 3, Issue OCT, 2013, Pages

  Kassner, Ingrid ^a   Andersson, Anneli ^a   Fey, Monika ^a   Tomas, Martin ^b   Ferrando May, Elisa ^b   Hottiger, Michael O ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b UNIVERSITY OF KONSTANZ   (Germany)

Author keywords

ADP ribosylation; Lysine methylation; PARP 1; Protein regulation; SET7 9

Indexed keywords

HISTONE; HISTONE LYSINE METHYLTRANSFERASE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; PARP1 PROTEIN, HUMAN; POLY(ADENOSINE DIPHOSPHATE RIBOSE);

ADP-RIBOSYLATION; ANIMAL; ARTICLE; BIOSYNTHESIS; DNA DAMAGE; DNA METHYLATION; ENZYME ACTIVE SITE; GENETICS; HUMAN; LYSINE METHYLATION; METABOLISM; METHYLATION; MOUSE; OXIDATIVE STRESS; PARP-1; PROTEIN PROCESSING; PROTEIN REGULATION; SET7/9; SITE DIRECTED MUTAGENESIS; TUMOR CELL LINE;

ADP-RIBOSYLATION; LYSINE METHYLATION; PARP-1; PROTEIN REGULATION; SET7/9;

ANIMALS; CATALYTIC DOMAIN; CELL LINE, TUMOR; DNA DAMAGE; DNA METHYLATION; HISTONE-LYSINE N-METHYLTRANSFERASE; HISTONES; HUMANS; METHYLATION; MICE; MUTAGENESIS, SITE-DIRECTED; OXIDATIVE STRESS; POLY ADENOSINE DIPHOSPHATE RIBOSE; POLY(ADP-RIBOSE) POLYMERASES; PROTEIN PROCESSING, POST-TRANSLATIONAL;

EID: 84885636888     PISSN: None     EISSN: 20462441     Source Type: Journal    
DOI: 10.1098/rsob.120173     Document Type: Article

References (44)

1. Hottiger MO, Hassa PO, Lüscher B, Schüler H, Koch-Nolte F. 2010 Toward a unified nomenclature for mammalian ADP-ribosyltransferases. Trends Biochem. Sci. 35, 208-219. (doi:10.1016/j.tibs.2009.12.003)
2. Messner S, Schuermann D, Altmeyer M, Kassner I, Schmidt D, Schär P, Müller S, Hottiger MO. 2009 Sumoylation of poly(ADP-ribose) polymerase 1 inhibits its acetylation and restrains transcriptional coactivator function. FASEB J. 23, 3978-3989. (doi:10.1096/fj.09-137695)
3. Hassa PO, Haenni SS, Buerki C, Meier NI, Lane WS, Owen H, Gersbach M, Imhof R, Hottiger MO. 2005 Acetylation of poly(ADP-ribose) polymerase-1 by p300/CREB-binding protein regulates coactivation of NF-κB-dependent transcription. J. Biol. Chem. 280, 40 450-40 464. (doi:10.1074/jbc.M507553200) (Pubitemid 41780532)
4. Altmeyer M, Messner S, Hassa PO, Fey M, Hottiger MO. 2009 Molecular mechanism of poly(ADPribosyl) ation by PARP1 and identification of lysine residues as ADP-ribose acceptor sites. Nucleic Acids Res. 37, 3723-3738. (doi:10.1093/nar/gkp229)
5. Hassa PO, Haenni S, Elser M, Hottiger MO. 2006 Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going? Microbiol. Mol. Biol. Rev. 70, 789-829. (doi:10.1128/MMBR.00040-05) (Pubitemid 44484693)
6. Ji Y, Tulin A. 2010 The roles of PARP1 in gene control and cell differentiation. Curr. Opin. Genet. Dev. 20, 512-518. (doi:10.1016/j.gde.2010. 06.001)
7. Schreiber V, Dantzer F, Ame J-C, De Murcia G. 2006 Poly(ADP-ribose): novel functions for an old molecule. Nat. Rev. Mol. Cell Biol. 7, 517-528. (doi:10.1038/nrm1963) (Pubitemid 44036457)
8. D'Amours D, Desnoyers S, D'Silva I, Poirier G. 1999 Poly(ADP-ribosyl) ation reactions in the regulation of nuclear functions. Biochem. J. 342, 249-268. (doi:10.1042/0264-6021:3420249) (Pubitemid 29425344)
9. Ueda K, Kawaichi M, Okayama H, Hayaishi O. 1979 Poly(ADP-ribosy)ation of nuclear proteins. Enzymatic elongation of chemically synthesized ADP-ribosehistone adducts. J. Biol. Chem. 254, 679-687.
10. Luo X, Kraus WL. 2012 On PAR with PARP: cellular stress signaling through poly(ADP-ribose) and PARP-1. Genes Dev. 26, 417-432. (doi:10.1101/gad.183509. 111)
11. Wang H, Cao R, Xia L, Erdjument-Bromage H, Borchers C, Tempst P, Zhang Y. 2001 Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase. Mol. Cell 8, 1207-1217. (doi:10.1016/S1097- 2765(01)00405-1) (Pubitemid 34084993)
12. Brasacchio D et al. 2009 Hyperglycemia induces a dynamic cooperativity of histone methylase and demethylase enzymes associated with geneactivating epigenetic marks that coexist on the lysine tail. Diabetes 58, 1229-1236. (doi:10.2337/db08-1666)
13. Deering TG, Ogihara T, Trace AP, Maier B, Mirmira RG. 2009 Methyltransferase Set7/9 maintains transcription and euchromatin structure at isletenriched genes. Diabetes 58, 185-193. (doi:10.2337/db08-1150)
14. Li Y, Reddy MA, Miao F, Shanmugam N, Yee JK, Hawkins D, Ren B, Natarajan R. 2008 Role of the histone H3 lysine 4 methyltransferase, SET7/9, in the regulation of NF-kappaB-dependent inflammatory genes. Relevance to diabetes and inflammation. J. Biol. Chem. 283, 26 771-26 781. (doi:10.1074/jbc.M802800200)
15. Wang H et al. 2001 Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor. Science 293, 853-857. (doi:10.1126/science.1060781) (Pubitemid 32743973)
16. Chuikov S et al. 2004 Regulation of p53 activity through lysine methylation. Nature 432, 353-360. (doi:10.1038/nature03117) (Pubitemid 39551664)
17. Kurash J, Lei H, Shen Q, Marston W, Granda B, Fan H, Wall D, Li E, Gaudet F. 2008 Methylation of p53 by Set7/9 mediates p53 acetylation and activity in vivo. Mol. Cell 29, 392-400. (doi:10.1016/j.molcel.2007.12.025) (Pubitemid 351215939)
18. Couture JF, Collazo E, Hauk G, Trievel RC. 2006 Structural basis for the methylation site specificity of SET7/9. Nat. Struct. Mol. Biol. 13, 140-146. (doi:10.1038/nsmb1045) (Pubitemid 43214717)
19. Ea C, Baltimore D. 2009 Regulation of NF-κB activity through lysine monomethylation of p65. Proc. Natl Acad. Sci. USA 105, 18 972-18 977. (doi:10.1073/pnas.0910439106)
20. Munro S, Khaire N, Inche A, Carr S, La Thangue N. 2010 Lysine methylation regulates the pRb tumour suppressor protein. Oncogene 29, 2357-2367. (doi:10.1038/onc.2009.511)
21. Pagans S et al. 2010 The Cellular lysine methyltransferase Set7/9-KMT7 binds HIV-1 TAR RNA, monomethylates the viral transactivator Tat, and enhances HIV transcription. Cell Host Microbe 7, 234-244. (doi:10.1016/j.chom.2010.02. 005)
22. Kouskouti A, Scheer E, Staub A, Tora L, Talianidis I. 2004 Gene-specific modulation of TAF10 function by SET9-mediated methylation. Mol. Cell 14, 175-182. (doi:10.1016/S1097-2765(04)00182-0) (Pubitemid 38515645)
23. Subramanian K, Jia D, Kapoor-Vazirani P, Powell DR, Collins RE, Sharma D, Peng J, Cheng X, Vertino PM. 2008 Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase. Mol. Cell 30, 336-347. (doi:10.1016/j.molcel. 2008.03.022) (Pubitemid 351615317)
24. Tao Y, Neppl RL, Huang ZP, Chen J, Tang RH, Cao R, Zhang Y, Jin SW, Wang DZ. 2011 The histone methyltransferase Set7/9 promotes myoblast differentiation and myofibril assembly. J. Cell Biol. 194, 551-565. (doi:10.1083/jcb.201010090)
25. Dhayalan A, Kudithipudi S, Rathert P, Jeltsch A. 2011 Specificity analysis-based identification of new methylation targets of the SET7/9 protein lysine methyltransferase. Chem. Biol. 18, 111-120. (doi:10.1016/j.chembiol.2010. 11.014)
26. Lehnertz B, Rogalski JC, Schulze FM, Yi L, Lin S, Kast J, Rossi FM. 2011 p53-dependent transcription and tumor suppression are not affected in Set7/9-deficient mice. Mol. Cell 43, 673-680. (doi:10.1016/j.molcel.2011.08.006)
27. Campaner S, Spreafico F, Burgold T, Doni M, Rosato U, Amati B, Testa G. 2011 The methyltransferase Set7/9 (Setd7) is dispensable for the p53-mediated DNA damage response in vivo. Mol. Cell 43, 681-688. (doi:10.1016/j.molcel.2011. 08.007)
28. Huang J et al. 2007 p53 is regulated by the lysine demethylase LSD1. Nature 449, 105-108. (doi:10.1038/nature06092) (Pubitemid 47373772)
29. Wang J et al. 2009 The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. Nat. Genet. 41, 125-129. (doi:10.1038/ng.268)
30. Karytinos A, Forneris F, Profumo A, Ciossani G, Battaglioli E, Binda C, Mattevi A. 2009 A novel mammalian flavin-dependent histone demethylase. J. Biol. Chem. 284, 17 775-17 782. (doi:10.1074/jbc.M109.003087)
31. Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA. 2004 Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941-953. (doi:10.1016/j.cell.2004.12.012) (Pubitemid 40037608)
32. Lee JS, Smith E, Shilatifard A. 2010 The language of histone crosstalk. Cell 142, 682-685. (doi:10.1016/j.cell.2010.08.011)
33. van Attikum H, Gasser SM. 2009 Crosstalk between histone modifications during the DNA damage response. Trends Cell Biol. 19, 207-217. (doi:10.1016/j.tcb.2009.03.001)
34. Yang X-J, Seto E. 2008 Lysine acetylation: codified crosstalk with other posttranslational modifications. Mol. Cell 31, 449-461. (doi:10.1016/j.molcel. 2008.07.002)
35. Trautlein D, Deibler M, Leitenstorfer A, Ferrando-May E. 2010 Specific local induction of DNA strand breaks by infrared multi-photon absorption. Nucleic Acids Res. 38, e14. (doi:10.1093/nar/gkp932)
36. Timinszky G et al. 2009 A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation. Nat. Struct. Mol. Biol. 16, 923-929. (doi:10.1038/nsmb.1664)
37. Krishnakumar R, Kraus W. 2010 PARP-1 regulates chromatin structure and transcription through a KDM5B-dependent pathway. Mol. Cell 39, 736-749. (doi:10.1016/j.molcel.2010.08.014)
38. Hassa PO, Buerki C, Lombardi C, Imhof R, Hottiger MO. 2003 Transcriptional coactivation of nuclear factorκB-dependent gene expression by p300 is regulated by poly(ADP)-ribose polymerase-1. J. Biol. Chem. 278, 45 145-45 153. (doi:10.1074/jbc.M307957200) (Pubitemid 37432647)
39. El-Andaloussi N et al. 2006 Arginine methylation regulates DNA polymerase b. Mol. Cell 22, 51-62. (doi:10.1016/j.molcel.2006.02.013)
40. Todorov IT, Attaran A, Kearsey SE. 1995 BM28, a human member of the MCM2-3-5 family, is displaced from chromatin during DNA replication. J. Cell Biol. 129, 1433-1445. (doi:10.1083/jcb.129.6.1433)
41. Felzien LK, Woffendin C, Hottiger MO, Subbramanian RA, Cohen EA, Nabel GJ. 1998 HIV transcriptional activation by the accessory protein, VPR, is mediated by the p300 co-activator. Proc. Natl Acad. Sci. USA 95, 5281-5286. (doi:10.1073/pnas.95.9.5281) (Pubitemid 28208589)
42. Perkins ND, Agranoff AB, Duckett CS, Nabel GJ. 1994 Transcription factor AP-2 regulates human immunodeficiency virus type 1 gene expression. J. Virol. 68, 6820-6823. (Pubitemid 24294941)
43. Camenisch U, Trautlein D, Clement FC, Fei J, Leitenstorfer A, Ferrando-May E, Naegeli H. 2009 Two-stage dynamic DNA quality check by xeroderma pigmentosum group C protein. EMBO J. 28, 2387-2399. (doi:10.1038/emboj.2009. 187)
44. Clement FC, Kaczmarek N, Mathieu N, Tomas M, Leitenstorfer A, Ferrando-May E, Naegeli H. 2011 Dissection of the xeroderma pigmentosum group C protein function by site-directed mutagenesis. Antioxid. Redox Signal. 14, 2479-2490. (doi:10.1089/ars.2010.3399)