메뉴 건너뛰기




Volumn 6, Issue , 2011, Pages 43-84

An Introduction to Coarse-Graining Approaches: Linking Atomistic and Mesoscales

Author keywords

Coarse grain model; Coarse graining approaches; Dissipative particle dynamics (DPD) technique; Dynamic mean field density functional theory (DDFT); Iterative Boltzmann inversion (IBI); Potential of mean force (PMF)

Indexed keywords


EID: 84885542902     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527631315.ch2     Document Type: Chapter
Times cited : (8)

References (88)
  • 2
    • 0033835685 scopus 로고    scopus 로고
    • Current Opinion in Colloid and Interface Science
    • Shelley, J. C., Shelley, M. Y., Current Opinion in Colloid and Interface Science 5 (2000), pp. 101-110;
    • (2000) , vol.5 , pp. 101-110
    • Shelley, J.C.1    Shelley, M.Y.2
  • 3
    • 0037120092 scopus 로고    scopus 로고
    • Chemical Physics and Physical Chemistry
    • Muller-Plathe, F., Chemical Physics and Physical Chemistry 3 (2002), pp. 754-769;
    • (2002) , vol.3 , pp. 754-769
    • Muller-plathe, F.1
  • 6
    • 33746130897 scopus 로고    scopus 로고
    • Journal of Polymer Science Part B: Polymer Physics
    • Ortiz, V., Nielsen, S. O., Klein, M. L., Discher, D. E., Journal of Polymer Science Part B: Polymer Physics 44 (2006), pp. 1907-1918.
    • (2006) , vol.44 , pp. 1907-1918
    • Ortiz, V.1    Nielsen, S.O.2    Klein, M.L.3    Discher, D.E.4
  • 8
    • 33750181654 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Izvekov, S., Voth, G. A., Journal of Chemical Physics 125 (2006), p. 151101.
    • (2006) , vol.125 , pp. 151101
    • Izvekov, S.1    Voth, G.A.2
  • 9
    • 0000650951 scopus 로고
    • Journal of Chemical Physics
    • A sample of such studies for n-alkanes and poly (ethylene oxide), and poly (methyl methacrylate) are
    • A sample of such studies for n-alkanes and poly (ethylene oxide), and poly (methyl methacrylate) are: Yoon, D. Y.,Smith, G. D.,Matsuda.,T., Journal of Chemical Physics 98 (1993), p. 10037;
    • (1993) , vol.98 , pp. 10037
    • Yoon, D.Y.1    Smith, G.D.2    Matsuda, T.3
  • 10
    • 0000771635 scopus 로고
    • Journal of Chemical Physics
    • Paul, W.,Yoon, D. Y.,Smith.,G. D., Journal of Chemical Physics 103 (1995), p. 1702;
    • (1995) , vol.103 , pp. 1702
    • Paul, W.1    Yoon, D.Y.2    Smith, G.D.3
  • 11
    • 36449000880 scopus 로고
    • Journal of Chemical Physics
    • Smith, G. D., Yoon, D. Y., Journal of Chemical Physics 100 (1993), p. 649;
    • (1993) , vol.100 , pp. 649
    • Smith, G.D.1    Yoon, D.Y.2
  • 12
    • 0031354237 scopus 로고    scopus 로고
    • Macromolecules
    • Paul, W.,Smith, G. D.,Yoon.,D. Y., Macromolecules 30 (1997), p. 7772;
    • (1997) , vol.30 , pp. 7772
    • Paul, W.1    Smith, G.D.2    Yoon, D.Y.3
  • 13
    • 0032315131 scopus 로고    scopus 로고
    • Macromolecules
    • McCoy, J. D., Curro, J. G., Macromolecules 31 (1998), p. 9362;
    • (1998) , vol.31 , pp. 9362
    • McCoy, J.D.1    Curro, J.G.2
  • 17
    • 7044269392 scopus 로고    scopus 로고
    • Journal of Physics: Condensed Matter
    • The case of a multicomponent mixture of complex molecules has been discussed in
    • The case of a multicomponent mixture of complex molecules has been discussed in: Klapp, S. H. L.,Diestler, D. J.,Schoen.,M., Journal of Physics: Condensed Matter 16 (2004), pp. 7331-7352.
    • (2004) , vol.16 , pp. 7331-7352
    • Klapp, S.H.L.1    Diestler, D.J.2    Schoen, M.3
  • 18
    • 4243846291 scopus 로고    scopus 로고
    • Physical Review
    • The derivation uses graph theory and was first published in
    • The derivation uses graph theory and was first published in: Dijkstra, M.,van Roij, R.,Evans.,R., Physical Review E 59(50) (1999), pp. 5744-5771;
    • (1999) , vol.E59 , Issue.50 , pp. 5744-5771
    • Dijkstra, M.1    Van Roij, R.2    Evans, R.3
  • 19
    • 0017919375 scopus 로고
    • Physics and Chemistry of Liquids
    • Accounts of graph theory can be found in
    • Accounts of graph theory can be found in:McDonald, I. R., O'Gorman, S. P., Physics and Chemistry of Liquids 8(2) (1978), pp. 57-98;
    • (1978) , vol.8 , Issue.2 , pp. 57-98
    • McDonald, I.R.1    O'Gorman, S.P.2
  • 20
    • 0003644127 scopus 로고
    • Theory of Simple Liquids
    • Academic, London, U.K.
    • Hansen, J. P., McDonald, I. R., Theory of Simple Liquids, Academic, London, U.K., 1986.
    • (1986)
    • Hansen, J.P.1    McDonald, I.R.2
  • 22
    • 0042640726 scopus 로고
    • Journal of Chemical Physics
    • Widom, B., Journal of Chemical Physics 39 (1963), p. 2808.
    • (1963) , vol.39 , pp. 2808
    • Widom, B.1
  • 23
    • 0000713003 scopus 로고
    • Physical Review Letters
    • The test-particle can be inserted at random positions or on a grid, but must not be biased by the positions of the solvent particles. More sophisticated insertion methods are discussed in
    • The test-particle can be inserted at random positions or on a grid, but must not be biased by the positions of the solvent particles. More sophisticated insertion methods are discussed in: Kumar, S., Szleifer, I., Panagiotopoulos, A., Physical Review Letters 66 (1991), p. 2935;
    • (1991) , vol.66 , pp. 2935
    • Kumar, S.1    Szleifer, I.2    Panagiotopoulos, A.3
  • 24
    • 84947372907 scopus 로고
    • Molecular Physics
    • Siepmann, J. I., Molecular Physics 70 (1990), p. 1145;
    • (1990) , vol.70 , pp. 1145
    • Siepmann, J.I.1
  • 25
    • 6744231939 scopus 로고
    • Molecular Physics
    • Shing, K. S., Gubbins, K. E., Molecular Physics 46 (1982), p. 1109.
    • (1982) , vol.46 , pp. 1109
    • Shing, K.S.1    Gubbins, K.E.2
  • 26
    • 0002756891 scopus 로고
    • Physics Letters A
    • Henderson, R. L., Physics Letters A 49 (1974), p. 197.
    • (1974) , vol.49 , pp. 197
    • Henderson, R.L.1
  • 27
    • 0008238728 scopus 로고
    • Theory of Molecular Fluids
    • Oxford University Press, Oxford
    • Gray, C. G., Gubbins, K. E., Theory of Molecular Fluids, vol. 1, Oxford University Press, Oxford, 1984, p. 178.
    • (1984) , vol.1 , pp. 178
    • Gray, C.G.1    Gubbins, K.E.2
  • 28
    • 0003644127 scopus 로고
    • Theory of Simple Liquids
    • Academic, London, U.K.
    • Hansen, J. P., McDonald, I. R., Theory of Simple Liquids, Academic, London, U.K., 1986.
    • (1986)
    • Hansen, J.P.1    McDonald, I.R.2
  • 31
    • 0042783950 scopus 로고    scopus 로고
    • Journal of Computational Chemistry
    • Reith, D.,Pütz, M.,Müller-Plathe.,F., Journal of Computational Chemistry 24 (2003), p. 1624.
    • (2003) , vol.24 , pp. 1624
    • Reith, D.1    Pütz, M.2    Müller-plathe, F.3
  • 33
    • 0000354159 scopus 로고
    • Proceedings of the Academy of Science Amsterdam
    • Ornstein, L. S., Zernike, F., Proceedings of the Academy of Science Amsterdam 17 (1914), p. 793.
    • (1914) , vol.17 , pp. 793
    • Ornstein, L.S.1    Zernike, F.2
  • 34
    • 0001020183 scopus 로고
    • Physical Review A
    • Rogers, F. J., Young, D. A., Physical Review A 30 (1984), p. 999.
    • (1984) , vol.30 , pp. 999
    • Rogers, F.J.1    Young, D.A.2
  • 37
    • 0037176981 scopus 로고    scopus 로고
    • Macromolecules
    • Bolhuis, P. G., Louis, A. A., Macromolecules 35 (2002), p. 1860.
    • (2002) , vol.35 , pp. 1860
    • Bolhuis, P.G.1    Louis, A.A.2
  • 38
    • 0030543757 scopus 로고    scopus 로고
    • Chemical Physics
    • Soper, A. K., Chemical Physics 202 (1996), p. 295.
    • (1996) , vol.202 , pp. 295
    • Soper, A.K.1
  • 39
    • 26844470089 scopus 로고    scopus 로고
    • Journal of Physical Chemistry B
    • Milano, G., Müller-Plathe, F., Journal of Physical Chemistry B 109 (2005), p. 18609.
    • (2005) , vol.109 , pp. 18609
    • Milano, G.1    Müller-plathe, F.2
  • 40
  • 41
    • 34547554866 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Li, X., Kou, D., Rao, S., Liang, H., Journal of Chemical Physics 124 (2006), p. 204909.
    • (2006) , vol.124 , pp. 204909
    • Li, X.1    Kou, D.2    Rao, S.3    Liang, H.4
  • 43
    • 22944456533 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Hone, T. D.,Izvekov, S.,Voth.,G. A., Journal of Chemical Physics 122 (2005), p. 54105.
    • (2005) , vol.122 , pp. 54105
    • Hone, T.D.1    Izvekov, S.2    Voth, G.A.3
  • 44
    • 14544291957 scopus 로고    scopus 로고
    • Journal of Physical Chemistry B
    • Izvekov, S., Voth, G. A., Journal of Physical Chemistry B 109 (2005), p. 2469.
    • (2005) , vol.109 , pp. 2469
    • Izvekov, S.1    Voth, G.A.2
  • 45
    • 33644929350 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Izvekov, S., Voth, G. A., Journal of Chemical Physics 123 (2005), p. 134105.
    • (2005) , vol.123 , pp. 134105
    • Izvekov, S.1    Voth, G.A.2
  • 46
    • 33644903231 scopus 로고    scopus 로고
    • Journal of Physical Chemistry B
    • Wang, Y., Izvekov, S., Yan, T., Voth, G. A., Journal of Physical Chemistry B 110 (2006), p. 3564.
    • (2006) , vol.110 , pp. 3564
    • Wang, Y.1    Izvekov, S.2    Yan, T.3    Voth, G.A.4
  • 47
    • 0000655706 scopus 로고
    • Europhysics Letters
    • Ercolessi, F., Adams, J. B., Europhysics Letters 26 (1994), p. 583.
    • (1994) , vol.26 , pp. 583
    • Ercolessi, F.1    Adams, J.B.2
  • 48
    • 84950109965 scopus 로고
    • Europhysics Letters
    • Hoogerbrugge, P. J., Koelman, J. M. V. A., Europhysics Letters 19 (1992), pp. 155-160.
    • (1992) , vol.19 , pp. 155-160
    • Hoogerbrugge, P.J.1    Koelman, J.M.V.A.2
  • 49
    • 84950126426 scopus 로고
    • Europhysics Letters
    • Koelman, J. M. V. A., Hoogerbrugge, P. J., Europhysics Letters 21 (1993), pp. 363-368.
    • (1993) , vol.21 , pp. 363-368
    • Koelman, J.M.V.A.1    Hoogerbrugge, P.J.2
  • 50
    • 5544242655 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Groot, R. D., Warren, P. B., Journal of Chemical Physics 107 (1997), pp. 4423-4435.
    • (1997) , vol.107 , pp. 4423-4435
    • Groot, R.D.1    Warren, P.B.2
  • 51
    • 49549102217 scopus 로고    scopus 로고
    • Industrial & Engineering Chemistry Research
    • Maly, M., Posocco, P., Pricl, S., Fermeglia, M., Industrial & Engineering Chemistry Research 47 (2008), pp. 5023-5038.
    • (2008) , vol.47 , pp. 5023-5038
    • Maly, M.1    Posocco, P.2    Pricl, S.3    Fermeglia, M.4
  • 53
    • 0003517281 scopus 로고
    • Principles of Condensed Matter Physics
    • Cambridge University Press, Cambridge
    • Chaikin, P. M., Lubensky, T. C., Principles of Condensed Matter Physics, Cambridge University Press, Cambridge, 1995.
    • (1995)
    • Chaikin, P.M.1    Lubensky, T.C.2
  • 56
    • 7044222119 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Guerrault, X.,Rousseau, B.,Farago.,J., Journal of Chemical Physics 121 (2004), pp. 6538-6546.
    • (2004) , vol.121 , pp. 6538-6546
    • Guerrault, X.1    Rousseau, B.2    Farago, J.3
  • 57
    • 0003474751 scopus 로고
    • Numerical Recipes. The Art of Scientific Computing
    • Cambridge University Press, Cambridge
    • Press, W. H., Flannery, B. P., Teukolsky, S. A., Vetterling, W. T., Numerical Recipes. The Art of Scientific Computing, Cambridge University Press, Cambridge, 1990.
    • (1990)
    • Press, W.H.1    Flannery, B.P.2    Teukolsky, S.A.3    Vetterling, W.T.4
  • 58
    • 0036836877 scopus 로고    scopus 로고
    • Computer Physics of Communications
    • Reith, D.,Meyer, H.,Müller-Plathe.,F., Computer Physics of Communications 148 (2002), pp. 299-313.
    • (2002) , vol.148 , pp. 299-313
    • Reith, D.1    Meyer, H.2    Müller-plathe, F.3
  • 59
    • 0037778654 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Groot, R. D., Journal of Chemical Physics 118 (2003), p. 11265-11277;
    • (2003) , vol.118 , pp. 11265-11277
    • Groot, R.D.1
  • 60
    • 0345098300 scopus 로고    scopus 로고
    • Erratum: Journal of Chemical Physics
    • Erratum: Journal of Chemical Physics 119 (2003), p. 10454.
    • (2003) , vol.119 , pp. 10454
  • 61
  • 62
    • 0035870557 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Kumar, S., Larson, R. G., Journal of Chemical Physics 114 (2001), pp. 6937-6941.
    • (2001) , vol.114 , pp. 6937-6941
    • Kumar, S.1    Larson, R.G.2
  • 63
    • 0037455626 scopus 로고    scopus 로고
    • International Journal of Modern Physics B
    • Pan, G., Manke, C. W., International Journal of Modern Physics B 17 (2003), pp. 231-235.
    • (2003) , vol.17 , pp. 231-235
    • Pan, G.1    Manke, C.W.2
  • 64
    • 84885490498 scopus 로고    scopus 로고
    • DPD simulations of polymer melts: from Rouse dynamics to reptation using soft potentials
    • in: Proceedings of CECAM Workshop on Dissipative Particle Dynamics: Addressing Deficiencies and Establishing New Frontiers, Lausanne, Switzerland, July 16-18
    • Lahmar, F., Rousseau, B., DPD simulations of polymer melts: from Rouse dynamics to reptation using soft potentials, in: Proceedings of CECAM Workshop on Dissipative Particle Dynamics: Addressing Deficiencies and Establishing New Frontiers, Lausanne, Switzerland, July 16-18, 2008; http://www.cecam.org.
    • (2008)
    • Lahmar, F.1    Rousseau, B.2
  • 66
    • 0013373034 scopus 로고    scopus 로고
    • Polymer Physics
    • Oxford University Press, Oxford
    • Rubinstein, M., Colby, R. H., Polymer Physics, Oxford University Press, Oxford, 2006.
    • (2006)
    • Rubinstein, M.1    Colby, R.H.2
  • 67
    • 0000821714 scopus 로고
    • Macromolecules
    • Theodorou, D. N., Suter, U. W., Macromolecules 18 (1985), pp. 1467-1478.
    • (1985) , vol.18 , pp. 1467-1478
    • Theodorou, D.N.1    Suter, U.W.2
  • 68
    • 0003631032 scopus 로고
    • Conformational Theory of Large Molecules: The Rotational Isomeric State Model in Macromolecular Systems
    • John Wiley & Sons, New York
    • Mattice, W. L., Suter, U. W., Conformational Theory of Large Molecules: The Rotational Isomeric State Model in Macromolecular Systems, John Wiley & Sons, New York, 1994.
    • (1994)
    • Mattice, W.L.1    Suter, U.W.2
  • 69
    • 0031623802 scopus 로고    scopus 로고
    • Computational Theory of Polymer Science
    • Honeycutt, J. D., Computational Theory of Polymer Science 8 (1998), pp. 1-8.
    • (1998) , vol.8 , pp. 1-8
    • Honeycutt, J.D.1
  • 70
    • 85010941395 scopus 로고
    • Properties of Polymers
    • Elsevier, Amsterdam
    • van Krevelen, D. W., Properties of Polymers, Elsevier, Amsterdam, 1990.
    • (1990)
    • van Krevelen, D.W.1
  • 71
    • 0004253121 scopus 로고    scopus 로고
    • Prediction of Polymer Properties
    • Marcel Dekker, New York
    • Bicerano, J., Prediction of Polymer Properties, Marcel Dekker, New York, 2002.
    • (2002)
    • Bicerano, J.1
  • 73
    • 84986516367 scopus 로고
    • Journal of Computational Chemistry
    • Blanco, M., Journal of Computational Chemistry 12 (1991), pp. 237-247.
    • (1991) , vol.12 , pp. 237-247
    • Blanco, M.1
  • 74
    • 46149113718 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Akkermans, R. L. C., Journal of Chemical Physics 128 (2008), p. 244904.
    • (2008) , vol.128 , pp. 244904
    • Akkermans, R.L.C.1
  • 75
    • 34547875407 scopus 로고    scopus 로고
    • Journal of Chemical Physics
    • Travis, K. P., Bankhead, M., Good, K., Owens, S. L., Journal of Chemical Physics 127 (2007), p. 014109.
    • (2007) , vol.127 , pp. 014109
    • Travis, K.P.1    Bankhead, M.2    Good, K.3    Owens, S.L.4
  • 76
    • 12344311237 scopus 로고    scopus 로고
    • Molecular Simulations
    • Maiti, A.,Wescott, J.,Kung.,P., Molecular Simulations 31 (2005), pp. 143-149.
    • (2005) , vol.31 , pp. 143-149
    • Maiti, A.1    Wescott, J.2    Kung, P.3
  • 77
    • 0016025821 scopus 로고
    • Polymer Engineering and Science
    • Fedors, R. F., Polymer Engineering and Science 14 (1974), pp. 147-154.
    • (1974) , vol.14 , pp. 147-154
    • Fedors, R.F.1
  • 78
    • 84987013770 scopus 로고
    • Polymer Engineering and Science
    • Fedors, R. F., Polymer Engineering and Science 14 (1974), p. 472.
    • (1974) , vol.14 , pp. 472
    • Fedors, R.F.1
  • 79
    • 84885551964 scopus 로고
    • in: Computational Modeling of Polymers, Bicerano, J. (ed.), Marcel Dekker, New York
    • van Krevelen, D. W., in: Computational Modeling of Polymers, Bicerano, J. (ed.), Marcel Dekker, New York, 1992.
    • (1992)
    • Van Krevelen, D.W.1
  • 81
    • 0003800844 scopus 로고    scopus 로고
    • Hansen Solubility Parameters
    • CRC Press, Boca Raton, FL
    • Hansen, C. M., Hansen Solubility Parameters, CRC Press, Boca Raton, FL, 2000.
    • (2000)
    • Hansen, C.M.1
  • 86
    • 79051470382 scopus 로고    scopus 로고
    • Europhysics Letters
    • Maillet, J. B., Soulard, L., Stoltz, G., Europhysics Letters 78 (2007), p. 68001.
    • (2007) , vol.78 , pp. 68001
    • Maillet, J.B.1    Soulard, L.2    Stoltz, G.3
  • 87
    • 84956259119 scopus 로고
    • Europhysics Letters
    • Espaňol, P.,Warren, P. B., Europhysics Letters 30 (1995), pp. 191-196.
    • (1995) , vol.30 , pp. 191-196
    • Espaňol, P.1    Warren, P.B.2
  • 88
    • 0003589741 scopus 로고
    • Statistical Physics II: Nonequilibrium Statistical Mechanics
    • Springer, Berlin
    • Kubo, R.,Toda, M.,Hashitsume.,N., Statistical Physics II: Nonequilibrium Statistical Mechanics, Springer, Berlin, 1978.
    • (1978)
    • Kubo, R.1    Toda, M.2    Hashitsume, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.