Diverse antimicrobial interactions of halophilic archaea and bacteria extend over geographical distances and cross the domain barrier

MicrobiologyOpen

Volumn 2, Issue 5, 2013, Pages 811-825

  Atanasova, Nina S ^a   Pietilä, Maija K ^a   Oksanen, Hanna M ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Antimicrobial substances; Halocins; Halophilic archaea; Halophilic bacteria; Hypersaline.

Indexed keywords

ARTICLE; BACILLUS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BACTEROIDETES; CHROMOHALOBACTER; CONTROLLED STUDY; FIRMICUTES; GENETIC DISTANCE; GENETIC SIMILARITY; GEOGRAPHIC DISTRIBUTION; GEOGRAPHICAL VARIATION (SPECIES); HALOBACTERIALES; HALOFERAX; HALOMONADACEAE; HALOMONAS; HALOPHILIC ARCHAEON; HALORUBRUM; MICROBIAL DIVERSITY; NATRONOMONAS; NONHUMAN; NUCLEOTIDE SEQUENCE; PONTIBACILLUS; PRIORITY JOURNAL; RHODOVIBRIO; RNA SEQUENCE; SALARCHAEUM; SALICOLA; SALINIVIBRIO; SALISAETA; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES DISTRIBUTION; SPECIES DIVERSITY;

ANTIMICROBIAL SUBSTANCES; HALOCINS; HALOPHILIC ARCHAEA; HALOPHILIC BACTERIA; HYPERSALINE.;

ANTIBIOSIS; ANTIMICROBIAL CATIONIC PEPTIDES; ARCHAEA; BACTERIA; CULTURE MEDIA; DNA, BACTERIAL; ECOSYSTEM; EUROPE; ISRAEL; PEPTIDES; PHYLOGENY; PHYLOGEOGRAPHY; RNA, RIBOSOMAL, 16S; SALINITY; SODIUM CHLORIDE;

EID: 84885447347     PISSN: None     EISSN: 20458827     Source Type: Journal    
DOI: 10.1002/mbo3.115     Document Type: Article

References (52)

1. Antón, J., R. Rosselló-Mora, F. Rodríguez-Valera, and R. Amann . 2000. Extremely halophilic bacteria in crystallizer ponds from solar salterns. Appl. Environ. Microbiol. 66:3052-3057.
2. Atanasova, N. S., E. Roine, A. Oren, D. H. Bamford, and H. M. Oksanen . 2012. Global network of specific virus-host interactions in hypersaline environments. Environ. Microbiol. 14:426-440.
3. De Vuyst, L., and F. Leroy . 2007. Bacteriocins from lactic acid bacteria: production, purification, and food applications. J. Mol. Microbiol. Biotechnol. 13:194-199.
4. Fimland, G., V. G. H. Eijsink, and J. Nissen-Meyer . 2002. Comparative studies of immunity proteins of pediocin-like bacteriocins. Microbiology 148:3661-3670.
5. Ghai, R., L. Pašić, A. B. Fernández, A.-B. Martin-Cuadrado, C. M. Mizuno, K. D. McMahon, et al. 2011. New abundant microbial groups in aquatic hypersaline environments. Sci. Rep. 1: 135. doi:10.1038/srep00135.
6. Gonzalez, C., C. Gutierrez, and C. Ramirez . 1978. Halobacterium vallismortis sp. nov. An amolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can. J. Microbiol. 24:710-715.
7. Guixa-Boixareu, N., J. I. Calderón-Paz, M. Heldal, G. Bratbak, and C. Pedrós-Alió . 1996. Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient. Aquat. Microb. Ecol. 11:215-227.
8. Hauer, G., and A. Rogerson . 2005. Heterotrophic protozoa from hypersaline environments. Pp. 519-539 in N. Gunde-Cimerman, A. Oren and A. Plemenitas, eds. Adaptation to life at high salt concentrations in archaea, bacteria, and eukarya. Springer, Dordrecht, The Netherlands.
9. Javor, B., C. Requadt, and W. Stoeckenius . 1982. Box-shaped, halophilic bacteria. J. Bacteriol. 151:1532-1542.
10. Juez, G., F. Rodríguez-Valera, A. Ventosa, and D. J. Kushner . 1986. Haloarcula hispanica spec. nov. and Haloferax gibbonsii spec. nov., two new species of extremely halophilic archaebacteria. Syst. Appl. Microbiol. 8:75-79.
11. Kavitha, P., A. P. Lipton, A. R. Sarika, and M. S. Aishwarya . 2011. Growth characteristics and halocin production by a new isolate, Haloferax volcanii KPS1 from Kovalam solar saltern (India). Res. J. Biol. Sci. 6:257-262.
12. Kirkup, B. C., and M. A. Riley . 2004. Antibiotic-mediated antagonism leads to a bacterial game of rock-paper-scissors in vivo. Nature 428:412-414.
13. Kis-Papo, T., and A. Oren . 2000. Halocins: are they involved in the competition between halobacteria in saltern ponds? Extremophiles 4:35-41.
14. Kukkaro, P., and D. H. Bamford . 2009. Virus-host interactions in environments with a wide range of ionic strenghts. Environ. Microbiol. Rep. 1:71-77.
15. Litchfield, C. D., and P. M. Gillevet . 2002. Microbial diversity and complexity in hypersaline environments: a preliminary assessment. J. Ind. Microbiol. Biotechnol. 28:48-55.
16. Madera, C., P. Garcia, A. Rodriguez, J. E. Suarez, and B. Martinez . 2009. Prophage induction in Lactococcus lactis by the bacteriocin Lactococcin 972. Int. J. Food Microbiol. 129:99-102.
17. Meseguer, I., and F. Rodríguez-Valera . 1985. Production and purification of halocin H4. FEMS Microbiol. Lett. 28:177-182.
18. Meseguer, I., F. Rodríguez-Valera, and A. Ventosa . 1986. Antagonistic interactions among halobacteria due to halocin production. FEMS Microbiol. Lett. 36:177-182.
19. + antiporter by halocin H6. J. Biol. Chem. 270:6450-6455.
20. Moll, G. N., W. N. Konings, and A. J. Driessen . 1999. Bacteriocins: mechanism of membrane insertion and pore formation. Antonie Van Leeuwenhoek 76:185-198.
21. Mylvaganam, S., and P. P. Dennis . 1992. Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. Genetics 130:399-410.
22. Nissen-Meyer, J., and I. F. Nes . 1997. Ribosomally synthesized antimicrobial peptides: their function, structure, biogenesis, and mechanism of action. Arch. Microbiol. 167:67-77.
23. Nuttall, S. D., and M. L. Dyall-Smith . 1993. HF1 and HF2: novel bacteriophages of halophilic archaea. Virology 197:678-684.
24. O'Connor, E. M., and R. F. Shand . 2002. Halocins and sulfolobicins: the emerging story of archaeal protein and peptide antibiotics. J. Ind. Microbiol. Biotechnol. 28:23-31.
25. Oren, A. 1983. Halobacterium sodomense sp. nov., a Dead Sea halobacterium with an extremely high magnesium requirement. Int. J. Syst. Bacteriol. 33:381-386.
26. Oren, A. 2002a. Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J. Ind. Microbiol. Biotechnol. 28:56-63.
27. Oren, A. 2002b. Molecular ecology of extremely halophilic archaea and bacteria. FEMS Microbiol. Ecol. 39:1-7.
28. Oren, A. 2008. Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Systems 4:2-13.
29. Oren, A., M. Ginzburg, L. I. Hochstein, and B. E. Volcani . 1990. Haloarcula marismortui (Volcani) sp. nov., nom. rev., an extremely halophilic bacterium from the Dead Sea. Int. J. Syst. Bacteriol. 40:209-210.
30. Oren, A., A. Ventosa, M. C. Gutierrez, and M. Kamekura . 1999. Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt). Int. J. Syst. Bacteriol. 49:1149-1155.
31. Pašić, L., B. H. Velikonja, and N. P. Ulrich . 2008. Optimization of the culture conditions for the production of a bacteriocin from halophilic archaeon Sech7a. Prep. Biochem. Biotechnol. 38:229-245.
32. Pietilä, M. K., E. Roine, L. Paulin, N. Kalkkinen, and D. H. Bamford . 2009. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol. Microbiol. 72:307-319.
33. Prangishvili, D., I. Holz, E. Stieger, S. Nickell, J. K. Kristjansson, and W. Zillig . 2000. Sulfolobicins, specific proteinaceous toxins produced by strains of the extremely thermophilic archaeal genus Sulfolobus. J. Bacteriol. 182:2985-2988.
34. Riley, M. A. 1998. Molecular mechanisms of bacteriocin evolution. Ann. Rev. Genet. 32:255-278.
35. Riley, M. A., and J. E. Wertz . 2002. Bacteriocins: evolution, ecology, and application. Annu. Rev. Microbiol. 56:117-137.
36. Rodríguez-Valera, F., G. Juez, and D. J. Kushner . 1982. Halocins: salt-dependent bacteriocins produced by extremely halophilic rods. Can. J. Microbiol. 28:151-154.
37. Rodríguez-Valera, F., A. B. Martin-Cuadrado, B. Rodriguez-Brito, L. Pasić, F. D. Thingstad, F. Rohwer, et al. 2009. Explaining microbial population genomics through phage predation. Nat. Rev. Microbiol. 7:828-836.
38. Roine, E., and H. M. Oksanen . 2011. Viruses from the hypersaline environment. Pp. 153-172 in A. Ventosa, A. Oren and Y. Ma, eds. Halophiles and hypersaline environments: current research and future trends. Springer, Heidelberg, Germany.
39. Sabet, S., L. Diallo, L. Hays, W. Jung, and J. G. Dillon . 2009. Characterization of halophiles isolated from solar salterns in Baja California, Mexico. Extremophiles 13:643-656.
40. Shand, R. F., and K. J. Leyva . 2007. Peptide and protein antibiotics from the domain Archaea: halocins and sulfolobicins. Pp. 93-109 in M. A. Riley and M. A. Chavan, eds. Bacteriocins: ecology and evolution. Springer, New York, NY.
41. Shand, R. F., and K. J. Leyva . 2008. Archaeal antimicrobials: an undiscovered country. Pp. 233-243 in P. Blum, ed. Archaea: new models for prokaryotic biology. Caister Academic Press, Norfolk, U.K.
42. Sun, C., Y. Li, S. Mei, Q. Lu, L. Zhou, and H. Xiang . 2005. A single gene directs both production and immunity of halocin C8 in a haloarchaeal strain AS7092. Mol. Microbiol. 57:537-549.
43. Tagg, J. R., A. S. Dajani, and L. W. Wannamaker . 1976. Bacteriocins of gram-positive bacteria. Bacteriol. Rev. 40:722-756.
44. Takashina, T., T. Hamamoto, K. Otozai, W. D. Grant, and K. Horikoshi . 1990. Haloarcula japonica sp. nov., a new triangular halophilic archaebacterium. Syst. Appl. Microbiol. 13:177-181.
45. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar . 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
46. Torreblanca, M., I. Meseguer, and A. Ventosa . 1994. Production of halocin is a practically universal feature of archaeal halophilic rods. Lett. Appl. Microbiol. 19:201-205.
47. Torreblanca, M., F. Rodríguez-Valera, G. Juez, A. Ventosa, M. Kamekura, and M. Kates . 1986. Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen. nov. Syst. Appl. Microbiol. 8:89-99.
48. Veesler, D., and C. Cambillau . 2011. A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol. Mol. Biol. Rev. 75:423-433.
49. Ventosa, A. 2006. Unusual micro-organisms from unusual habitats: hypersaline environments. Pp. 223-230 in N. A. Logan, H. M. Lappin-Scott and P. C. F. Oyston, eds. Prokaryotic diversity: mechanisms and significance. Cambridge University Press, Cambridge, U.K.
50. Wachsman, M. B., M. E. Farias, E. Takeda, F. Sesma, A. P. de Ruiz Holgado, R. A. de Torres, et al. 1999. Antiviral activity of enterocin CRL35 against herpesviruses. Int. J. Antimicrob. Agents 12:293-299.
51. Wachsman, M. B., V. Castilla, A. P. de Ruiz Holgado, R. A. de Torres, F. Sesma, and C. E. Coto . 2003. Enterocin CRL35 inhibits late stages of HSV-1 and HSV-2 replication in vitro. Antiviral Res. 58:17-24.
52. Yamada, K., M. Hirota, Y. Niimi, H. A. Nguyen, Y. Takahara, Y. Kamio, et al. 2006. Nucleotide sequences and organization of the genes for carotovoricin (Ctv) from Erwinia carotovora indicate that Ctv evolved from the same ancestor as Salmonella typhi prophage. Biosci. Biotechnol. Biochem. 70:2236-2247.