-
1
-
-
57749195712
-
RNA-Seq a revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. & Snyder, M. RNA-Seq: a revolutionary tool for transcriptomics. Nature reviews 10, 57-63 (2009).
-
(2009)
Nature Reviews
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
2
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
3
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills, R. E. et al. Mapping copy number variation by population-scale genome sequencing. Nature 470, 59-65 (2011).
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
-
4
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
DOI 10.1073/pnas.0506580102
-
Subramanian, A. et al.Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 102, 15545-15550 (2005). (Pubitemid 41528093)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
5
-
-
34249663294
-
Analyzing gene expression data in terms of gene sets: Methodological issues
-
DOI 10.1093/bioinformatics/btm051
-
Goeman, J. J. & Buhlmann, P. Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics 23, 980-987 (2007). (Pubitemid 47050585)
-
(2007)
Bioinformatics
, vol.23
, Issue.8
, pp. 980-987
-
-
Goeman, J.J.1
Buhlmann, P.2
-
7
-
-
34547483895
-
Improving gene set analysis of microarray data by SAM-GS
-
Dinu, I. et al. Improving gene set analysis of microarray data by SAM-GS. BMC Bioinformatics 8, 242 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 242
-
-
Dinu, I.1
-
8
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
DOI 10.1038/nrg1749
-
Allison, D. B., Cui, X., Page, G. P. & Sabripour, M. Microarray data analysis: from disarray to consolidation and consensus. Nature reviews 7, 55-65 (2006). (Pubitemid 41828948)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.1
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
9
-
-
67649584052
-
Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder
-
Holmans, P. et al. Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder. Am J Hum Genet 85, 13-24 (2009).
-
(2009)
Am J Hum Genet
, vol.85
, pp. 13-24
-
-
Holmans, P.1
-
10
-
-
36249029788
-
Pathway-based approaches for analysis of genomewide association studies
-
DOI 10.1086/522374
-
Wang, K., Li, M. & Bucan, M. Pathway-Based Approaches for Analysis of Genomewide Association Studies. Am J Hum Genet 81, 1278-1283 (2007). (Pubitemid 350211456)
-
(2007)
American Journal of Human Genetics
, vol.81
, Issue.6
, pp. 1278-1283
-
-
Wang, K.1
Li, M.2
Bucan, M.3
-
11
-
-
77953123145
-
Insights into colon cancer etiology via a regularized approach to gene set analysis of gwas data
-
Chen, L. S. et al. Insights into Colon Cancer Etiology via a Regularized Approach to Gene Set Analysis of GWAS Data. American Journal of Human Genetics 86, 860-871 (2010).
-
(2010)
American Journal of Human Genetics
, vol.86
, pp. 860-871
-
-
Chen, L.S.1
-
12
-
-
0345832338
-
A global test for groups fo genes: Testing association with a clinical outcome
-
DOI 10.1093/bioinformatics/btg382
-
Goeman, J. J., van de Geer, S. A., deKort, F.&van Houwelingen, H. C.Aglobal test for groups of genes: testing association with a clinical outcome. Bioinformatics 20, 93-99 (2004). (Pubitemid 38088346)
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 93-99
-
-
Goeman, J.J.1
Van De Geer, S.2
De Kort, F.3
Van Houwellingen, H.C.4
-
13
-
-
77958614226
-
Self-contained gene-set analysis of expression data: An evaluation of existing and novel methods
-
Fridley, B. L., Jenkins, G. D. & Biernacka, J. M. Self-contained gene-set analysis of expression data: an evaluation of existing and novel methods. PLoS One 5, e12693 (2010).
-
(2010)
PLoS One
, vol.5
-
-
Fridley, B.L.1
Jenkins, G.D.2
Biernacka, J.M.3
-
14
-
-
34648837055
-
Combining p-values in large-scale genomics experiments
-
DOI 10.1002/pst.304
-
Zaykin, D. V., Zhivotovsky, L. A., Czika, W., Shao, S. & Wolfinger, R. D. Combining p-values in large-scale genomics experiments. Pharm Stat 6, 217-226 (2007). (Pubitemid 47455261)
-
(2007)
Pharmaceutical Statistics
, vol.6
, Issue.3
, pp. 217-226
-
-
Zaykin, D.V.1
Zhivotovsky, L.A.2
Czika, W.3
Shao, S.4
Wolfinger, R.D.5
-
15
-
-
84859909127
-
Use of the gamma method for self-contained gene-set analysis of SNP data
-
Biernacka, J. M., Jenkins, G. D.,Wang, L., Moyer, A. M. & Fridley, B. L. Use of the gamma method for self-contained gene-set analysis of SNP data. Eur J Hum Genet 20, 565-571 (2012).
-
(2012)
Eur J Hum Genet
, vol.20
, pp. 565-571
-
-
Biernacka, J.M.1
Jenkins, D.2
Wang G, L.3
Moyer, A.M.4
Fridley, B.L.5
-
16
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M.&Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28, 27-30 (2000). (Pubitemid 30047706)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
18
-
-
79956226254
-
Human leukocyte antigen genotypes in the genetic control of adaptive immune responses to smallpox vaccine
-
Ovsyannikova, I. G., Vierkant, R. A., Pankratz, V. S., Jacobson, R. M. & Poland, G. A. Human leukocyte antigen genotypes in the genetic control of adaptive immune responses to smallpox vaccine. The Journal of infectious diseases 203, 1546-1555 (2011).
-
(2011)
The Journal of Infectious Diseases
, vol.203
, pp. 1546-1555
-
-
Ovsyannikova, I.G.1
Vierkant, R.A.2
Pankratz, V.S.3
Jacobson, R.M.4
Poland, G.A.5
-
19
-
-
79960142368
-
Common SNPs/haplotypes in IL18R1 and IL18 genes are associated with variations in humoral immunity to smallpox vaccination in Caucasians and African Americans
-
Haralambieva, I. H. et al.Common SNPs/haplotypes in IL18R1 and IL18 genes are associated with variations in humoral immunity to smallpox vaccination in Caucasians and African Americans. The Journal of infectious diseases 204, 433-441 (2011).
-
(2011)
The Journal of Infectious Diseases
, vol.204
, pp. 433-441
-
-
Haralambieva, I.H.1
-
20
-
-
67249108642
-
Gender effects on humoral immune responses to smallpox vaccine
-
Kennedy, R. B. et al. Gender effects on humoral immune responses to smallpox vaccine. Vaccine 27, 3319-3323 (2009).
-
(2009)
Vaccine
, vol.27
, pp. 3319-3323
-
-
Kennedy, R.B.1
-
21
-
-
68149161001
-
Statistical approach to estimate vaccinia-specific neutralizing antibody titers using a high-throughput assay
-
Kennedy, R. et al. Statistical approach to estimate vaccinia-specific neutralizing antibody titers using a high-throughput assay. Clinical and vaccine immunology: CVI 16, 1105-1112 (2009).
-
(2009)
Clinical and Vaccine Immunology: CVI
, vol.16
, pp. 1105-1112
-
-
Kennedy, R.1
-
24
-
-
41149085992
-
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
-
DOI 10.1093/biostatistics/kxm030
-
Robinson, M. D. & Smyth, G. K. Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics 9, 321-332 (2008). (Pubitemid 351438556)
-
(2008)
Biostatistics
, vol.9
, Issue.2
, pp. 321-332
-
-
Robinson, M.D.1
Smyth, G.K.2
-
25
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
DOI 10.1093/bioinformatics/btm453
-
Robinson, M. D. & Smyth, G. K. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 23, 2881-2887 (2007). (Pubitemid 350162894)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
26
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
Bullard, J. H., Purdom, E., Hansen, K. D. & Dudoit, S. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11, 94 (2010).
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
28
-
-
33645556520
-
A tail strength measure for assessing the overall univariate significance in a dataset
-
Taylor, J. & Tibshirani, R. A tail strength measure for assessing the overall univariate significance in a dataset. Biostatistics 7, 167-181 (2006).
-
(2006)
Biostatistics
, vol.7
, pp. 167-181
-
-
Taylor, J.1
Tibshirani, R.2
|