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Volumn 4, Issue SEP, 2013, Pages

Energy-mediated vs. ammonium-regulated gene expression in the obligate ammonia-oxidizing bacterium, Nitrosococcus oceani

Author keywords

Ammonia oxidizing bacteria; Ammonium; Global gene expression; Hydroxylamine; Microarray; Nitrosococcus; Redox; Signaling

Indexed keywords

HYDROXYLAMINE;

EID: 84885398575     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00277     Document Type: Article
Times cited : (21)

References (43)
  • 1
    • 0037065671 scopus 로고    scopus 로고
    • Nitrosocyanin, a red cupredoxin-like protein from Nitrosomonas europaea
    • doi:10.1021/bi015908w
    • Arciero, D. M., Pierce, B. S., Hendrich, M. P., and Hooper, A. B. (2002). Nitrosocyanin, a red cupredoxin-like protein from Nitrosomonas europaea. Biochemistry 41, 1703-1709. doi:10.1021/bi015908w.
    • (2002) Biochemistry , vol.41 , pp. 1703-1709
    • Arciero, D.M.1    Pierce, B.S.2    Hendrich, M.P.3    Hooper, A.B.4
  • 2
    • 35848950017 scopus 로고    scopus 로고
    • The impact of genome analyses on our understanding of ammonia-oxidizing bacteria
    • doi:10.1146/annurev.micro.61.080706.093449
    • Arp, D. J., Chain, P. S., and Klotz, M. G. (2007). The impact of genome analyses on our understanding of ammonia-oxidizing bacteria. Annu. Rev. Microbiol. 61, 503-528. doi:10.1146/annurev.micro.61.080706.093449.
    • (2007) Annu. Rev. Microbiol. , vol.61 , pp. 503-528
    • Arp, D.J.1    Chain, P.S.2    Klotz, M.G.3
  • 3
    • 0036038187 scopus 로고    scopus 로고
    • Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea
    • doi:10.1007/s00203-002-0452-0
    • Arp, D. J., Sayavedra-Soto, L. A., and Hommes, N. G. (2002). Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea. Arch. Microbiol. 178, 250-255. doi:10.1007/s00203-002-0452-0.
    • (2002) Arch. Microbiol. , vol.178 , pp. 250-255
    • Arp, D.J.1    Sayavedra-Soto, L.A.2    Hommes, N.G.3
  • 4
    • 14944379569 scopus 로고    scopus 로고
    • Spectroscopic and density functional studies of the red copper site in nitrosocyanin:role of the protein in determining active site geometric and electronic structure
    • doi:10.1021/ja044412+
    • Basumallick, L., Sarangi, R., Debeergeorge, S., Elmore, B., Hooper, A. B., Hedman, B., et al. (2005). Spectroscopic and density functional studies of the red copper site in nitrosocyanin:role of the protein in determining active site geometric and electronic structure. J. Am. Chem. Soc. 127, 3531-3544. doi:10.1021/ja044412+.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 3531-3544
    • Basumallick, L.1    Sarangi, R.2    Debeergeorge, S.3    Elmore, B.4    Hooper, A.B.5    Hedman, B.6
  • 5
    • 25144469781 scopus 로고    scopus 로고
    • Structure and sequence conservation of hao cluster genes of autotrophic ammonia-oxidizing bacteria:evidence for their evolutionary history
    • doi:10.1128/AEM.71.9.5371-5382.2005
    • Bergmann, D. J., Hooper, A. B., and Klotz, M. G. (2005). Structure and sequence conservation of hao cluster genes of autotrophic ammonia-oxidizing bacteria:evidence for their evolutionary history. Appl. Environ. Microbiol. 71, 5371-5382. doi:10.1128/AEM.71.9.5371-5382.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 5371-5382
    • Bergmann, D.J.1    Hooper, A.B.2    Klotz, M.G.3
  • 6
    • 60149099674 scopus 로고    scopus 로고
    • Transcription of genes coding for metabolic key functions in Nitrosomonas europaea during aerobic and anaerobic growth
    • doi:10.1159/000142531
    • Beyer, S., Gilch, S., Meyer, O., and Schmidt, I. (2009). Transcription of genes coding for metabolic key functions in Nitrosomonas europaea during aerobic and anaerobic growth. J. Mol. Microbiol. Biotechnol. 16, 187-197. doi:10.1159/000142531.
    • (2009) J. Mol. Microbiol. Biotechnol. , vol.16 , pp. 187-197
    • Beyer, S.1    Gilch, S.2    Meyer, O.3    Schmidt, I.4
  • 7
    • 15444372598 scopus 로고    scopus 로고
    • Influence of starvation on potential ammonia-oxidizing activity and amoA mRNA levels of Nitrosospira briensis
    • doi:10.1128/AEM.71.3.1276-1282.2005
    • Bollmann, A., Schmidt, I., Saunders, A. M., and Nicolaisen, M. H. (2005). Influence of starvation on potential ammonia-oxidizing activity and amoA mRNA levels of Nitrosospira briensis. Appl. Environ. Microbiol. 71, 1276-1282. doi:10.1128/AEM.71.3.1276-1282.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1276-1282
    • Bollmann, A.1    Schmidt, I.2    Saunders, A.M.3    Nicolaisen, M.H.4
  • 8
    • 84875387626 scopus 로고    scopus 로고
    • Complete genome sequence of Nitrosomonas sp. Is79-an ammonia oxidizing bacterium adapted to low ammonium
    • Bollmann, A., Sedlacek, C. J., Norton, J., Laanbroek, H. J., Suwa, Y., Stein, L. Y., et al. (2012). Complete genome sequence of Nitrosomonas sp. Is79-an ammonia oxidizing bacterium adapted to low ammonium. Stand. Genomic Sci. 7, 351-896.
    • (2012) Stand. Genomic Sci. , vol.7 , pp. 351-896
    • Bollmann, A.1    Sedlacek, C.J.2    Norton, J.3    Laanbroek, H.J.4    Suwa, Y.5    Stein, L.Y.6
  • 9
    • 79952346198 scopus 로고    scopus 로고
    • Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans:calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis
    • doi:10.1111/j.1574-6941.2010.01027.x
    • Campbell, M. A., Chain, P. S., Dang, H., El Sheikh, A. F., Norton, J. M., Ward, N. L., et al. (2011a). Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans:calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis.' FEMS Microbiol. Ecol. 76, 39-48. doi:10.1111/j.1574-6941.2010.01027.x.
    • (2011) FEMS Microbiol. Ecol. , vol.76 , pp. 39-48
    • Campbell, M.A.1    Chain, P.S.2    Dang, H.3    El Sheikh, A.F.4    Norton, J.M.5    Ward, N.L.6
  • 10
    • 79960619274 scopus 로고    scopus 로고
    • Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria
    • doi:10.1111/j.1574-6968.2011.02340.x
    • Campbell, M. A., Nyerges, G., Kozlowski, J. A., Poret-Peterson, A. T., Stein, L. Y., and Klotz, M. G. (2011b). Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria. FEMS Microbiol. Lett. 322, 82-89. doi:10.1111/j.1574-6968.2011.02340.x.
    • (2011) FEMS Microbiol. Lett. , vol.322 , pp. 82-89
    • Campbell, M.A.1    Nyerges, G.2    Kozlowski, J.A.3    Poret-Peterson, A.T.4    Stein, L.Y.5    Klotz, M.G.6
  • 11
    • 33745172807 scopus 로고    scopus 로고
    • Transcriptome of Nitrosomonas europaea with a disrupted nitrite reductase (nirK) gene
    • doi:10.1128/AEM.02958-05
    • Cho, C. M.-H., Yan, T., Liu, X., Wu, L., Zhou, J., and Stein, L. Y. (2006). Transcriptome of Nitrosomonas europaea with a disrupted nitrite reductase (nirK) gene. Appl. Environ. Microbiol. 72, 4450-4454. doi:10.1128/AEM.02958-05.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4450-4454
    • Cho, C.M.-H.1    Yan, T.2    Liu, X.3    Wu, L.4    Zhou, J.5    Stein, L.Y.6
  • 12
    • 84355161764 scopus 로고    scopus 로고
    • Hydrocarbon monooxygenase in Mycobacterium:recombinant expression of a member of the ammonia monooxygenase superfamily
    • doi:10.1038/ismej.2011.98
    • Coleman, N. V., Le, N. B., Ly, M. A., Ogawa, H. E., McCarl, V., Wilson, N. L., et al. (2012). Hydrocarbon monooxygenase in Mycobacterium:recombinant expression of a member of the ammonia monooxygenase superfamily. ISME J. 6, 171-182. doi:10.1038/ismej.2011.98.
    • (2012) ISME J. , vol.6 , pp. 171-182
    • Coleman, N.V.1    Le, N.B.2    Ly, M.A.3    Ogawa, H.E.4    McCarl, V.5    Wilson, N.L.6
  • 13
    • 79956065277 scopus 로고    scopus 로고
    • Effects of nitrite on ammonia-oxidizing activity and gene regulation in three ammonia-oxidizing bacteria
    • doi:10.1111/j.1574-6968.2011.02277.x
    • Cua, L. S., and Stein, L. Y. (2011). Effects of nitrite on ammonia-oxidizing activity and gene regulation in three ammonia-oxidizing bacteria. FEMS Microbiol. Lett. 319, 169-175. doi:10.1111/j.1574-6968.2011.02277.x.
    • (2011) FEMS Microbiol. Lett. , vol.319 , pp. 169-175
    • Cua, L.S.1    Stein, L.Y.2
  • 14
    • 33847129611 scopus 로고    scopus 로고
    • Cytochromes P460 and c'-beta; a new family of high-spin cytochromes c
    • doi:10.1016/j.febslet.2007.01.068
    • Elmore, B. O., Bergmann, D. J., Klotz, M. G., and Hooper, A. B. (2007). Cytochromes P460 and c'-beta; a new family of high-spin cytochromes c. FEBS Lett. 581, 911-916. doi:10.1016/j.febslet.2007.01.068.
    • (2007) FEBS Lett. , vol.581 , pp. 911-916
    • Elmore, B.O.1    Bergmann, D.J.2    Klotz, M.G.3    Hooper, A.B.4
  • 15
    • 52949110149 scopus 로고    scopus 로고
    • Ammonia-dependent differential regulation of the gene cluster that encodes ammonia monooxygenase in Nitrosococcus oceani ATCC 19707
    • doi:10.1111/j.1462-2920.2008.01766.x
    • El Sheikh, A. F., and Klotz, M. G. (2008). Ammonia-dependent differential regulation of the gene cluster that encodes ammonia monooxygenase in Nitrosococcus oceani ATCC 19707. Environ. Microbiol. 10, 3026-3035. doi:10.1111/j.1462-2920.2008.01766.x.
    • (2008) Environ. Microbiol. , vol.10 , pp. 3026-3035
    • El Sheikh, A.F.1    Klotz, M.G.2
  • 16
    • 37849016357 scopus 로고    scopus 로고
    • Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707
    • doi:10.1128/AEM.01654-07
    • El Sheikh, A. F., Poret-Peterson, A. T., and Klotz, M. G. (2008). Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707. Appl. Environ. Microbiol. 74, 312-318. doi:10.1128/AEM.01654-07.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 312-318
    • El Sheikh, A.F.1    Poret-Peterson, A.T.2    Klotz, M.G.3
  • 17
    • 79951810312 scopus 로고    scopus 로고
    • Quantitative analysis of a deeply sequenced marine microbial metatranscriptome
    • doi:10.1038/ismej.2010.141
    • Gifford, S. M., Sharma, S., Rinta-Kanto, J. M., and Moran, M. A. (2010). Quantitative analysis of a deeply sequenced marine microbial metatranscriptome. ISME J. 5, 461-472. doi:10.1038/ismej.2010.141.
    • (2010) ISME J. , vol.5 , pp. 461-472
    • Gifford, S.M.1    Sharma, S.2    Rinta-Kanto, J.M.3    Moran, M.A.4
  • 18
    • 79955493096 scopus 로고    scopus 로고
    • Characterizing bacterial gene expression in nitrogen cycle metabolism with RT-qPCR
    • Research on Nitrification and Related Processes, Pt B, eds. M. G. Klotz and L.Y. Stein (San Diego, CA:Elsevier Academic Press Inc), doi:10.1016/B978-0-12-386489-5.00014-2
    • Graham, J. E., Wantland, N. B., Campbell, M., and Klotz, M. G. (2011). "Characterizing bacterial gene expression in nitrogen cycle metabolism with RT-qPCR," in Methods Enzymol., Vol. 46 :Research on Nitrification and Related Processes, Pt B, eds. M. G. Klotz and L.Y. Stein (San Diego, CA:Elsevier Academic Press Inc), 345-372. doi:10.1016/B978-0-12-386489-5.00014-2.
    • (2011) Methods Enzymol , vol.46 , pp. 345-372
    • Graham, J.E.1    Wantland, N.B.2    Campbell, M.3    Klotz, M.G.4
  • 19
    • 84885338102 scopus 로고    scopus 로고
    • Nitrate ammonification by Nautilia profundicola AmH:experimental evidence consistent with a free hydroxylamine intermediate
    • doi:10.3389/fmicb.2013.00180
    • Hanson, T. E., Campbell, B. J., Kalis, K. M., Campbell, M. A., and Klotz, M. G. (2013). Nitrate ammonification by Nautilia profundicola AmH:experimental evidence consistent with a free hydroxylamine intermediate. Front. Microbiol. 4:180. doi:10.3389/fmicb.2013.00180.
    • (2013) Front. Microbiol. , vol.4 , pp. 180
    • Hanson, T.E.1    Campbell, B.J.2    Kalis, K.M.3    Campbell, M.A.4    Klotz, M.G.5
  • 20
    • 0036428681 scopus 로고    scopus 로고
    • The roles of the three gene copies encoding hydroxylamine oxidoreductase in Nitrosomonas europaea
    • doi:10.1007/s00203-002-0477-4
    • Hommes, N. G., Sayavedra-Soto, L. A., and Arp, D. J. (2002). The roles of the three gene copies encoding hydroxylamine oxidoreductase in Nitrosomonas europaea. Arch. Microbiol. 178, 471-476. doi:10.1007/s00203-002-0477-4.
    • (2002) Arch. Microbiol. , vol.178 , pp. 471-476
    • Hommes, N.G.1    Sayavedra-Soto, L.A.2    Arp, D.J.3
  • 22
    • 0029090696 scopus 로고
    • Effects of ammonia on the de novo synthesis of polypeptides in cells of Nitrosomonas europaea denied ammonia as an energy source
    • Hyman, M. R., and Arp, D. J. (1995). Effects of ammonia on the de novo synthesis of polypeptides in cells of Nitrosomonas europaea denied ammonia as an energy source. J. Bacteriol. 177, 4974-4979.
    • (1995) J. Bacteriol. , vol.177 , pp. 4974-4979
    • Hyman, M.R.1    Arp, D.J.2
  • 23
    • 84863760462 scopus 로고    scopus 로고
    • Effects of nitrogen dioxide and anoxia on global gene and protein expression in long-term continuous cultures of Nitrosomonas eutropha C91
    • doi:10.1128/AEM.00668-12
    • Kartal, B., Wessels, H., van der Biezen, E., Francoijs, K. J., Jetten, M. S. M., Klotz, M. G., et al. (2012). Effects of nitrogen dioxide and anoxia on global gene and protein expression in long-term continuous cultures of Nitrosomonas eutropha C91. Appl. Environ. Microbiol. 78, 4788-4794. doi:10.1128/AEM.00668-12.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 4788-4794
    • Kartal, B.1    Wessels, H.2    van der Biezen, E.3    Francoijs, K.J.4    Jetten, M.S.M.5    Klotz, M.G.6
  • 24
    • 83355166271 scopus 로고    scopus 로고
    • The Wolinella succinogenes mcc gene cluster encodes an unconventional respiratory sulfite reduction system
    • doi:10.1111/j.1365-2958.2011.07906.x
    • Kern, M., Klotz, M. G., and Simon, J. (2011). The Wolinella succinogenes mcc gene cluster encodes an unconventional respiratory sulfite reduction system. Mol. Microbiol. 82, 1515-1530. doi:10.1111/j.1365-2958.2011.07906.x.
    • (2011) Mol. Microbiol. , vol.82 , pp. 1515-1530
    • Kern, M.1    Klotz, M.G.2    Simon, J.3
  • 25
    • 45749090074 scopus 로고    scopus 로고
    • Membrane tetraheme cytochrome cm552 of the ammonia-oxidizing Nitrosomonas europaea:a ubiquinone reductase
    • doi:10.1021/bi8001264
    • Kim, H. J., Zatsman, A., Upadhyay, A. K., Whittaker, M., Bergmann, D., Hendrich, M. P., et al. (2008). Membrane tetraheme cytochrome cm552 of the ammonia-oxidizing Nitrosomonas europaea:a ubiquinone reductase. Biochemistry 47, 6539-6551. doi:10.1021/bi8001264.
    • (2008) Biochemistry , vol.47 , pp. 6539-6551
    • Kim, H.J.1    Zatsman, A.2    Upadhyay, A.K.3    Whittaker, M.4    Bergmann, D.5    Hendrich, M.P.6
  • 26
    • 33748762204 scopus 로고    scopus 로고
    • Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707
    • doi:10.1128/AEM.00463-06
    • Klotz, M. G., Arp, D. J., Chain, P. S., El-Sheikh, A. F., Hauser, L. J., Hommes, N. G., et al. (2006). Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707. Appl. Environ. Microbiol. 72, 6299-6315. doi:10.1128/AEM.00463-06.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6299-6315
    • Klotz, M.G.1    Arp, D.J.2    Chain, P.S.3    El-Sheikh, A.F.4    Hauser, L.J.5    Hommes, N.G.6
  • 27
    • 52949085766 scopus 로고    scopus 로고
    • Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria
    • doi:10.1111/j.1462-2920.2008.01733.x
    • Klotz, M. G., Schmid, M. C., Strous, M., Op Den Camp, H. J., Jetten, M. S., and Hooper, A. B. (2008). Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria. Environ. Microbiol. 10, 3150-3163. doi:10.1111/j.1462-2920.2008.01733.x.
    • (2008) Environ. Microbiol. , vol.10 , pp. 3150-3163
    • Klotz, M.G.1    Schmid, M.C.2    Strous, M.3    Op Den Camp, H.J.4    Jetten, M.S.5    Hooper, A.B.6
  • 28
    • 37249025200 scopus 로고    scopus 로고
    • Nitrifier genomics and evolution of the nitrogen cycle
    • doi:10.1111/j.1574-6968.2007.00970.x
    • Klotz, M. G., and Stein, L. Y. (2008). Nitrifier genomics and evolution of the nitrogen cycle. FEMS Microbiol. Lett. 278, 146-156. doi:10.1111/j.1574-6968.2007.00970.x.
    • (2008) FEMS Microbiol. Lett. , vol.278 , pp. 146-156
    • Klotz, M.G.1    Stein, L.Y.2
  • 29
    • 78650954125 scopus 로고    scopus 로고
    • Genomics of ammonia-oxidizing bacteria and insights to their evolution
    • eds B. B. Ward, D. J. Arp, and M. G. Klotz (Washington, DC:ASM Press)
    • Klotz, M. G., and Stein, L. Y. (2011). "Genomics of ammonia-oxidizing bacteria and insights to their evolution," in Nitrification, eds B. B. Ward, D. J. Arp, and M. G. Klotz (Washington, DC:ASM Press), 57-93.
    • (2011) Nitrification , pp. 57-93
    • Klotz, M.G.1    Stein, L.Y.2
  • 30
    • 13544275091 scopus 로고    scopus 로고
    • Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California
    • doi:10.1128/AEM.71.2.697-705.2005
    • O'Mullan, G. D., and Ward, B. B. (2005). Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California. Appl. Environ. Microbiol. 71, 697-705. doi:10.1128/AEM.71.2.697-705.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 697-705
    • O'Mullan, G.D.1    Ward, B.B.2
  • 31
    • 52949107741 scopus 로고    scopus 로고
    • Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath
    • doi:10.1038/ismej.2008.71
    • Poret-Peterson, A. T., Graham, J. E., Gulledge, J., and Klotz, M. G. (2008). Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath. ISME J. 2, 1213-1220. doi:10.1038/ismej.2008.71.
    • (2008) ISME J. , vol.2 , pp. 1213-1220
    • Poret-Peterson, A.T.1    Graham, J.E.2    Gulledge, J.3    Klotz, M.G.4
  • 32
    • 79955973823 scopus 로고    scopus 로고
    • The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family
    • doi:10.1111/j.1758-2229.2010.00239.x
    • Sayavedra-Soto, L. A., Hamamura, N., Liu, C.-W., Kimbrel, J. A., Chang, J. H., and Arp, D. J. (2011). The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family. Environ. Microbiol. Rep. 3, 1758-2229. doi:10.1111/j.1758-2229.2010.00239.x.
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 1758-2229
    • Sayavedra-Soto, L.A.1    Hamamura, N.2    Liu, C.-W.3    Kimbrel, J.A.4    Chang, J.H.5    Arp, D.J.6
  • 33
    • 0028047483 scopus 로고
    • Characterization of the gene encoding hydroxylamine oxidoreductase in Nitrosomonas europaea
    • Sayavedra-Soto, L. A., Hommes, N. G., and Arp, D. J. (1994). Characterization of the gene encoding hydroxylamine oxidoreductase in Nitrosomonas europaea. J. Bacteriol. 176, 504-510.
    • (1994) J. Bacteriol. , vol.176 , pp. 504-510
    • Sayavedra-Soto, L.A.1    Hommes, N.G.2    Arp, D.J.3
  • 34
    • 0029988831 scopus 로고    scopus 로고
    • Induction of ammonia monooxygenase and hydroxylamine oxidoreductase mRNAs by ammonium in Nitrosomonas europaea
    • doi:10.1046/j.1365-2958.1996.5391062.x
    • Sayavedra-Soto, L. A., Hommes, N. G., Russell, S. A., and Arp, D. J. (1996). Induction of ammonia monooxygenase and hydroxylamine oxidoreductase mRNAs by ammonium in Nitrosomonas europaea. Mol. Microbiol. 20, 541-548. doi:10.1046/j.1365-2958.1996.5391062.x.
    • (1996) Mol. Microbiol. , vol.20 , pp. 541-548
    • Sayavedra-Soto, L.A.1    Hommes, N.G.2    Russell, S.A.3    Arp, D.J.4
  • 35
    • 84871720360 scopus 로고    scopus 로고
    • Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations
    • doi:10.1016/j.bbabio.2012.07.005
    • Simon, J., and Klotz, M. G. (2013). Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations. Bioch. Biophys. Acta. 1827, 114-132. doi:10.1016/j.bbabio.2012.07.005.
    • (2013) Bioch. Biophys. Acta. , vol.1827 , pp. 114-132
    • Simon, J.1    Klotz, M.G.2
  • 36
    • 81855186714 scopus 로고    scopus 로고
    • Heterotrophic nitrification and nitrifier denitrification
    • eds B. B. Ward, D. J. Arp, and M. G. Klotz (Washington, DC:ASM Press)
    • Stein, L. Y. (2011). "Heterotrophic nitrification and nitrifier denitrification," in Nitrification, eds B. B. Ward, D. J. Arp, and M. G. Klotz (Washington, DC:ASM Press), 95-114.
    • (2011) Nitrification , pp. 95-114
    • Stein, L.Y.1
  • 37
    • 0030707707 scopus 로고    scopus 로고
    • Regulation of the synthesis and activity of ammonia monooxygenase in Nitrosomonas europaea by altering pH to affect NH3 availability
    • Stein, L. Y., Arp, D. J., and Hyman, M. R. (1997). Regulation of the synthesis and activity of ammonia monooxygenase in Nitrosomonas europaea by altering pH to affect NH3 availability. Appl. Environ. Microbiol. 63, 4588-4592.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4588-4592
    • Stein, L.Y.1    Arp, D.J.2    Hyman, M.R.3
  • 38
    • 81855220893 scopus 로고    scopus 로고
    • Nitrifying and denitrifying pathways of methanotrophic bacteria
    • doi:10.1042/BST20110712
    • Stein, L. Y., and Klotz, M. G. (2011). Nitrifying and denitrifying pathways of methanotrophic bacteria. Biochem. Soc. Trans. 39, 1826-1831. doi:10.1042/BST20110712.
    • (2011) Biochem. Soc. Trans. , vol.39 , pp. 1826-1831
    • Stein, L.Y.1    Klotz, M.G.2
  • 39
    • 79953747793 scopus 로고    scopus 로고
    • A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs
    • doi:10.1111/j.1758-2229.2010.00192.x
    • Tavormina, P. L., Orphan, V. J., Kalyuzhnaya, M. G., Jetten, M. S. M., and Klotz, M. G. (2011). A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environ. Microbiol. Rep. 3, 91-100. doi:10.1111/j.1758-2229.2010.00192.x.
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 91-100
    • Tavormina, P.L.1    Orphan, V.J.2    Kalyuzhnaya, M.G.3    Jetten, M.S.M.4    Klotz, M.G.5
  • 40
    • 84876796726 scopus 로고    scopus 로고
    • Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone
    • doi:10.1111/1758-2229.12025
    • Tavormina, P. L., Ussler, W., Steele, J. A., Connon, S. A., Klotz, M. G., and Orphan, V. J. (2013). Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone. Environ. Microbiol. Rep. 5, 414-423. doi:10.1111/1758-2229.12025.
    • (2013) Environ. Microbiol. Rep. , vol.5 , pp. 414-423
    • Tavormina, P.L.1    Ussler, W.2    Steele, J.A.3    Connon, S.A.4    Klotz, M.G.5    Orphan, V.J.6
  • 41
    • 33645462692 scopus 로고    scopus 로고
    • NO reductase activity of the tetraheme cytochrome c554 of Nitrosomonas europaea
    • doi:10.1021/ja055183+
    • Upadhyay, A. K., Hooper, A. B., and Hendrich, M. P. (2006). NO reductase activity of the tetraheme cytochrome c554 of Nitrosomonas europaea. J. Am. Chem. Soc. 128, 4330-4337. doi:10.1021/ja055183+.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 4330-4337
    • Upadhyay, A.K.1    Hooper, A.B.2    Hendrich, M.P.3
  • 42
    • 77952739182 scopus 로고    scopus 로고
    • Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
    • doi:10.1073/pnas.0913533107
    • Walker, C. B., de La Torre, J. R., Klotz, M. G., Urakawa, H., Pinel, N., Arp, D. J., et al. (2010). Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc. Natl. Acad. Sci. U.S.A. 107, 8818-8823. doi:10.1073/pnas.0913533107.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 8818-8823
    • Walker, C.B.1    de La Torre, J.R.2    Klotz, M.G.3    Urakawa, H.4    Pinel, N.5    Arp, D.J.6
  • 43
    • 33645008161 scopus 로고    scopus 로고
    • Transcript profiles of Nitrosomonas europaea during growth and upon deprivation of ammonia and carbonate
    • doi:10.1111/j.1574-6968.2006.00152.x
    • Wei, X., Yan, T., Hommes, N. G., Liu, X., Wu, L., McAlvin, C., et al. (2006). Transcript profiles of Nitrosomonas europaea during growth and upon deprivation of ammonia and carbonate. FEMS Microbiol. Lett. 257, 76-83. doi:10.1111/j.1574-6968.2006.00152.x.
    • (2006) FEMS Microbiol. Lett. , vol.257 , pp. 76-83
    • Wei, X.1    Yan, T.2    Hommes, N.G.3    Liu, X.4    Wu, L.5    McAlvin, C.6


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