-
1
-
-
25144469781
-
Structure and sequence conservation of hao cluster genes of autotrophic ammonia-oxidizing bacteria: evidence for their evolutionary history
-
doi: 10.1128/AEM.71.9.5371-5382.2005
-
Bergmann, D. J., Hooper, A. B., and Klotz, M. G. (2005). Structure and sequence conservation of hao cluster genes of autotrophic ammonia-oxidizing bacteria: evidence for their evolutionary history. Appl. Environ. Microbiol. 71, 5371-5382. doi: 10.1128/AEM.71.9.5371-5382.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 5371-5382
-
-
Bergmann, D.J.1
Hooper, A.B.2
Klotz, M.G.3
-
2
-
-
33847752606
-
New developments in the marine nitrogen cycle
-
doi: 10.1021/cr050377t
-
Brandes, J. A., Devol, A. H., and Deutsch, C. (2007). New developments in the marine nitrogen cycle. Chem. Rev. 107, 577-589. doi: 10.1021/cr050377t
-
(2007)
Chem. Rev.
, vol.107
, pp. 577-589
-
-
Brandes, J.A.1
Devol, A.H.2
Deutsch, C.3
-
3
-
-
8544231440
-
Hydroxylamine assimilation by Rhodobacter capsulatus E1F1- Requirement of the hcp gene (hybrid cluster protein) located in the nitrate assimilation nas gene region for hydroxylamine reduction
-
doi: 10.1074/jbc. M404417200
-
Cabello, P., Pino, C., Olmo-Mira, M. F., Castillo, F., Roldán, M. D., and Moreno-Vivián, C. (2004). Hydroxylamine assimilation by Rhodobacter capsulatus E1F1- Requirement of the hcp gene (hybrid cluster protein) located in the nitrate assimilation nas gene region for hydroxylamine reduction. J. Biol. Chem. 279, 45485-45494. doi: 10.1074/jbc. M404417200
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 45485-45494
-
-
Cabello, P.1
Pino, C.2
Olmo-Mira, M.F.3
Castillo, F.4
Roldán, M.D.5
Moreno-Vivián, C.6
-
4
-
-
33646827488
-
The versatile epsilon-proteobacteria: key players in sulphidic habitats
-
doi: 10.1038/nrmicro1414
-
Campbell, B. J., Engel, A. S., Porter, M. L., and Takai, K. (2006). The versatile epsilon-proteobacteria: key players in sulphidic habitats. Nat. Rev. Microbiol. 4, 458-468. doi: 10.1038/nrmicro1414
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 458-468
-
-
Campbell, B.J.1
Engel, A.S.2
Porter, M.L.3
Takai, K.4
-
5
-
-
0035489758
-
Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents
-
doi: 10.1128/AEM.67.10.4566-4572.2001
-
Campbell, B. J., Jeanthon, C., Kostka, J. E., Luther, G. W., and Cary, S. C. (2001). Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl. Environ. Microbiol. 67, 4566-4572. doi: 10.1128/AEM.67.10.4566-4572.2001
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4566-4572
-
-
Campbell, B.J.1
Jeanthon, C.2
Kostka, J.E.3
Luther, G.W.4
Cary, S.C.5
-
6
-
-
61449257456
-
Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola
-
doi: 10.1371/journal.pgen.1000362
-
Campbell, B. J., Smith, J. L., Hanson, T. E., Klotz, M. G., Stein, L. Y., Lee, C. K., et al. (2009). Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet. 5:e1000362. doi: 10.1371/journal.pgen.1000362
-
(2009)
PLoS Genet.
, vol.5
-
-
Campbell, B.J.1
Smith, J.L.2
Hanson, T.E.3
Klotz, M.G.4
Stein, L.Y.5
Lee, C.K.6
-
7
-
-
79960619274
-
Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria
-
doi: 10.1111/j.1574-6968.2011.02340.x
-
Campbell, M. A., Nyerges, G., Kozlowski, J., Poret-Peterson, A. T., Stein, L. Y., and Klotz, M. G. (2011). Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria. FEMS Microbiol. Lett. 322, 82-89. doi: 10.1111/j.1574-6968.2011.02340.x
-
(2011)
FEMS Microbiol. Lett.
, vol.322
, pp. 82-89
-
-
Campbell, M.A.1
Nyerges, G.2
Kozlowski, J.3
Poret-Peterson, A.T.4
Stein, L.Y.5
Klotz, M.G.6
-
8
-
-
33847129611
-
Cytochromes P460 and c'-beta; A new family of high-spin cytochromes c
-
doi: 10.1016/j.febslet.2007.01.068
-
Elmore, B. O., Bergmann, D. J., Klotz, M. G., and Hooper, A. B. (2007). Cytochromes P460 and c'-beta; A new family of high-spin cytochromes c. FEBS Lett. 581, 911-916. doi: 10.1016/j.febslet.2007.01.068
-
(2007)
FEBS Lett.
, vol.581
, pp. 911-916
-
-
Elmore, B.O.1
Bergmann, D.J.2
Klotz, M.G.3
Hooper, A.B.4
-
9
-
-
47249141583
-
Electrons, life and the evolution of Earth's oxygen cycle
-
doi: 10.1098/rstb.2008.0054
-
Falkowski, P. G., and Godfrey, L. V. (2008). Electrons, life and the evolution of Earth's oxygen cycle. Philos. Trans. R. Soc. Lond. B Biol. Sci. 363, 2705-2716. doi: 10.1098/rstb.2008.0054
-
(2008)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.363
, pp. 2705-2716
-
-
Falkowski, P.G.1
Godfrey, L.V.2
-
10
-
-
0000426139
-
Spectrophotometric method for determining hydroxylamine reductase activity in higher plants
-
doi: 10.1021/ac60106a054
-
Frear, D. S., and Burrell, R. C. (1955). Spectrophotometric method for determining hydroxylamine reductase activity in higher plants. Anal. Chem. 27, 1664-1665. doi: 10.1021/ac60106a054
-
(1955)
Anal. Chem.
, vol.27
, pp. 1664-1665
-
-
Frear, D.S.1
Burrell, R.C.2
-
11
-
-
34247862355
-
Simultaneous HPLC analysis of biogenic amines, amino acids, and ammonium ion as aminoenone derivatives in wine and beer samples
-
doi: 10.1021/jf062820m
-
Gómez-Alonso, S., Hermosín-Gutiérrez, I., and García-Romero, E. (2007). Simultaneous HPLC analysis of biogenic amines, amino acids, and ammonium ion as aminoenone derivatives in wine and beer samples. J. Agric. Food Chem. 55, 608-613. doi: 10.1021/jf062820m
-
(2007)
J. Agric. Food Chem.
, vol.55
, pp. 608-613
-
-
Gómez-Alonso, S.1
Hermosín-Gutiérrez, I.2
García-Romero, E.3
-
12
-
-
76149098783
-
Enzymatic properties of the ferredoxin-dependent nitrite reductase from Chlamydomonas reinhardtii. Evidence for hydroxylamine as a late intermediate in ammonia production
-
doi: 10.1007/s11120-009-9512-5
-
Hirasawa, M., Tripathy, J. N., Sommer, F., Somasundaram, R., Chung, J. S., Nestander, M., et al. (2010). Enzymatic properties of the ferredoxin-dependent nitrite reductase from Chlamydomonas reinhardtii. Evidence for hydroxylamine as a late intermediate in ammonia production. Photosynth. Res. 103, 67-77. doi: 10.1007/s11120-009-9512-5
-
(2010)
Photosynth. Res.
, vol.103
, pp. 67-77
-
-
Hirasawa, M.1
Tripathy, J.N.2
Sommer, F.3
Somasundaram, R.4
Chung, J.S.5
Nestander, M.6
-
13
-
-
70350520211
-
Biochemistry and molecular biology of anammox bacteria
-
doi: 10.1080/10409230902722783
-
Jetten, M. S., Niftrik, L. V., Strous, M., Kartal, B., Keltjens, J. T., and Op den Camp, H. J. (2009). Biochemistry and molecular biology of anammox bacteria. Crit. Rev. Biochem. Mol. Biol. 44, 1-20. doi: 10.1080/10409230902722783
-
(2009)
Crit. Rev. Biochem. Mol. Biol.
, vol.44
, pp. 1-20
-
-
Jetten, M.S.1
Niftrik, L.V.2
Strous, M.3
Kartal, B.4
Keltjens, J.T.5
Op den Camp, H.J.6
-
14
-
-
66349117533
-
Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria
-
doi: 10.1016/j.bbabio.2008.12.010
-
Kern, M., and Simon, J. (2009). Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria. Biochim. Biophys. Acta 1787, 646-656. doi: 10.1016/j.bbabio.2008.12.010
-
(2009)
Biochim. Biophys. Acta
, vol.1787
, pp. 646-656
-
-
Kern, M.1
Simon, J.2
-
15
-
-
83355166271
-
The Wolinella succinogenes mcc gene cluster encodes an unconventional respiratory sulfite reduction system
-
doi: 10.1111/j.1365-2958.2011.07906.x
-
Kern, M., Klotz, M. G., and Simon, J. (2011). The Wolinella succinogenes mcc gene cluster encodes an unconventional respiratory sulfite reduction system. Mol. Microbiol. 82, 1515-1530. doi: 10.1111/j.1365-2958.2011.07906.x
-
(2011)
Mol. Microbiol.
, vol.82
, pp. 1515-1530
-
-
Kern, M.1
Klotz, M.G.2
Simon, J.3
-
16
-
-
33748762204
-
Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707 Appl
-
doi: 10.1128/AEM.00463-06
-
Klotz, M. G., Arp, D. J., Chain, P. S., El-Sheikh, A. F., Hauser, L. J., Hommes, N. G., et al. (2006). Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707 Appl. Environ. Microbiol. 72, 6299-6315. doi: 10.1128/AEM.00463-06
-
(2006)
Environ. Microbiol.
, vol.72
, pp. 6299-6315
-
-
Klotz, M.G.1
Arp, D.J.2
Chain, P.S.3
El-Sheikh, A.F.4
Hauser, L.J.5
Hommes, N.G.6
-
17
-
-
37249025200
-
Nitrifier genomics and evolution of the nitrogen cycle
-
doi: 10.1111/j.1574-6968.2007.00970.x
-
Klotz, M. G., and Stein, L. Y. (2008). Nitrifier genomics and evolution of the nitrogen cycle. FEMS Microbiol. Lett. 278, 146-156. doi: 10.1111/j.1574-6968.2007.00970.x
-
(2008)
FEMS Microbiol. Lett.
, vol.278
, pp. 146-156
-
-
Klotz, M.G.1
Stein, L.Y.2
-
18
-
-
78650954125
-
"Genomics of ammonia-oxidizing bacteria and insights to their evolution
-
Washington, DC: ASM Press, ISBN: 978-1-55581-481-6
-
Klotz, M. G., and Stein, L. Y. (2010). "Genomics of ammonia-oxidizing bacteria and insights to their evolution," in Nitrification, eds B. B. Ward, D. J. Arp, and M. G. Klotz (Washington, DC: ASM Press), 57-93. ISBN: 978-1-55581-481-6.
-
(2010)
Nitrification, eds B. B. Ward, D. J. Arp, and M. G. Klotz
, pp. 57-93
-
-
Klotz, M.G.1
Stein, L.Y.2
-
19
-
-
77957277232
-
Enzymatic interconversion of ammonia and nitrite: the right tool for the job
-
doi: 10.1021/bi1006783
-
Kostera, J., McGarry, J., and Pacheco, A. A. (2010). Enzymatic interconversion of ammonia and nitrite: the right tool for the job. Biochemistry 49, 8546-8553. doi: 10.1021/bi1006783
-
(2010)
Biochemistry
, vol.49
, pp. 8546-8553
-
-
Kostera, J.1
McGarry, J.2
Pacheco, A.A.3
-
20
-
-
4143146335
-
Reactions of spinach nitrite reductase with its substrate, nitrite, and a putative intermediate, hydroxylamine
-
doi: 10.1021/bi048826r
-
Kuznetsova, S., Knaff, D. B., Hirasawa, M., Sétif, P., and Mattioli, T. A. (2004). Reactions of spinach nitrite reductase with its substrate, nitrite, and a putative intermediate, hydroxylamine. Biochemistry 43, 10765-10774. doi: 10.1021/bi048826r
-
(2004)
Biochemistry
, vol.43
, pp. 10765-10774
-
-
Kuznetsova, S.1
Knaff, D.B.2
Hirasawa, M.3
Sétif, P.4
Mattioli, T.A.5
-
21
-
-
0034937657
-
Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell
-
doi: 10.1007/s002030100280
-
Lindsay, M. R., Webb, R. I., Strous, M., Jetten, M. S., Butler, M. K., Forde, R. J., et al. (2001). Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell. Arch. Microbiol. 175, 413-429. doi: 10.1007/s002030100280
-
(2001)
Arch. Microbiol.
, vol.175
, pp. 413-429
-
-
Lindsay, M.R.1
Webb, R.I.2
Strous, M.3
Jetten, M.S.4
Butler, M.K.5
Forde, R.J.6
-
22
-
-
84893177994
-
The production of hydroxylamine by the reduction of nitrates and nitrites by various pure cultures of bacteria
-
Lindsey, G. A., and Rhines, C. M. (1932). The production of hydroxylamine by the reduction of nitrates and nitrites by various pure cultures of bacteria. J. Bacteriol. 24, 489-492.
-
(1932)
J. Bacteriol.
, vol.24
, pp. 489-492
-
-
Lindsey, G.A.1
Rhines, C.M.2
-
23
-
-
0344222215
-
Determination of bacterial cell dry mass by transmission electron microscopy and densitometric image analysis
-
Loferer-Krossbacher, M., Klima, J., and Psenner, R. (1998). Determination of bacterial cell dry mass by transmission electron microscopy and densitometric image analysis. Appl. Environ. Microbiol. 64, 688-694.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 688-694
-
-
Loferer-Krossbacher, M.1
Klima, J.2
Psenner, R.3
-
24
-
-
32544436628
-
The assimilatory nitrate reduction system of the phototrophic bacterium Rhodobacter capsulatus E1F1
-
doi: 10.1042/BST0340127
-
Pino, C., Olmo-Mira, F., Cabello, P., Martínez-Luque, M., Castillo, F., Roldán, M. D., et al. (2006). The assimilatory nitrate reduction system of the phototrophic bacterium Rhodobacter capsulatus E1F1. Biochem. Soc. Trans. 34, 127-129. doi: 10.1042/BST0340127
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 127-129
-
-
Pino, C.1
Olmo-Mira, F.2
Cabello, P.3
Martínez-Luque, M.4
Castillo, F.5
Roldán, M.D.6
-
25
-
-
0002661170
-
The reduction of nitrites to hydroxylamine by sulfites
-
doi: 10.1021/ja01342a019
-
Rollefson, G. K., and Oldershaw, C. F. (1932). The reduction of nitrites to hydroxylamine by sulfites. J. Am. Chem. Soc. 54, 977-979. doi: 10.1021/ja01342a019
-
(1932)
J. Am. Chem. Soc.
, vol.54
, pp. 977-979
-
-
Rollefson, G.K.1
Oldershaw, C.F.2
-
26
-
-
2942592159
-
Ammonium and hydroxylamine uptake and accumulation in Nitrosomonas
-
doi: 10.1099/mic.0.26719-0
-
Schmidt, I., Look, C., Bock, E., and Jetten, M. S. M. (2004). Ammonium and hydroxylamine uptake and accumulation in Nitrosomonas. Microbiology 150, 1405-1412. doi: 10.1099/mic.0.26719-0
-
(2004)
Microbiology
, vol.150
, pp. 1405-1412
-
-
Schmidt, I.1
Look, C.2
Bock, E.3
Jetten, M.S.M.4
-
27
-
-
0034831352
-
A comparison of the TLC-densitometry and HPLC method for the determination of biogenic amines in fish and fishery products
-
doi: 10.1016/S0308-8146(01)00173-X
-
Shakila, R. J., Vasundhara, T. S., and Kumudavally, K. V. (2001). A comparison of the TLC-densitometry and HPLC method for the determination of biogenic amines in fish and fishery products. Food Chem. 75, 255-259. doi: 10.1016/S0308-8146(01)00173-X
-
(2001)
Food Chem.
, vol.75
, pp. 255-259
-
-
Shakila, R.J.1
Vasundhara, T.S.2
Kumudavally, K.V.3
-
28
-
-
39649088960
-
Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans
-
doi: 10.1128/AEM.01844-07
-
Sievert, S. M., Scott, K. M., Klotz, M. G., Chain, P. S., Hauser, L. J., Hemp, J., et al. (2008). Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl. Environ. Microbiol. 74, 1145-1156. doi: 10.1128/AEM.01844-07
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 1145-1156
-
-
Sievert, S.M.1
Scott, K.M.2
Klotz, M.G.3
Chain, P.S.4
Hauser, L.J.5
Hemp, J.6
-
29
-
-
84871720360
-
Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations
-
doi: 10.1016/j.bbabio.2012.07.005
-
Simon, J., and Klotz, M. G. (2013). Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations. Biochim. Biophys. Acta 1827, 114-135. doi: 10.1016/j.bbabio.2012.07.005
-
(2013)
Biochim. Biophys. Acta
, vol.1827
, pp. 114-135
-
-
Simon, J.1
Klotz, M.G.2
-
30
-
-
52449120604
-
Nautilia profundicola sp. nov., a thermophilic, sulfur-reducing epsilonproteobacterium from deep-sea hydrothermal vents
-
doi: 10.1099/ijs.0.65435-0
-
Smith, J. L., Campbell, B. J., Hanson, T. E., Zhang, C. L., and Cary, S. C. (2008). Nautilia profundicola sp. nov., a thermophilic, sulfur-reducing epsilonproteobacterium from deep-sea hydrothermal vents. Int. J. Syst. Appl. Microbiol. 58, 1598-1602. doi: 10.1099/ijs.0.65435-0
-
(2008)
Int. J. Syst. Appl. Microbiol.
, vol.58
, pp. 1598-1602
-
-
Smith, J.L.1
Campbell, B.J.2
Hanson, T.E.3
Zhang, C.L.4
Cary, S.C.5
-
31
-
-
0017343370
-
Energy conservation in chemotrophic anaerobic bacteria
-
Thauer, R. K., Jungermann, K., and Decker, K. (1977). Energy conservation in chemotrophic anaerobic bacteria. Bacteriol. Rev. 41, 100-180.
-
(1977)
Bacteriol. Rev.
, vol.41
, pp. 100-180
-
-
Thauer, R.K.1
Jungermann, K.2
Decker, K.3
-
32
-
-
84872560122
-
Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea
-
doi: 10.1073/pnas.1214272110
-
Vajrala, N., Martens-Habbena, W., Sayavedra-Soto, L. A., Schauer, A., Bottomley, P. J., Stahl, D. A., et al. (2013). Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea. Proc. Natl. Acad. Sci. U.S.A. 110, 1006-1011. doi: 10.1073/pnas.1214272110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 1006-1011
-
-
Vajrala, N.1
Martens-Habbena, W.2
Sayavedra-Soto, L.A.3
Schauer, A.4
Bottomley, P.J.5
Stahl, D.A.6
-
33
-
-
47749095642
-
Response of anaerobic ammonium-oxidizing bacteria to hydroxylamine
-
doi: 10.1128/AEM.00042-08
-
van der Star, W. R., van de Graaf, M. J., Kartal, B., Picioreanu, C., Jetten, M. S., and van Loosdrecht, M. C. (2008). Response of anaerobic ammonium-oxidizing bacteria to hydroxylamine. Appl. Environ. Microbiol. 74, 4417-4426. doi: 10.1128/AEM.00042-08
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 4417-4426
-
-
van der Star, W.R.1
van de Graaf, M.J.2
Kartal, B.3
Picioreanu, C.4
Jetten, M.S.5
van Loosdrecht, M.C.6
-
34
-
-
0036275150
-
Elemental composition (C, N, P) and cell volume of exponentially growing and nutrient-limited bacterioplankton
-
doi: 10.1128/AEM.68.6.2965-2971.2002
-
Vrede, K., Heldal, M., Norland, S., and Bratbak, G. (2002). Elemental composition (C, N, P) and cell volume of exponentially growing and nutrient-limited bacterioplankton. Appl. Environ. Microbiol. 68, 2965-2971. doi: 10.1128/AEM.68.6.2965-2971.2002
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2965-2971
-
-
Vrede, K.1
Heldal, M.2
Norland, S.3
Bratbak, G.4
|