Genetic diversity in three endangered pitcher plant species (Sarracenia; Sarraceniaceae) is lower than widespread congeners

American Journal of Botany

Volumn 100, Issue 10, 2013, Pages 2092-2101

  Steven Furches, M ^a   Small, Randall L ^b   Furches, Anna ^a  

^a LINCOLN MEMORIAL UNIVERSITY   (United States)

^b UNIVERSITY OF TENNESSEE   (United States)

Author keywords

3'rps16 5'TrnK; atpi atpH; Endangered; Endemic; Microsatellites; Noncoding chloroplast; Sarracenia; Sarraceniaceae; trnS trnG

Indexed keywords

ANTHROPOGENIC EFFECT; ENDANGERED SPECIES; ENDEMIC SPECIES; EXTINCTION RISK; GENETIC MARKER; GENETIC VARIATION; HABITAT FRAGMENTATION; HABITAT LOSS; POPULATION SIZE;

CHLOROPLAST DNA; MICROSATELLITE DNA; SPACER DNA;

3′RPS16-5′TRNK; ARTICLE; ATPI-ATPH; ENDANGERED; ENDANGERED SPECIES; ENDEMIC; GENE LOCUS; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; MICROSATELLITES; NONCODING CHLOROPLAST; PHYLOGENY; SARRACENIA; SARRACENIACEAE; SPECIES DIFFERENCE; TRNS-TRNG; UNITED STATES;

3′RPS16-5′TRNK; ATPI-ATPH; ENDANGERED; ENDEMIC; MICROSATELLITES; NONCODING CHLOROPLAST; SARRACENIA; SARRACENIACEAE; TRNS-TRNG;

ALABAMA; DNA, CHLOROPLAST; DNA, INTERGENIC; ENDANGERED SPECIES; GENETIC LOCI; GENETIC VARIATION; HAPLOTYPES; MICROSATELLITE REPEATS; PHYLOGENY; SARRACENIACEAE; SPECIES SPECIFICITY;

EID: 84885362536     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1300037     Document Type: Article

References (62)

1. BELL, C. 1949. A cytotaxonomic study of the Sarraceniaceae of North America. Journal of the Elisha Mitchell Scientific Society 65: 137-166.
2. BRADY, S. J., and C. H. FLATHER. 1994. Changes in wetlands on nonfederal rural land of the conterminous United States from 1982 to 1987. Environmental Management 18: 693-705.
3. BREWER, J. S. 2001. A demographic analysis of fire-stimulated seedling establishment of Sarracenia alata (Sarraceniaceae). American Journal of Botany 88: 1250-1257.
4. CASE, F., and R. CASE. 1973. Sarracenia alabamensis, a newly recognized species from central Alabama. Rhodora 76: 650-665.
5. CASE, F., and R. CASE. 1976. The Sarracenia rubra complex. Rhodora 78: 270-325.
6. CLEMENT, M., D. POSADA, and K. A. CRANDALL. 2000. TCS: A computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1659.
7. CRAWFORD, N. G. 2010. SMOGD: Software for the Measurement of Genetic Diversity. Molecular Ecology Resources 10: 556-557.
8. DELCOURT, H., and P. DELCOURT. 2000. Eastern deciduous forests. In M. G. Barbour and W. D. Billings [eds.], North American terrestrial vegetation, 357-396. Cambridge University Press, Cambridge, UK.
9. ELLSTRAND, N., and D. ELAM. 1993. Population genetic consequences of small population size: Implications for conservation. Annual Review of Ecology and Systematics 23: 237-261.
10. EVANNO, G., S. REGNAUT, and J. G OUDET. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology 14: 2611-2620.
11. FOLKERTS, G. W. 1982. The Gulf Coast pitcher plant bogs. American Scientist 70: 260-267.
12. FRANKHAM, R., J. BALLOU, and D. BRISCOE. 2002. Introduction to conservation genetics. Cambridge University Press, Cambridge, UK.
13. GITZENDANNER, M., and P. SOLTIS. 2000. Patterns of genetic variation in rare and widespread plant congeners. American Journal of Botany 87: 783-792.
14. GODT, M. J. W., and J. L. HAMRICK. 1996. Genetic structure of two endangered pitcher plants, Sarracenia jonesii and Sarracenia oreophila. American Journal of Botany 83: 1016-1023.
15. GODT, M. J. W., and J. L. HAMRICK. 1998. Allozyme diversity in the endangered pitcher plant Sarracenia rubra ssp alabamensis (Sarraceniaceae) and its close relative S. rubra ssp rubra. American Journal of Botany 85: 802-810.
16. GOUDET, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices. Computer program available at http://www2.unil.ch/popgen/softwares/fstat.htm.
17. GOUDET, J., M. R AYMOND, T. DE MEEÜS, and F. ROUSSET. 1996. Testing differentiation in diploid populations. Genetics 144: 1933-1940.
18. GUTZWILLER, K. J., and C. H. FLATHER. 2011. Wetland features and landscape context predict the risk of wetland habitat loss. Ecological Applications 21: 968-982.
19. HAMRICK, J. L., and M. J. W. GODT. 1996. Effects of life history traits on genetic diversity in plant species. Philosophical Transactions of the Royal Society of London, B, Biological Sciences 351: 1291-1298.
20. HARPER, R. 1918. The American pitcher plants. Journal of the Elisha Mitchell Scientific Society 34: 110-125.
21. HERRINGTON, A. 2004. Southeast leads U.S. in wetlands losses. Chattanooga Times Free Press,12 January 2004.
22. HOLSINGER, K., and L. GOTTLIEB. 1991. Conservation of rare and endangered plants: Principles and concepts. In K. Holsinger and D. Falk [eds.], Genetics and conservation of rare plants, 195-208. Oxford University Press, New York, New York, USA.
23. HUELSENBECK, J. P., and F. RONQUIST. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
24. HUENNEKE, L. 1991. Ecological implications of genetic variation in plant populations. In K. Holsinger and D. Falk [eds.], Genetics and conservation of rare plants, 31-44. Oxford University Press, New York, New York, USA.
25. JENNINGS, D. E., and J. R. ROHR. 2011. A review of the conservation threats to carnivorous plants. Biological Conservation 144: 1356-1363.
26. JENSEN, J. L., A. J. BOHONAK, and S. T. KELLEY. 2005. Isolation by distance, web service. BMC Genetics 6: 13.
27. JOST, L. 2008. G ST and its relatives do not measure differentiation. Molecular Ecology 17: 4015-4026.
28. KOOPMAN, M., E. GALLAGHER, and B. CARSTENS. 2009. Isolation and characterization of nine microsatellite loci in the pale pitcher plant, Sarracenia alata. Molecular Ecology Resources 9: 1460-1466.
29. KOOPMAN, M. M., and B. C. CARSTENS. 2010. Conservation genetic inferences in the carnivorous pitcher plant Sarracenia alata (Sarraceniaceae). Conservation Genetics 11: 2027-2038.
30. LEBERG, P. L. 2002. Estimating allelic richness: Effects of sample size and bottlenecks. Molecular Ecology 11: 2445-2449.
31. LONGLEAF ALLIANCE. 2011. Longleaf Alliance-Lesson 1. Available at http://www.longleafalliance.org/lesson1.html [accessed 1 November 2011].
32. LOS ALAMOS NATIONAL LABORATORY. 2011. FindModel. Available at http://www.hiv.lanl.gov/content/sequence/findmodel/findmodel.html [accessed 1 November 2011].
33. MADDISON, W., and D. MADDISON. 2009. Mesquite: A modular system for evolutionary analysis, version 2.71. Available at http://mesquiteproject.org [accessed 1 November 2011].
34. MANDOSSIAN, A. 1965. Some aspects of the ecological life history of Sarracenia purpurea. Ph.D. dissertation, Michigan State University, Ann Arbor, Michigan, USA.
35. MCDANIEL, S. 1971. The genus Sarracenia (Sarraceniaceae). Bulletin of the Tall Timbers Research Station 9: 1-36.
36. MURDOCK, N. A. 1994. Rare and endangered plants and animals of southern Appalachian wetlands. Water, Air, and Soil Pollution 77: 385-405.
37. MURPHY, P. B., and R. S. BOYD. 1999. Population status and habitat characterization of the endangered plant, Sarracenia rubra subspecies alabamensis. Castanea 64: 101-113.
38. NEYLAND, R., and M. MERCHANT. 2006. Systematic relationships of Sarraceniaceae inferred from ribosomal DNA sequences. Madrono 53: 223-232.
39. NEEMAN, G., R. NEEMAN, and A. M. E LLISON. 2006. Limits to reproductive success in Sarracenia purpurea (Sarraceniaceae). American Journal of Botany 93: 1660-1666.
40. OCHOTERENA, H. 2009. Homology in coding and non-coding DNA sequences: A parsimony perspective. Plant Systematics and Evolution 282: 151-168.
41. OSBORNE, J. L., ET AL. 2008. Bumblebee flight distances in relation to the forage landscape. Journal of Animal Ecology 77: 406-415.
42. PEAKALL, R., and P. E. SMOUSE. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6: 288-295.
43. PLATT, W. J., G. W. EVANS, and M. M. DAVIS. 1988. Effects of fire season on flowering of forbs and shrubs in longleaf pine forests. Oecologia 76: 353-363.
44. POSADA, D. 2006. Collapse: Describing haplotypes from sequence alignments. Available at http://darwin.uvigo.es/software/collapse.html [accessed 12 November 2012].
45. POSADA, D. 2008. jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
46. PRITCHARD, J. K., M. STEPHENS, and P. DONNELLY. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
47. REID, W. 1998. Biodiversity hotspots. Trends in Ecology & Evolution 13: 275-280.
48. RICKETTS, T., and M. IMHOFF. 2003. Biodiversity, urban areas, and agriculture: Locating priority ecoregions for conservation. Conservation Ecology 8: 1.
49. ROGERS, W. L., J. M. CRUSE-SANDERS, R. DETERMANN, and R. L. MALMBERG. 2010. Development and characterization of microsatellite markers in Sarracenia L. (pitcher plant) species. Conservation Genetics Resources 2: 75-79.
50. SCHNELL, D. 1977. Infraspecific variation in Sarracenia rubra Walt.: Some observations. Castanea 42: 149-170.
51. SCHNELL, D. 1978. Systematic flower studies of Sarracenia L. Castanea 43: 211-220.
52. SCHNELL, D. 1983. Notes on the pollination of Sarracenia flava (Sarraceniaceae) in the piedmont province of North Carolina. Rhodora 85: 405-420.
53. SCHNELL, D. 2002. Carnivorous plants of the United States and Canada. Timber Press, Portland, Oregon, USA.
54. SCHUELKE, M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology 18: 233-234.
55. SHERIDAN, P. M., and D. N. KAROWE. 2000. Inbreeding, outbreeding, and heterosis in the yellow pitcher plant, Sarracenia flava (Sarraceniaceae), in Virginia. American Journal of Botany 87: 1628-1633.
56. U.S. FISH & WILDLIFE SERVICE. 1990. Mountain sweet pitcher plant recovery plan. U.S. Fish & Wildlife Service, Atlanta, Georgia, USA.
57. U.S. FISH & WILDLIFE SERVICE. 1992. Alabama canebreak pitcher plant recovery plan. U.S. Fish & Wildlife Service, Jackson, Mississippi, USA.
58. U.S. FISH & WILDLIFE SERVICE. 1994. Green pitcher plant recovery plan. U.S. Fish & Wildlife Service, Jackson, Mississippi, USA.
59. U.S. FISH & WILDLIFE SERVICE. 2004. TVA Reservoir operations study. FWS report to Tennessee Valley Authority, 9 February 2004, Appendix G.
60. U.S. FISH & WILDLIFE SERVICE. 2011. Endangered species profile. Available at: http://ecos.fws.gov/speciesProfile/profile/speciesProfile.action?spcode=Q21B [accessed 8 November 2011].
61. WEIR, B. S., and C. C. COCKERHAM. 1984. Estimating F -statistics for the analysis of population structure. Evolution 38: 1358-1370.
62. WHERRY, E. T. 1935. Distribution of the North American pitcher plants. In M. V. Walcott [ed.], Illustrations of North American pitcher plants. Smithsonian Institution, Washington, D.C., USA.