Identification of the thiamin salvage enzyme thiazole kinase in Arabidopsis and maize

Phytochemistry

Volumn 94, Issue , 2013, Pages 68-73

  Yazdani, Mohammad ^a   Zallot, Rémi ^b   Tunc Ozdemir, Meral ^a   De Crécy Lagard, Valérie ^b   Shintani, David K ^a   Hanson, Andrew D ^b  

^a UNIVERSITY OF NEVADA   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Arabidopsis thaliana; Brassicaceae; Comparative genomics; Poaceae; Salvage; Thiamin; Thiazole; Zea mays

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); BRASSICACEAE; ESCHERICHIA COLI; POACEAE; ZEA MAYS;

ARABIDOPSIS PROTEIN; AT3G24030 PROTEIN, ARABIDOPSIS; HYDROXYETHYLTHIAZOLE KINASE; PHOSPHOTRANSFERASE; THI1 PROTEIN, ARABIDOPSIS; THIAMINE; THIAZOLE; THIAZOLE DERIVATIVE; VEGETABLE PROTEIN;

ARABIDOPSIS; ARABIDOPSIS THALIANA; ARTICLE; BRASSICACEAE; CLASSIFICATION; COMPARATIVE GENOMICS; ENZYMOLOGY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MAIZE; METABOLISM; MUTATION; PHYLOGENY; POACEAE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALVAGE;

ARABIDOPSIS THALIANA; BRASSICACEAE; COMPARATIVE GENOMICS; POACEAE; SALVAGE; THIAMIN; THIAZOLE; ZEA MAYS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENETIC COMPLEMENTATION TEST; MUTATION; PHOSPHOTRANSFERASES; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PHYLOGENY; PLANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; THIAMINE; THIAZOLES; ZEA MAYS;

EID: 84885181135     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2013.05.017     Document Type: Article

References (34)

1. Atkins, C.A., Canvin, D.T., 1971. Photosynthesis and CO2 evolution by leaf discs - gas exchange, extraction, and ion-exchange fractionation of C14-labeled photosynthetic products. Can. J. Bot. 49, 1225-1234.
2. Aziz, R.K., Devoid, S., Disz, T., Edwards, R.A., Henry, C.S., Olsen, G.J., Olson, R., Overbeek, R., Parrello, B., Pusch, G.D., Stevens, R.L., Vonstein, V., Xia, F., 2012. SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. PLoS One 7, e48053.
3. Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K.A., Tomita, M., Wanner, B.L., Mori, H., 2006. Construction of Escherichia coli K-12 inframe, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 (2006), 0008.
4. Campobasso, N., Mathews, I.I., Begley, T.P., Ealick, S.E., 2000. Crystal structure of 4- methyl-5-beta-hydroxyethylthiazole kinase from Bacillus subtilis at 1.5 Å resolution. Biochemistry 39, 7868-7877. (Pubitemid 30452359)
5. Chatterjee, A., Abeydeera, N.D., Bale, S., Pai, P.J., Dorrestein, P.C., Russell, D.H., Ealick, S.E., Begley, T.P., 2011. Saccharomyces cerevisiae THI4p is a suicide thiamine thiazole synthase. Nature 478, 542-546.
6. Cherepanov, P.P., Wackernagel, W., 1995. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibioticresistance determinant. Gene 158, 9-14.
7. Datsenko, K.A., Wanner, B.L., 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97, 6640-6645. (Pubitemid 30412767)
8. Ferris, P.J., 1995. Localization of the nic-7, ac-29 and thi-10 genes within the matingtype locus of Chlamydomonas reinhardtii. Genetics 141, 543-549.
9. Fitzpatrick, T.B., Basset, G.J., Borel, P., Carrari, F., DellaPenna, D., Fraser, P.D., Hellmann, H., Osorio, S., Rothan, C., Valpuesta, V., Caris-Veyrat, C., Fernie, A.R., 2012. Vitamin deficiencies in humans: can plant science help? Plant Cell 24, 395-414.
10. Gerdes, S., Lerma-Ortiz, C., Frelin, O., Seaver, S.M., Henry, C.S., de Crécy-Lagard, V., Hanson, A.D., 2012. Plant B vitamin pathways and their compartmentation: a guide for the perplexed. J. Exp. Bot. 63, 5379-5395.
11. Goyer, A., 2010. Thiamine in plants: aspects of its metabolism and functions. Phytochemistry 71, 1615-1624.
12. Guzman, L.M., Belin, D., Carson, M.J., Beckwith, J., 1995. Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter. J. Bacteriol. 177, 4121-4130.
13. Jurgenson, C.T., Begley, T.P., Ealick, S.E., 2009. The structural and biochemical foundations of thiamin biosynthesis. Annu. Rev. Biochem. 78, 569-603.
14. Karunakaran, R., Ebert, K., Harvey, S., Leonard, M.E., Ramachandran, V., Poole, P.S., 2006. Thiamine is synthesized by a salvage pathway in Rhizobium leguminosarum bv. viciae strain 3841. J. Bacteriol. 188, 6661-6668. (Pubitemid 44412077)
15. Kawasaki, Y., 1993. Copurification of hydroxyethylthiazole kinase and thiaminephosphate pyrophosphorylase of Saccharomyces cerevisiae: characterization of hydroxyethylthiazole kinase as a bifunctional enzyme in the thiamine biosynthetic pathway. J. Bacteriol. 175, 5153-5158. (Pubitemid 23232578)
16. Leonardi, R., Fairhurst, S.A., Kriek, M., Lowe, D.J., Roach, P.L., 2003. Thiamine biosynthesis in Escherichia coli: isolation and initial characterisation of the ThiGH complex. FEBS Lett. 539, 95-99. (Pubitemid 36351294)
17. Li, S.L., Rédei, G.P., 1969. Thiamine mutants of the crucifer, Arabidopsis. Biochem. Genet. 3, 163-170.
18. McCourt, J.A., Nixon, P.F., Duggleby, R.G., 2006. Thiamin nutrition and catalysisinduced instability of thiamin diphosphate. Br. J. Nutr. 96, 636-638. (Pubitemid 46470186)
19. Mizote, T., Nakayama, H., 1989. The thiM locus and its relation to phosphorylation of hydroxyethylthiazole in Escherichia coli. J. Bacteriol. 171, 3228-3232. (Pubitemid 19145677)
20. Müller, I.B., Bergmann, B., Groves, M.R., Couto, I., Amaral, L., Begley, T.P., Walter, R.D., Wrenger, C., 2009a. The vitamin B1 metabolism of Staphylococcus aureus is controlled at enzymatic and transcriptional levels. PLoS One 4, e7656.
21. Müller, M., Gocke, D., Pohl, M., 2009b. Thiamin diphosphate in biological chemistry: exploitation of diverse thiamin diphosphate-dependent enzymes for asymmetric chemoenzymatic synthesis. FEBS J. 276, 2894-2904.
22. Murashige, T., Skoog, F., 1962. A revised medium for rapid growth and bio-assays with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
23. Nosaka, K., Nishimura, H., Kawasaki, Y., Tsujihara, T., Iwashima, A., 1994. Isolation and characterization of the THI6 gene encoding a bifunctional thiamin-phosphate pyrophosphorylase/hydroxyethylthiazole kinase from Saccharomyces cerevisiae. J. Biol. Chem. 269, 30510-30516. (Pubitemid 24376533)
24. Park, J.H., Burns, K., Kinsland, C., Begley, T.P., 2004. Characterization of two kinases involved in thiamine pyrophosphate and pyridoxal phosphate biosynthesis in Bacillus subtilis: 4-amino-5-hydroxymethyl-2methylpyrimidine kinase and pyridoxal kinase. J. Bacteriol. 186, 1571-1573. (Pubitemid 38248748)
25. Paul, D., Chatterjee, A., Begley, T.P., Ealick, S.E., 2010. Domain organization in Candida glabrata THI6, a bifunctional enzyme required for thiamin biosynthesis in eukaryotes. Biochemistry 49, 9922-9934.
26. Petersen, L.A., Downs, D.M., 1997. Identification and characterization of an operon in Salmonella typhimurium involved in thiamine biosynthesis. J. Bacteriol. 179, 4894-4900. (Pubitemid 27339738)
27. Reddick, J.J., Kinsland, C., Nicewonger, R., Christian, T., Downs, D.M., Winkler, M.E., Begley, T.P., 1998. Overexpression, purification and characterization of two pyrimidine kinases involved in the biosynthesis of thiamin: 4-amino-5- hydroxymethyl-2-methylpyrimidine kinase and 4-amino-5-hydroxymethyl-2- methylpyrimidine phosphate kinase. Tetrahedron 54, 15983-15991. (Pubitemid 28551919)
28. Sambrook, J., Russell, D.W., 2001. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
29. Sun, Q., Zybailov, B., Majeran, W., Friso, G., Olinares, P.D., van Wijk, K.J., 2009. PPDB, the Plant Proteomics Database at Cornell. Nucleic Acids Res. 37, D969-D974.
30. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S., 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739.
31. Tanz, S.K., Castleden, I., Hooper, C.M., Vacher, M., Small, I., Millar, H.A., 2013. SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41, D1185-D1191.
32. Tunc-Ozdemir, M., Miller, G., Song, L., Kim, J., Sodek, A., Koussevitzky, S., Misra, A.N., Mittler, R., Shintani, D., 2009. Thiamin confers enhanced tolerance to oxidative stress in Arabidopsis. Plant Physiol. 151, 421-432.
33. Wrenger, C., Eschbach, M.L., Müller, I.B., Laun, N.P., Begley, T.P., Walter, R.D., 2006. Vitamin B1 de novo synthesis in the human malaria parasite Plasmodium falciparum depends on external provision of 4-amino-5-hydroxymethyl- 2- methylpyrimidine. Biol. Chem. 387, 41-51. (Pubitemid 43089593)
34. Zhang, Y., Taylor, S.V., Chiu, H.J., Begley, T.P., 1997. Characterization of the Bacillus subtilis thiC operon involved in thiamine biosynthesis. J. Bacteriol. 179, 3030-3035. (Pubitemid 27194454)