MicroRNAs and cell fate in cortical and retinal development

Frontiers in Cellular Neuroscience

Volumn , Issue SEP, 2013, Pages

  Cremisi, Federico ^a  

^a SCUOLA NORMALE SUPERIORE   (Italy)

Author keywords

Cell birth date; Cell fate; Cortex; Development; Heterochronic; Retina; Timing

Indexed keywords

BONE MORPHOGENETIC PROTEIN; CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE II; CYCLIN D1; DICER; FIBROBLAST GROWTH FACTOR; HOMEODOMAIN PROTEIN; IKAROS TRANSCRIPTION FACTOR; MICRORNA; MICRORNA 92B; NESTIN; PROTEIN CHX10; PROTEIN CTIP2; PROTEIN DKK3; PROTEIN FEZF2; PROTEIN RX; PROTEIN SATB2; SONIC HEDGEHOG PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR E2F; TRANSCRIPTION FACTOR EMX1; TRANSCRIPTION FACTOR FOXG1; TRANSCRIPTION FACTOR PAX6; UNCLASSIFIED DRUG; WNT PROTEIN;

BRAIN CORTEX; BRAIN DEVELOPMENT; CELL FATE; CELL LINEAGE; CELL MATURATION; CELL STRUCTURE; CELL TYPE; GENE CONTROL; GENE EXPRESSION; GENE INACTIVATION; HISTOGENESIS; MULTIPOTENT STEM CELL; NERVE CELL DIFFERENTIATION; NERVE CELL PLASTICITY; NONHUMAN; PROTEIN FUNCTION; RETINA DEVELOPMENT; RETINA NERVE CELL; REVIEW; RNA TRANSLATION; TRANSCRIPTION INITIATION;

EID: 84885144281     PISSN: 16625102     EISSN: None     Source Type: Journal    
DOI: 10.3389/fncel.2013.00141     Document Type: Review

References (56)

1. Alexiades, M. R., and Cepko, C. (1996). Quantitative analysis of proliferation and cell cycle length during development of the rat retina. Dev. Dyn. 205, 293-307. doi: 10.1002/(SICI)1097-0177(199603)205:3<293::AID-AJA9>3.0.CO;2-D
2. Alsiö, J., and Tarchini, B. (2013). Ikaros promotes early-born neuronal fates in the cerebral cortex. Proc. Natl. Acad. Sci. U.S.A. 110, E716-E725. doi: 10.1073/pnas.1215707110
3. Bailey, S. G., Sanchez-Elsner, T., Stephanou, A., Cragg, M. S., and Townsend, P. A. (2010). Regulating the genome surveillance system: miRNAs and the p53 super family. Apoptosis 15, 541-552. doi: 10.1007/s10495-010-0456-1
4. Bayraktar, O. A., and Doe, C. Q. (2013). Combinatorial temporal patterning in progenitors expands neural diversity. Nature 498, 449-455. doi: 10.1038/nature12266
5. Bian, S., and Sun, T. (2011). Functions of noncoding RNAs in neural development and neurological diseases. Mol. Neurobiol. 44, 359-373. doi: 10.1007/s12035-011-8211-3
6. Britanova, O., Akopov, S., Lukyanov, S., Gruss, P., and Tarabykin, V. (2005). Novel transcription factor Satb2 interacts with matrix attachment region DNA elements in a tissue-specific manner and demonstrates cell-type-dependent expression in the developing mouse CNS. Eur. J. Neurosci. 21, 658-668. doi: 10.1111/j.1460-9568.2005.03897.x
7. Caviness, V. S., Takahashi, T., and Nowakowski, R. S. (1995). Numbers, time and neocortical neuronogenesis: a general developmental and evolutionary model. Trends Neurosci. 18, 379-383. doi: 10.1016/0166-2236(95)93933-O
8. Conte, I., Carrella, S., Avellino, R., Karali, M., Marco-Ferreres, R., Bovolenta, P., et al. (2010). miR-204 is required for lens and retinal development via Meis2 targeting. Proc. Natl. Acad. Sci. U.S.A. 107, 15491-15496. doi: 10.1073/pnas.0914785107
9. Coolen, M., and Bally-Cuif, L. (2009). MicroRNAs in brain development and physiology. Curr. Opin. Neurobiol. 19, 461-470. doi: 10.1016/j.conb.2009.09.006
10. Damiani, D., Alexander, J. J., O'Rourke, J. R., McManus, M., Jadhav, A. P., Cepko, C. L., et al. (2008). Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina. J. Neurosci. 28, 4878-4887. doi: 10.1523/JNEUROSCI.0828-08.2008
11. D'Autilia, S., Decembrini, S., Casarosa, S., He, R.-Q., Barsacchi, G., Cremisi, F., et al. (2006). Cloning and developmental expression of the Xenopus homeobox gene Xvsx1. Dev. Genes Evol. 216, 829-834. doi: 10.1002/(SICI)1097-0177(199603)205:3<293::AID-AJA9>3.0.CO;2-D
12. Davis, T. H., Cuellar, T. L., Koch, S. M., Barker, A. J., Harfe, B. D., McManus, M. T., et al. (2008). Conditional loss of Dicer disrupts cellular and tissue morphogenesis in the cortex and hippocampus. J. Neurosci. 28, 4322-4330. doi: 10.1523/JNEUROSCI.4815-07.2008
13. Decembrini, S., Andreazzoli, M., Barsacchi, G., and Cremisi, F. (2008). Dicer inactivation causes heterochronic retinogenesis in Xenopus laevis. Int. J. Dev. Biol. 52, 1099-1103. doi: 10.1387/ijdb.082646sd
14. Decembrini, S., Andreazzoli, M., Vignali, R., Barsacchi, G., and Cremisi, F. (2006). Timing the generation of distinct retinal cells by homeobox proteins. PLoS Biol. 4:e272. doi: 10.1371/journal.pbio.0040272
15. Decembrini, S., Bressan, D., Vignali, R., Pitto, L., Mariotti, S., Rainaldi, G., et al. (2009). MicroRNAs couple cell fate and developmental timing in retina. Proc. Natl. Acad. Sci. U.S.A.106, 21179-21184. doi: 10.1073/pnas.0909167106
16. De Chevigny, A., Coré, N., Follert, P., Gaudin, M., Barbry, P., Béclin, C., et al. (2012). miR-7a regulation of Pax6 controls spatial origin of forebrain dopaminergic neurons. Nat. Neurosci.15, 1120-1126. doi: 10.1038/nn.3142
17. De Pietri Tonelli, D., Pulvers, J. N., Haffner, C., Murchison, E. P., Hannon, G. J., and Huttner, W. B. (2008). miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex. Development 135, 3911-3921. doi: 10.1242/dev.025080
18. Desai, A. R., and McConnell, S. K. (2000). Progressive restriction in fate potential by neural progenitors during cerebral cortical development. Development 127, 2863-2872. doi: 10.1073/pnas.1215707110
19. Elliott, J., Jolicoeur, C., Ramamurthy, V., and Cayouette, M. (2008). Ikaros confers early temporal competence to mouse retinal progenitor cells. Neuron 60, 26-39. doi: 10.1016/j.neuron.2008.08.008
20. Fineberg, S. K., Kosik, K. S., and Davidson, B. L. (2009). MicroRNAs potentiate neural development. Neuron 64, 303-309. doi: 10.1016/j.neuron.2009.10.020
21. Frantz, G. D., and McConnell, S. K. (1996). Restriction of late cerebral cortical progenitors to an upper-layer fate. Neuron 17, 55-61. doi: 10.1016/S0896-6273(00)80280-9
22. Georgi, S. A, and Reh, T. A. (2010). Dicer is required for the transition from early to late progenitor state in the developing mouse retina. J. Neurosci. 30, 4048-4061. doi: 10.1523/JNEUROSCI.4982-09.2010
23. He, M., Liu, Y., Wang, X., and Zhang, M. (2012). Cell-type based analysis of microRNA profiles in the mouse brain. Neuron 73, 35-48. doi: 10.1016/j.neuron.2011.11.010
24. Holt, C. E., Bertsch, T. W., Ellis, H. M., and Harris, W. A. (1988). Cellular determination in theXenopus retina is independent of lineage and birth date. Neuron 1, 15-26. doi: 10.1016/0896-6273(88)90205-X
25. Iida, A., Shinoe, T., Baba, Y., Mano, H., and Watanabe, S. (2011). Dicer plays essential roles for retinal development by regulation of survival and differentiation. Invest. Ophthalmol. Vis. Sci. 52, 3008-3017. doi: 10.1167/iovs.10-6428
26. Isshiki, T., Pearson, B., Holbrook, S., and Doe, C. Q. (2001). Drosophila neuroblasts sequentially express transcription factors which specify the temporal identity of their neuronal progeny. Cell 106, 511-521. doi: 10.1016/S0092-8674(01)00465-2
27. Karali, M., Peluso, I., Gennarino, V. A, Bilio, M., Verde, R., Lago, G., et al. (2010). miRNeye: a microRNA expression atlas of the mouse eye. BMC Genomics 11:715. doi: 10.1186/1471-2164-11-715
28. Kawase-Koga, Y., Otaegi, G., and Sun, T. (2009). Different timings of Dicer deletion affect neurogenesis and gliogenesis in the developing mouse central nervous system. Dev. Dyn. 238, 2800-2812. doi: 10.1002/dvdy.22109
29. Komada, M., Saitsu, H., Kinboshi, M., Miura, T., Shiota, K., and Ishibashi, M. (2008). Hedgehog signaling is involved in development of the neocortex. Development 135, 2717-2727. doi: 10.1242/dev.015891
30. Krol, J., Loedige, I., and Filipowicz, W. (2010). The widespread regulation of microRNA biogenesis, function and decay. Nat. Rev. Genet. 11, 597-610.
31. La Torre, A., La, Georgi, S., and Reh, T. A. (2013). Conserved microRNA pathway regulates developmental timing of retinal neurogenesis. Proc. Natl. Acad. Sci. U.S.A. 110, E2362-E2370. doi: 10.1073/pnas.1301837110
32. Leone, D., Srinivasan, K., and Chen, B. (2008). The determination of projection neuron identity in the developing cerebral cortex. Curr. Opin. Neurobiol. 18, 28-35. doi: 10.1016/j.conb.2008.05.006
33. Li, X., Erclik, T., Bertet, C., Chen, Z., Voutev, R., Venkatesh, S., et al. (2013). Temporal patterning of Drosophila medulla neuroblasts controls neural fates. Nature 498, 456-462. doi: 10.1038/nature12319
34. Locker, M., Agathocleous, M., Amato, M. A., Parain, K., Harris, W. A., and Perron, M. (2006). Hedgehog signaling and the retina: insights into the mechanisms controlling the proliferative properties of neural precursors. Genes Dev. 20, 3036-3048. doi: 10.1101/gad.391106
35. McConnell, S. K., and Kaznowski, C. E. (1991). Cell cycle dependence of laminar determination in developing neocortex. Science 254, 282-285. doi: 10.1126/science.1925583
36. Nowakowski, T. J., Fotaki, V., Pollock, A., Sun, T., Pratt, T., and Price, D. J. (2013). MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain. Proc. Natl. Acad. Sci. U.S.A. 110, 7056-7061. doi: 10.1073/pnas.1219385110
37. Nowakowski, T. J., Mysiak, K. S., Pratt, T., and Price, D. J. (2011). Functional Dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon. PLoS ONE 6:e23013. doi: 10.1371/journal.pone.0023013
38. Ohsawa, R., and Kageyama, R. (2008). Regulation of retinal cell fate specification by multiple transcription factors. Brain Res. 1192, 90-98. doi: 10.1016/j.brainres.2007.04.014
39. Otaegi, G., Pollock, A., Hong, J., and Sun, T. (2011). MicroRNA miR-9 modifies motor neuron columns by a tuning regulation of FoxP1 levels in developing spinal cords. J. Neurosci. 31, 809-818. doi: 10.1523/JNEUROSCI.4330-10.2011
40. Pinter, R., and Hindges, R. (2010). Perturbations of microRNA function in mouse Dicer mutants produce retinal defects and lead to aberrant axon pathfinding at the optic chiasm. PLoS ONE 5:e10021. doi: 10.1371/journal.pone.0010021
41. Pitto, L., and Cremisi, F. (2010). Timing neurogenesis by cell cycle? Cell Cycle 9, 434-435. doi: 10.4161/cc.9.3.10762
42. Rubenstein, J. L. R. (2011). Annual research review: development of the cerebral cortex: implications for neurodevelopmental disorders. J. Child Psychol. Psychiatry 52, 339-355. doi: 10.1111/j.1469-7610.2010.02307.x
43. Salomoni, P., and Calegari, F. (2010). Cell cycle control of mammalian neural stem cells: putting a speed limit on G1. Trends Cell Biol. 20, 233-243. doi: 10.1016/j.tcb.2010.01.006
44. Sanuki, R., Onishi, A., Koike, C., Muramatsu, R., Watanabe, S., Muranishi, Y., et al. (2011). miR-124a is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression. Nat. Neurosci. 14, 1125-1134. doi: 10.1038/nn.2897
45. Sessa, A., Mao, C.-A., Colasante, G., Nini, A., Klein, W. H., and Broccoli, V. (2010). Tbr2-positive intermediate (basal) neuronal progenitors safeguard cerebral cortex expansion by controlling amplification of pallial glutamatergic neurons and attraction of subpallial GABAergic interneurons. Genes Dev. 24, 1816-1826. doi: 10.1101/gad.575410
46. Sessa, A., Mao, C.-A., Hadjantonakis, A.-K., Klein, W. H., and Broccoli, V. (2008). Tbr2 directs conversion of radial glia into basal precursors and guides neuronal amplification by indirect neurogenesis in the developing neocortex. Neuron 60, 56-69. doi: 10.1016/j.neuron.2008.09.028
47. Srinivasan, K., Leone, D. P., Bateson, R. K., Dobreva, G., Kohwi, Y., Kohwi-Shigematsu, T., et al. (2012). A network of genetic repression and derepression specifies projection fates in the developing neocortex. Proc. Natl. Acad. Sci. U.S.A. 109, 19071-19078. doi: 10.1073/pnas.1216793109
48. Stappert, L., Borghese, L., Roese-Koerner, B., Weinhold, S., Koch, P., Terstegge, S., et al. (2013). MicroRNA-based promotion of human neuronal differentiation and subtype specification. PLoS ONE 8:e59011. doi: 10.1371/journal.pone.0059011
49. Suzuki, T., Kaido, M., Takayama, R., and Sato, M. (2013). A temporal mechanism that produces neuronal diversity in the Drosophila visual center. Dev. Biol. 380, 12-24. doi: 10.1016/j.ydbio.2013.05.002
50. Turner, D. L., and Cepko, C. L. (1987). A common progenitor for neurons and glia persists in rat retina late in development. Nature 328, 131-136. doi: 10.1038/328131a0
51. Usui, A., Mochizuki, Y., Iida, A., Miyauchi, E., Satoh, S., Sock, E., et al. (2013). The early retinal progenitor-expressed gene Sox11 regulates the timing of the differentiation of retinal cells. Development 140, 740-750. doi: 10.1242/dev.090274
52. Viczian, A. S., Vignali, R., Zuber, M. E., Barsacchi, G., and Harris, W. A. (2003). XOtx5b and XOtx2 regulate photoreceptor and bipolar fates in the Xenopus retina. Development 130, 1281-1294. doi: 10.1242/dev.00343
53. Walker, J. C., and Harland, R. M. (2009). microRNA-24a is required to repress apoptosis in the developing neural retina. Genes Dev. 23, 1046-1051. doi: 10.1101/gad.1777709
54. Wang, Y., Dakubo, G. D., Thurig, S., Mazerolle, C. J., and Wallace, V. A. (2005). Retinal ganglion cell-derived sonic hedgehog locally controls proliferation and the timing of RGC development in the embryonic mouse retina. Development 132, 5103-5113. doi: 10.1242/dev.02096
55. Wetts, R., and Fraser, S. E. (1988). Multipotent precursors can give rise to all major cell types of the frog retina. Science 239, 1142-1145. doi: 10.1126/science.2449732
56. Yang, D., Li, T., Wang, Y., Tang, Y., Cui, H., Tang, Y., et al. (2012). miR-132 regulates the differentiation of dopamine neurons by directly targeting Nurr1 expression. J. Cell Sci. 125(Pt 7), 1673-1682. doi: 10.1242/jcs.086421