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Volumn 8, Issue 9, 2012, Pages

High-throughput Computer Method for 3D Neuronal Structure Reconstruction from the Image Stack of the Drosophila Brain and Its Applications

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN; GRAPH THEORY; IMAGE RECONSTRUCTION; NEURAL NETWORKS; THROUGHPUT;

EID: 84866912879     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002658     Document Type: Article
Times cited : (25)

References (24)
  • 2
    • 0035813622 scopus 로고    scopus 로고
    • Three-dimensional mapping of brain neuropils in the cockroach Diploptera punctata
    • Chiang AS, Liu YC, Hu SH, Huang CY, Hsieh CH, (2001) Three-dimensional mapping of brain neuropils in the cockroach Diploptera punctata. J Comp Neurol 440: 1-11.
    • (2001) J Comp Neurol , vol.440 , pp. 1-11
    • Chiang, A.S.1    Liu, Y.C.2    Hu, S.H.3    Huang, C.Y.4    Hsieh, C.H.5
  • 4
    • 18144382323 scopus 로고    scopus 로고
    • Flux driven automatic centerline extraction
    • Bouix S, Siddiqi K, Tannenbaum K, (2005) Flux driven automatic centerline extraction. Med Image Anal 9: 209-221.
    • (2005) Med Image Anal , vol.9 , pp. 209-221
    • Bouix, S.1    Siddiqi, K.2    Tannenbaum, K.3
  • 6
    • 0035779633 scopus 로고    scopus 로고
    • Fast extraction of minimal paths in 3D images and application to virtual endoscopy
    • Deschamps T, Cohen LD, (2001) Fast extraction of minimal paths in 3D images and application to virtual endoscopy. Med Image Anal 5: 281-299.
    • (2001) Med Image Anal , vol.5 , pp. 281-299
    • Deschamps, T.1    Cohen, L.D.2
  • 7
    • 0035385756 scopus 로고    scopus 로고
    • Penalized-distance volumetric skeleton algorithm
    • Bitter I, Kaufman AE, Sato M, (2001) Penalized-distance volumetric skeleton algorithm. IEEE T Vis Comput Gr 7: 195-205.
    • (2001) IEEE T Vis Comput Gr , vol.7 , pp. 195-205
    • Bitter, I.1    Kaufman, A.E.2    Sato, M.3
  • 8
    • 34548523351 scopus 로고    scopus 로고
    • Vessels as 4-D curves: global minimal 4-D paths to extract 3-D tubular surfaces and centerlines
    • Li H, Yezzi A, (2007) Vessels as 4-D curves: global minimal 4-D paths to extract 3-D tubular surfaces and centerlines. IEEE Tran Med Imaging 26: 1213-1223.
    • (2007) IEEE Tran Med Imaging , vol.26 , pp. 1213-1223
    • Li, H.1    Yezzi, A.2
  • 10
    • 79958161539 scopus 로고    scopus 로고
    • Automated reconstructions of neuronal morphology based on local geometrical and global structural models
    • Zhao T, Xie J, Amat F, Clack N, Ahammad P, et al. (2011) Automated reconstructions of neuronal morphology based on local geometrical and global structural models. NeuroInform 9: 247-261.
    • (2011) NeuroInform , vol.9 , pp. 247-261
    • Zhao, T.1    Xie, J.2    Amat, F.3    Clack, N.4    Ahammad, P.5
  • 11
    • 34147198443 scopus 로고    scopus 로고
    • Automated neurite extraction using dynamic programming for high-throughput screening of neuron based assays
    • Zhang Y, Zhou X, Degterev A, Lipinski M, Adjeroh D, et al. (2007) Automated neurite extraction using dynamic programming for high-throughput screening of neuron based assays. NeuroImage 35: 1502-1515.
    • (2007) NeuroImage , vol.35 , pp. 1502-1515
    • Zhang, Y.1    Zhou, X.2    Degterev, A.3    Lipinski, M.4    Adjeroh, D.5
  • 13
    • 77954196544 scopus 로고    scopus 로고
    • Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model
    • Peng H, Ruan Z, Atasoy D, Sternson S, (2010) Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinformatics 26: i38-i46.
    • (2010) Bioinformatics , vol.26
    • Peng, H.1    Ruan, Z.2    Atasoy, D.3    Sternson, S.4
  • 14
    • 79958172203 scopus 로고    scopus 로고
    • Automated reconstruction of dendritic and axonal tress by global optimization with geometric priors
    • Türetken E, Gonzalez G, Blum C, Fau P, (2011) Automated reconstruction of dendritic and axonal tress by global optimization with geometric priors. NeuroInform 9: 279-302.
    • (2011) NeuroInform , vol.9 , pp. 279-302
    • Türetken, E.1    Gonzalez, G.2    Blum, C.3    Fau, P.4
  • 15
    • 79958135341 scopus 로고    scopus 로고
    • The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions
    • Brown KM, Barrionuevo G, Canty AJ, De Paola V, Hirsch JA, et al. (2011) The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. Neuroinformatics 9: 143-57.
    • (2011) Neuroinformatics , vol.9 , pp. 143-157
    • Brown, K.M.1    Barrionuevo, G.2    Canty, A.J.3    de Paola, V.4    Hirsch, J.A.5
  • 16
    • 84873487836 scopus 로고    scopus 로고
    • Available, Accessed
    • FlyCircuit Database. Available: http://www.flycircuit.tw Accessed 2010.
    • (2010) FlyCircuit Database
  • 17
    • 84873513019 scopus 로고    scopus 로고
    • Available
    • HClust. Available: http://stat.ethz.ch/R-manual/R-devel/library/stats/html/hclust.html.
    • HClust
  • 19
    • 0028084578 scopus 로고
    • The organization of the chemosensory system in Drosophila melanogaster: a review
    • Stocker RF, (1994) The organization of the chemosensory system in Drosophila melanogaster: a review. Cell Tissue Res 275: 3-26.
    • (1994) Cell Tissue Res , vol.275 , pp. 3-26
    • Stocker, R.F.1
  • 20
    • 79151480913 scopus 로고    scopus 로고
    • Three-dimensional reconstruction of brainwide wiring networks in Drosophila at single cell resolution
    • Chiang AS, Lin CY, Chuang CC, Chang HM, Hsieh CH, et al. (2010) Three-dimensional reconstruction of brainwide wiring networks in Drosophila at single cell resolution. Curr Biol 21: 1-11.
    • (2010) Curr Biol , vol.21 , pp. 1-11
    • Chiang, A.S.1    Lin, C.Y.2    Chuang, C.C.3    Chang, H.M.4    Hsieh, C.H.5
  • 22
    • 0032293808 scopus 로고    scopus 로고
    • Distance-ordered homotopic thinning: a skeletonization algorithm for 3D digital images
    • Pudney C, (1998) Distance-ordered homotopic thinning: a skeletonization algorithm for 3D digital images. Comput Vis Image Und 72: 404-413.
    • (1998) Comput Vis Image Und , vol.72 , pp. 404-413
    • Pudney, C.1
  • 24
    • 79958161138 scopus 로고    scopus 로고
    • Diadem X: Automated 4 dimensional analysis of morphological data
    • He HY, Cline HT, (2011) Diadem X: Automated 4 dimensional analysis of morphological data. Neuroinform 9: 109-112.
    • (2011) Neuroinform , vol.9 , pp. 109-112
    • He, H.Y.1    Cline, H.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.