메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Bolbase: A comprehensive genomics database for Brassica oleracea

Author keywords

Brassica oleracea; Comparative genomics; Database; Genome sequence; Synteny

Indexed keywords

UNTRANSLATED RNA;

EID: 84884944185     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-664     Document Type: Article
Times cited : (93)

References (21)
  • 1
    • 0000150298 scopus 로고
    • Genome analysis in brassica with special reference to the experimental formation of B. Napus and peculiar mode of fertilization
    • U N
    • U N Genome analysis in brassica with special reference to the experimental formation of B. Napus and peculiar mode of fertilization. Japan J Bot 1935, 7:389-452. U N.
    • (1935) Japan J Bot , vol.7 , pp. 389-452
  • 4
    • 17844378690 scopus 로고    scopus 로고
    • Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis
    • 10.1101/gr.3176505, 1074363, 15805490
    • Ayele MHB, Kumar N, Wu H, Xiao Y, Aken SV, Utterback TR, Wortman JR, White OR, Town CD. Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis. Genome Res 2005, 15:487-495. 10.1101/gr.3176505, 1074363, 15805490.
    • (2005) Genome Res , vol.15 , pp. 487-495
    • Ayele, M.H.B.1    Kumar, N.2    Wu, H.3    Xiao, Y.4    Aken, S.V.5    Utterback, T.R.6    Wortman, J.R.7    White, O.R.8    Town, C.D.9
  • 5
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • 10.1038/nature01521, 12660784
    • Bowers JE, Chapman BA, Rong J, Paterson AH. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 2003, 422(6930):433-438. 10.1038/nature01521, 12660784.
    • (2003) Nature , vol.422 , Issue.6930 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 6
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between brassica and other angiosperm lineages
    • 10.1007/PL00006502, 10198125
    • Yau-Wen Yang K-NL, Pon-Yean T, Wen-Hsiung L. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between brassica and other angiosperm lineages. J Mol Evol 1999, 48:597-604. 10.1007/PL00006502, 10198125.
    • (1999) J Mol Evol , vol.48 , pp. 597-604
    • Yau-Wen Yang, K.-N.L.1    Pon-Yean, T.2    Wen-Hsiung, L.3
  • 7
    • 33745487720 scopus 로고    scopus 로고
    • Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of brassica Rapa
    • 10.1105/tpc.105.040535, 1475497, 16632644
    • Tae-Jin Yang JSK, Soo-Jin K, Ki-Byung L, Beom-Soon C, Jin-A K, Mina J, et al. Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of brassica Rapa. Plant Cell 2006, 18:1339-1347. 10.1105/tpc.105.040535, 1475497, 16632644.
    • (2006) Plant Cell , vol.18 , pp. 1339-1347
    • Tae-Jin Yang, J.S.K.1    Soo-Jin, K.2    Ki-Byung, L.3    Beom-Soon, C.4    Jin-A, K.5    Mina, J.6
  • 8
    • 0036923850 scopus 로고    scopus 로고
    • Phylogenetic analysis of brassiceae based on the nucleotide sequences of the S-locus related gene, SLR1
    • 10.1007/s00122-002-0968-3, 12582894
    • Inaba RNT. Phylogenetic analysis of brassiceae based on the nucleotide sequences of the S-locus related gene, SLR1. Theor Appl Genet 2002, 105(8):1159-1165. 10.1007/s00122-002-0968-3, 12582894.
    • (2002) Theor Appl Genet , vol.105 , Issue.8 , pp. 1159-1165
    • Inaba, R.N.T.1
  • 9
    • 80053914535 scopus 로고    scopus 로고
    • BRAD, the genetics and genomics database for brassica plants
    • 10.1186/1471-2229-11-136, 3213011, 21995777
    • Cheng F, Liu S, Wu J, Fang L, Sun S, Liu B, Li P, Hua W, Wang X. BRAD, the genetics and genomics database for brassica plants. BMC Plant Biol 2011, 11:136. 10.1186/1471-2229-11-136, 3213011, 21995777.
    • (2011) BMC Plant Biol , vol.11 , pp. 136
    • Cheng, F.1    Liu, S.2    Wu, J.3    Fang, L.4    Sun, S.5    Liu, B.6    Li, P.7    Hua, W.8    Wang, X.9
  • 10
    • 0035180589 scopus 로고    scopus 로고
    • The Arabidopsis information resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
    • 10.1093/nar/29.1.102, 29827, 11125061
    • Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, et al. The Arabidopsis information resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res 2001, 29(1):102-105. 10.1093/nar/29.1.102, 29827, 11125061.
    • (2001) Nucleic Acids Res , vol.29 , Issue.1 , pp. 102-105
    • Huala, E.1    Dickerman, A.W.2    Garcia-Hernandez, M.3    Weems, D.4    Reiser, L.5    LaFond, F.6    Hanley, D.7    Kiphart, D.8    Zhuang, M.9    Huang, W.10
  • 11
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: interactive sequence similarity searching
    • Web Server issue, 3125773, 21593126
    • Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 2011, 39(Web Server issue):W29-37. 3125773, 21593126.
    • (2011) Nucleic Acids Res , vol.39
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 13
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • 10.1101/gr.1224503, 403725, 12952885
    • Li L, Stoeckert CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13(9):2178-2189. 10.1101/gr.1224503, 403725, 12952885.
    • (2003) Genome Res , vol.13 , Issue.9 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 14
    • 84860137835 scopus 로고    scopus 로고
    • MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
    • 10.1093/nar/gkr1293, 3326336, 22217600
    • Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res 2012, 40(7):e49. 10.1093/nar/gkr1293, 3326336, 22217600.
    • (2012) Nucleic Acids Res , vol.40 , Issue.7
    • Wang, Y.1    Tang, H.2    Debarry, J.D.3    Tan, X.4    Li, J.5    Wang, X.6    Lee, T.H.7    Jin, H.8    Marler, B.9    Guo, H.10
  • 15
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 18
  • 20
    • 75949096070 scopus 로고    scopus 로고
    • Using the generic genome browser (GBrowse)
    • Donlin MJ. Using the generic genome browser (GBrowse). Curr Protoc Bioinformatics 2009, 28:9.9.1-9.9.25.
    • (2009) Curr Protoc Bioinformatics , vol.28
    • Donlin, M.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.