Magnetic isotope and magnetic field effects on the DNA synthesis

Nucleic Acids Research

Volumn 41, Issue 17, 2013, Pages 8300-8307

  Buchachenko, Anatoly L ^a,b,c   Orlov, Alexei P ^d   Kuznetsov, Dmitry A ^a,b,c,d   Breslavskaya, Natalia N ^e  

^a SEMENOV INSTITUTE OF CHEMICAL PHYSICS   (Russian Federation)

^b INSTITUTE OF PROBLEMS OF CHEMICAL PHYSICS   (Russian Federation)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

^d PIROGOV RUSSIAN NATIONAL RESEARCH MEDICAL UNIVERSITY   (Russian Federation)

^e KURNAKOV INSTITUTE OF GENERAL AND INORGANIC CHEMISTRY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA DIRECTED DNA POLYMERASE BETA; DNA POLYMERASE; ISOTOPE; MAGNESIUM ION; ZINC ION;

ARTICLE; CATALYSIS; CONTROLLED STUDY; DNA REPAIR; DNA REPLICATION; DNA SYNTHESIS; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME MECHANISM; MAGNETIC FIELD; MOLECULAR DYNAMICS; MOLECULAR WEIGHT; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS;

DNA; DNA POLYMERASE BETA; ISOTOPES; MAGNESIUM; MAGNETIC FIELDS; ZINC ISOTOPES;

EID: 84884943626     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt537     Document Type: Article

References (42)

1. Steitz,T.A. and Steitz,J.A. (1993) A general two-metal-ion mechanism for catalytic RNA. Proc. Natl Acad. Sci. USA, 90, 6498-6502. (Pubitemid 23207240)
2. Steitz,T.A. (1999) DNA polymerases: structural diversity and common mechanisms. J.Biol. Chem., 274, 17395-17398.
3. Yang,L., Arora,K., Beard,W.A., Wilson,S.H. and Schlick,T. (2004) Critical role of magnesium ions in DNA polymerase b,s closing and active site assembly. J. Am. Chem. Soc., 126, 8441-8453. (Pubitemid 38917967)
4. Yang,L., Beard,W.A., Wilson,S.H., Broyde,S. and Schlick,T. (2002) Polymerase b simulations suggest that Arg258 rotation is a slow step. J. Mol. Biol., 317, 651-671.
5. Bojin,M.D. and Schlick,T. (2007) A quantum mechanical investigation of possible mechanisms for the nucleotidyl transfer reaction catalyzed by DNA polymerase b. J. Phys. Chem. B, 111, 11244-11252. (Pubitemid 47548377)
6. Alberts,I.L., Wang,Y. and Schlick,T. (2007) DNA polymerase b catalysis: are different mechanisms possible? J. Am. Chem. Soc., 129, 11100-11110. (Pubitemid 47435713)
7. Buchachenko,A.L., Kuznetsov,D.A. and Breslavskaya,N.N. (2012) Chemistry of enzymatip ATP synthesis: an insight through the isotope window. Chem. Rev., 112, 2042-2058.
8. Buchachenko,A.L., Kuznetsov,D.A., Arkhangelsky,S.E., Orlova,M.A. and Markaryan,A. (2005) Magnetic isotope effect of magnesium in the phosphoglycerate kinase phosphorylation. Proc. Natl Acad. Sci. USA, 102, 10793-10796. (Pubitemid 41105944)
9. Buchachenko,A.L. (2009) Magnetic Isotope Effect in Chemistry and Biochemistry. Nova Science Publishers, New York.
10. Buchachenko,A.L., Kuznetsov,D.A., Arkhangelsky,S.E., Orlova,M.A. and Markaryan,A. (2005) Spin biochemistry: magnetic isotope effect 24Mg-25Mg-26Mg in mitochondrial ADP phosphorylation. Cell Biochem. Biophys., 43, 243-252.
11. Amirshahi,N., Alyautdin,R., Sarkar,S., Rezayat,S., Orlova,M., Trushkov,I., Buchachenko,A. and Kuznetsov,D. (2008) Use of a magnesium isotope for treating hypoxia. Arch. Med. Res., 39, 549-561.
12. Crotty,D., Silkstone,G., Poddar,S., Ranson,R., Prina-Mello,A., Wilson,M. and Coey,J.M. (2012) Reexamination of magnetic isotope and field effects on adenosine triphosphate production by creatine kinase. Proc. Natl Acad. Sci. USA, 109, 1437-1442.
13. Haratian,K., Shahrabadi,M.S. and Sardari,S. (2007) Buthionine sulfoxime inhibits cytopathic effects and apoptosis induced by infection with AIK-HDC strain of measles virus. Iran Biomed. J., 11, 229-235. (Pubitemid 350021924)
14. Reichman,M.E., Rice,S.A., Thomask,Q.A. and Doty,P. (1957) Further examination of the molecular weight and size of deoxyribonucleic acid. J. Amer. Chem. Soc., 76, 3047-3053.
15. Sakaguchi,K. and Boyd,J.B. (1985) Purification and characterization of DNA polymerase beta from Drosophila melanogaster. J. Biol. Chem., 260, 10406-10411. (Pubitemid 16252210)
16. Mikami,T., Satoh,N., Hatayama,I. and Nakane,A. (2004) The inhibition effect of buthionine sulfoximine on cytopathic effect and apoptosis induced by human echovirus 9. Arch. Virol., 149, 1117-1128. (Pubitemid 38791659)
17. Fukami,T., Uchiyama,K., Yoshimura,Y., Watanabe,T. and Nakazawa,H. (1996) Ultramicroanalysis by use of light-scanning photoacoustic densitometry for electrophoresed protein in human hair. Anal. Biochem., 238, 60-64. (Pubitemid 26196960)
18. Muller,W.E., Obermeier,J., Totsuka,A. and Zahn,R.K. (1974) Influence of template inactivators on the biding of DNA polymerases to DNA. Nucleic Acids Res., 1, 63-74.
19. Frisch,M.J. (2003) Gaussian 03. Gaussian Inc., Pittsburgh, PA.
20. Cavalli,A., De Vivo,M. and Recanatini,M. (2003) Density functional study of the enzymatic reaction catalyzed by cyclindependent kinase. Chem. Commun., 1308-1309. (Pubitemid 36649003)
21. Akola,J. and Jones,R.O. (2003) ATP hydrolysis in water-a density functional study. J. Phys. Chem. B, 107, 11774-11783.
22. Buchachenko,A.L., Kuznetsov,D.A. and Breslavskaya,N.N. (2010) Ion-radical mechanism of enzymatic ATP synthesis. J. Phys. Chem. B, 114, 2287-2292.
23. Buchachenko,A.L., Kuznetsov,D.A., Breslavskaya,N.N. and Orlova,M.A. (2008) Magnesium isotope effects in enzymatic phosphorylation. J. Phys. Chem. B, 112, 2548-2556. (Pubitemid 351362378)
24. Buchachenko,A.L. (1995) MIE versus CIE: comparative analysis of magnetic and classical isotope effects. Chem. Rev., 95, 2507-2528.
25. Buchachenko,A.L. (2001) Magnetic isotope effect: nuclear spin control of chemical reactions. J. Phys. Chem. A, 105, 9995-10011. (Pubitemid 35373233)
26. Stefanov,V.E. and Tulub,A.A. (2011) Theoretical analysis of spin-dependent synthesis of DNA/RNA. Dokl. Biochem. Biophys., 436, 38-40.
27. Tulub,A.A. (2011) Spin effects govern DNA/RNA nucleotide polymerization. J. Biophys. Chem., 2, 300-309.
28. Koltover,V.K., Korolev,V.G. and Kutlakhmedov,Y.A. (2012) Antioxidant prophylaxis of radiation stress. Ionizing Radiation: Applications, Sources and Biological Effects. Nova Science Publishers, New York, pp. 117-128.
29. Koltover,V.K. (2012) Stable magnetic isotopes as a new trend in biomedicine. Biomedicine, Rijeka, InTech, Europe, pp. 105-122. http://www.intechopen.com/books/biomedicine.
30. Koltover,V.K., Shevchenko,U.G., Avdeeva,L.V., Royba,E.A., Berdinsky,V.L. and Kudryashova,E.A. (2012) Magnetic isotope effect of magnesium in the living cell. Dokl. Biochem. Biophys., 442, 12-14.
31. Olins,A.L., Hermann,H., Lichter,P. and Olins,D.E. (2000) Retinoic acid differentiation of HL-60 cells promotes cytoskeletal polarization. Exp. Cell Res., 254, 130-142. (Pubitemid 30066739)
32. Roy,M.R., Thalang,V.N., Trakoontivakorn,G. and Nakahara,K. (2004) Mechanism of mahanine-induced apoptosis in human leukemia cells (HL-60). Biomed. Pharmacol., 67, 41-51. (Pubitemid 37518533)
33. Voss,D.O., Plaut,G.W.E., Hagihara,H. and Clendenin,J.S. (1967) Fractionation of chromatin compounds isolated from the mammalian neoplastic cell nuclei. Meth. Enzymol., 10, 326-341.
34. Lerman,M.I., Abakumova,E.V., Podobed,O.B. and Zlatopolsky,A.D. (1976) Isolation and study on the properties of the DNP-and RNP-particles from the Ehrich ascite carcinoma cells. In: Orekhovich,V.N. (ed.), Advanced Methods in Biochemistry. Meditsina Publishers, Moscow, pp. 74-89.
35. Matsumoto,Y. and Kim,K. (1995) The nuclear DNA polymerases B: activity shifts and the DNA gaps beta-elimination control. Science, 269, 699-702.
36. Piersen,C.E., Prasad,R., Wilson,S.H. and Lloyd,R.S. (1996) On the 50,30-Deoxynucleotidyl transferase catalytic activity expressed by the nuclear DNA polymerase B in Mammalian cells. J. Biol. Chem., 271, 1781-1785.
37. Bradford,M.M. (1976) An improved colorimetric technique for protein measurement. Anal. Biochem., 72, 348-354.
38. Laemmli,U.L. (1970) An efficient polyacrylamide gel electrophoresis system for proteins separation. Nature, 227, 690-695.
39. Walker,J.M. (1994) Isoelectric focusing of proteins in polyacrylamide gels. In: Walker,J.M. (ed.), Methods in Molecular Biology Series. B, Vol. Springer Verlag GmbH, Berlin, Heidelberg, pp. 59-65.
40. Katoh,R. (2011) Analytic Techniques in Biochemistry and Molecular Biology. Springer Verlag GmbH, Berlin, Heidelberg.
41. Gorg,A., Postel,W. and Westermeir,R. (1978) Ultrathin-layer isoelectric focusing in polyacrylamide gels on cellophane. Anal. Biochem., 89, 60-70. (Pubitemid 9050341)
42. Rule,G.S. (1984) Quantitative assay of deoxyribonuclease activity after isoelectric focusing in polyacrylamide gels. Anal. Biochem., 138, 99-106. (Pubitemid 14146653)