-
1
-
-
79960395328
-
Bacterial transcription terminators. The RNA3β-end chronicles
-
Peters, J. M., Vangeloff, A. D., and Landick, R. (2011) Bacterial transcription terminators. The RNA 3β-end chronicles. J. Mol. Biol. 412, 793-813
-
(2011)
J. Mol. Biol.
, vol.412
, pp. 793-813
-
-
Peters, J.M.1
Vangeloff, A.D.2
Landick, R.3
-
2
-
-
33646849728
-
Rho-dependent transcription termination
-
Banerjee, S., Chalissery, J., Bandey, I., and Sen, R. (2006) Rho-dependent transcription termination. More questions than answers. J. Microbiol. 44, 11-22
-
(2006)
More Questions Than Answers. J. Microbiol.
, vol.44
, pp. 11-22
-
-
Banerjee, S.1
Chalissery, J.2
Bandey, I.3
Sen, R.4
-
3
-
-
79954597274
-
Termination and Antitermination. RNA polymerase runs a stop sign
-
Santangelo, T. J., and Artsimovitch, I. (2011) Termination and Antitermination. RNA polymerase runs a stop sign. Nat. Rev. Microbiol. 9, 319-329
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 319-329
-
-
Santangelo, T.J.1
Artsimovitch, I.2
-
5
-
-
0029007110
-
Bipartite function of a small RNA hairpin in transcription antitermination in bacteriophage
-
Chattopadhyay, S., Garcia-Mena, J., DeVito, J., Wolska, K., and Das, A. (1995) Bipartite function of a small RNA hairpin in transcription antitermination in bacteriophage . Proc Natl. Acad Sci. U.S.A. 92, 4061-4065
-
(1995)
Proc Natl. Acad Sci. U.S.A.
, vol.92
, pp. 4061-4065
-
-
Chattopadhyay, S.1
Garcia-Mena, J.2
Devito, J.3
Wolska, K.4
Das, A.5
-
6
-
-
0024434420
-
Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine rich motif
-
Lazinski, D., Grzadzielska, E., and Das, A. (1989) Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine rich motif. Cell 59, 207-218
-
(1989)
Cell
, vol.59
, pp. 207-218
-
-
Lazinski, D.1
Grzadzielska, E.2
Das, A.3
-
7
-
-
0027453160
-
Recognition of boxA antiterminatorRNAby the E coli antitermination factors NusB and ribosomal protein S10
-
Nodwell, J.R., and Greenblatt, J. (1993) Recognition of boxA antiterminatorRNAby the E. coli antitermination factors NusB and ribosomal protein S10. Cell 72, 261-268
-
(1993)
Cell
, vol.72
, pp. 261-268
-
-
Nodwell, J.R.1
Greenblatt, J.2
-
8
-
-
0031614914
-
Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage N protein
-
Mogridge, J., Legault, P., Li, J., Van Oene, M. D., Kay, L. E., and Greenblatt, J. (1998) Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage N protein. Mol. Cell 1, 265-275
-
(1998)
Mol. Cell
, vol.1
, pp. 265-275
-
-
Mogridge, J.1
Legault, P.2
Li, J.3
Van Oene, M.D.4
Kay, L.E.5
Greenblatt, J.6
-
9
-
-
84884801518
-
-
(Böck, A., Curtiss, R., III, Kaper, J. B., Karp, P. D., Neidhardt, F. C., Nyström, T., Slauch, J. M., and Squires, C. L., eds), American Society for Microbiology Press, Washington, D. C
-
Sen, R., Chalissery, J., and Muteeb, G. (2008) Nus Factors of Escherichia coli, Module 4.5.3.1. EcoSal-Escherichia coli and Salmonella: Cellular and Molecular Biology (Böck, A., Curtiss, R., III, Kaper, J. B., Karp, P. D., Neidhardt, F. C., Nyström, T., Slauch, J. M., and Squires, C. L., eds), American Society for Microbiology Press, Washington, D. C.
-
(2008)
Nus Factors of Escherichia Coli, Module 4.5.3.1. EcoSal-Escherichia Coli and Salmonella: Cellular and Molecular Biology
-
-
Sen, R.1
Chalissery, J.2
Muteeb, G.3
-
10
-
-
69949141607
-
The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA
-
Yang, X., Molimau, S., Doherty, G. P., Johnston, E. B., Marles-Wright, J., Rothnagel, R., Hankamer, B., Lewis, R. J., Lewis, P. J. (2009) The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA. EMBO Rep. 10, 997-1002
-
(2009)
EMBO Rep.
, vol.10
, pp. 997-1002
-
-
Yang, X.1
Molimau, S.2
Doherty, G.P.3
Johnston, E.B.4
Marles-Wright, J.5
Rothnagel, R.6
Hankamer, B.7
Lewis, R.J.8
Lewis, P.J.9
-
11
-
-
77955550450
-
The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA Polymerase
-
Ha, K. S., Toulokhonov, I., Vassylyev, D. G., and Landick, R. (2010) The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA Polymerase. J. Mol. Biol. 401, 708-725
-
(2010)
J. Mol. Biol.
, vol.401
, pp. 708-725
-
-
Ha, K.S.1
Toulokhonov, I.2
Vassylyev, D.G.3
Landick, R.4
-
12
-
-
0034667947
-
The subunit of E coli RNA polymerase activates RNA binding by NusA
-
Mah, T. F., Kuznedelov, K., Mushegian, A., Severinov, K., and Greenblatt, J. (2000) The subunit of E. coli RNA polymerase activates RNA binding by NusA. Genes Dev. 14, 2664-2675
-
(2000)
Genes Dev.
, vol.14
, pp. 2664-2675
-
-
Mah, T.F.1
Kuznedelov, K.2
Mushegian, A.3
Severinov, K.4
Greenblatt, J.5
-
13
-
-
0023660679
-
NusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites
-
Schmidt, M. C., and Chamberlin, M. J. (1987) NusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites. J. Mol. Biol. 195, 809-818
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 809-818
-
-
Schmidt, M.C.1
Chamberlin, M.J.2
-
14
-
-
0035900642
-
Control of intrinsic transcription termination by N and NusA
-
Gusarov, I., and Nudler, E. (2001) Control of intrinsic transcription termination by N and NusA. The basic mechanisms. Cell 107, 437-449
-
(2001)
The Basic Mechanisms. Cell
, vol.107
, pp. 437-449
-
-
Gusarov, I.1
Nudler, E.2
-
15
-
-
0019942479
-
Effects of NusA protein transcription termination in the tryptophan operon of Escherichia coli
-
Farnham, P.J., Greenblatt, J., and Platt, T. (1982) Effects of NusA protein transcription termination in the tryptophan operon of Escherichia coli. Cell 29, 945-951
-
(1982)
Cell
, vol.29
, pp. 945-951
-
-
Farnham, P.J.1
Greenblatt, J.2
Platt, T.3
-
16
-
-
0021099873
-
RNA polymerase pausing and transcript release at the tR1 terminator in vitro
-
Lau, L.F., Roberts, J.W., and Wu, R. (1983) RNA polymerase pausing and transcript release at the tR1 terminator in vitro. J. Biol. Chem. 258, 9391-9397
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 9391-9397
-
-
Lau, L.F.1
Roberts, J.W.2
Wu, R.3
-
17
-
-
0023721890
-
Nus A protein affects transcrip-tional pausing and termination in vitro by binding to different sites on the transcription complex
-
Sigmund, C. D., and Morgan, E. A. (1988) Nus A protein affects transcrip-tional pausing and termination in vitro by binding to different sites on the transcription complex. Biochemistry, 27, 5622-5627
-
(1988)
Biochemistry
, vol.27
, pp. 5622-5627
-
-
Sigmund, C.D.1
Morgan, E.A.2
-
18
-
-
0032747748
-
Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage N protein and RNA
-
Mah, T. F., Li, J., Davidson, A. R., and Greenblatt, J. (1999) Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage N protein and RNA. Mol. Microbiol. 34, 523-537
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 523-537
-
-
Mah, T.F.1
Li, J.2
Davidson, A.R.3
Greenblatt, J.4
-
19
-
-
84871209292
-
A multi-pronged strategy of an antiterminator protein to overcome Rho-dependent transcription termination
-
Muteeb, G., Dey, D., Mishra, S., and Sen, R. (2012) A multi-pronged strategy of an antiterminator protein to overcome Rho-dependent transcription termination. Nucleic Acids Res. 40, 11213-11228
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 11213-11228
-
-
Muteeb, G.1
Dey, D.2
Mishra, S.3
Sen, R.4
-
20
-
-
84855440257
-
Random mutagenesis using a mutator strain
-
Muteeb, G., and Sen, R. (2010) Random mutagenesis using a mutator strain. Methods Mol. Biol. 634, 411-419
-
(2010)
Methods Mol. Biol.
, vol.634
, pp. 411-419
-
-
Muteeb, G.1
Sen, R.2
-
21
-
-
0028108756
-
Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli
-
Zheng, C., and Friedman, D. I. (1994) Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 91, 7543-7547
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 7543-7547
-
-
Zheng, C.1
Friedman, D.I.2
-
22
-
-
34548667500
-
Transcription termination defective mutants of Rho. Role of different functions of rho in releasing RNA from the elongation complex
-
Chalissery, J., Banerjee, S., Bandey, I., and Sen, R. (2007) Transcription termination defective mutants of Rho. Role of different functions of Rho in releasing RNA from the elongation complex. J. Mol. Biol. 371, 855-872
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 855-872
-
-
Chalissery, J.1
Banerjee, S.2
Bandey, I.3
Sen, R.4
-
23
-
-
23944518352
-
Escherichia coli RNA polymerase mutations located near the upstream edge of an RNA. DNA hybrid and the beginning of the RNA-exit channel are defective for transcription antitermination by the N protein from lambdoid phage H-19B
-
Cheeran, A., Babu Suganthan, R., Swapna, G., Bandey, I., Achary, M. S., Nagarajaram, H. A., and Sen, R. (2005) Escherichia coli RNA polymerase mutations located near the upstream edge of an RNA. DNA hybrid and the beginning of the RNA-exit channel are defective for transcription antitermination by the N protein from lambdoid phage H-19B. J. Mol. Biol. 352, 28-43
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 28-43
-
-
Cheeran, A.1
Babu Suganthan, R.2
Swapna, G.3
Bandey, I.4
Achary, M.S.5
Nagarajaram, H.A.6
Sen, R.7
-
24
-
-
4644245147
-
Structural basis for the interaction of Escherichia coli NusA with protein N of phage
-
Bonin, I., Mühlberger, R., Bourenkov, G. P., Huber, R., Bacher, A., Richter, G., and Wahl, M. C. (2004) Structural basis for the interaction of Escherichia coli NusA with protein N of phage . Proc. Natl. Acad. Sci. U.S.A. 101, 13762-13767
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 13762-13767
-
-
Bonin, I.1
Mühlberger, R.2
Bourenkov, G.P.3
Huber, R.4
Bacher, A.5
Richter, G.6
Wahl, M.C.7
-
25
-
-
33645653047
-
Interaction of the intrinsically unstructured phage NProtein with Escherichia coli NusA
-
Prasch S, Schwarz S, Eisenmann A, Wöhrl BM, Schweimer K, Rösch P. (2006) Interaction of the intrinsically unstructured phage NProtein with Escherichia coli NusA. Biochemistry 45, 4542-4549
-
(2006)
Biochemistry
, vol.45
, pp. 4542-4549
-
-
Prasch, S.1
Schwarz, S.2
Eisenmann, A.3
Wöhrl, B.M.4
Schweimer, K.5
Rösch, P.6
-
26
-
-
0030710554
-
Assembly of the N-dependent antitermination complex of phage . NusA and RNA bind independently to different unfolded domains of the N protein
-
Van Gilst, M. R., and von Hippel, P. H. (1997) Assembly of the N-dependent antitermination complex of phage . NusA and RNA bind independently to different unfolded domains of the N protein. J. Mol. Biol. 274, 160-173
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 160-173
-
-
Van Gilst, M.R.1
Von Hippel, P.H.2
-
27
-
-
0034533887
-
N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors
-
Neely, M. N., and Friedman, D. I. (2000) N-mediated transcription antitermination in lambdoid phage H-19B is characterized by alternative NUT RNA structures and a reduced requirement for host factors. Mol. Microbiol. 38, 1074-1085
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 1074-1085
-
-
Neely, M.N.1
Friedman, D.I.2
-
28
-
-
0015985734
-
Genetic characterization of a bacterial locus involved in the activity of the N function of phage
-
Friedman, D. I., and Baron, L. S. (1974) Genetic characterization of a bacterial locus involved in the activity of the N function of phage . Virology 58, 141-148
-
(1974)
Virology
, vol.58
, pp. 141-148
-
-
Friedman, D.I.1
Baron, L.S.2
-
29
-
-
0035967918
-
Interactions of an Arg-rich region of transcription elongation protein NusA with NUT RNA. Implications for the order of assembly of the N antitermination complex in vivo
-
Zhou, Y., Mah, T. F., Yu, Y. T., Mogridge, J., Olson, E. R., Greenblatt, J., and Friedman, D. I. (2001) Interactions of an Arg-rich region of transcription elongation protein NusA with NUT RNA. Implications for the order of assembly of the N antitermination complex in vivo. J. Mol. Biol. 310, 33-49
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 33-49
-
-
Zhou, Y.1
Mah, T.F.2
Yu, Y.T.3
Mogridge, J.4
Olson, E.R.5
Greenblatt, J.6
Friedman, D.I.7
-
30
-
-
0036314901
-
Evidence that the KH RNA-binding domains influence the action of the e
-
Zhou, Y., Mah, T. F., Greenblatt, J., and Friedman, D. I. (2002) Evidence that the KH RNA-binding domains influence the action of the E. coli NusA protein. J. Mol. Biol. 318, 1175-1188
-
(2002)
Coli NusA Protein. J. Mol. Biol.
, vol.318
, pp. 1175-1188
-
-
Zhou, Y.1
Mah, T.F.2
Greenblatt, J.3
Friedman, D.I.4
-
31
-
-
27144547978
-
Structure of a Mycobacterium tuberculosis NusA-RNA complex
-
Beuth, B., Pennell, S., Arnvig, K. B., Martin, S. R., and Taylor, I. A. (2005) Structure of a Mycobacterium tuberculosis NusA-RNA complex. EMBO J. 24, 3576-3587
-
(2005)
EMBO J.
, vol.24
, pp. 3576-3587
-
-
Beuth, B.1
Pennell, S.2
Arnvig, K.B.3
Martin, S.R.4
Taylor, I.A.5
-
32
-
-
79958701958
-
NusA interaction with the subunit of E coli RNA polymerase is via the UP element site and releases autoinhibition
-
Schweimer, K., Prasch, S., Sujatha, P. S., Bubunenko, M., Gottesman, M. E., and Rösch, P. (2011). NusA interaction with the subunit of E. coli RNA polymerase is via the UP element site and releases autoinhibition. Structure 19, 945-954
-
(2011)
Structure
, vol.19
, pp. 945-954
-
-
Schweimer, K.1
Prasch, S.2
Sujatha, P.S.3
Bubunenko, M.4
Gottesman, M.E.5
Rösch, P.6
-
33
-
-
35648988977
-
The site of action of the antiterminator protein N from the Lambdoid Phage H-19B
-
Cheeran, A., Kolli, N. R., and Sen, R. (2007) The site of action of the antiterminator protein N from the Lambdoid Phage H-19B. J. Biol. Chem. 282, 30997-31007
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 30997-31007
-
-
Cheeran, A.1
Kolli, N.R.2
Sen, R.3
-
34
-
-
34748854260
-
A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript
-
Shankar, S., Hatoum, A., Roberts, J. (2007) A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript. Mol. Cell 27, 914-927
-
(2007)
Mol. Cell
, vol.27
, pp. 914-927
-
-
Shankar, S.1
Hatoum, A.2
Roberts, J.3
-
35
-
-
0036033732
-
Sequence-specific interaction of nascent antiterminator RNA with the zinc-finger motif of Escherichia coli RNA polymerase
-
Sen, R., King, R. A., Mzhavia, N., Madsen, P. L., Weisberg, R. A. (2002) Sequence-specific interaction of nascent antiterminator RNA with the zinc-finger motif of Escherichia coli RNA polymerase. Mol. Microbiol. 46, 215-222
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 215-222
-
-
Sen, R.1
King, R.A.2
Mzhavia, N.3
Madsen, P.L.4
Weisberg, R.A.5
-
36
-
-
84861366862
-
A novel phage-encoded transcription antiterminator acts by suppressing bacterial RNA polymerase pausing
-
Berdygulova, Z., Esyunina, D., Miropolskaya, N., Mukhamedyarov, D., Kuznedelov, K., Nickels, B. E., Severinov, K., Kulbachinskiy, A., and Minakhin, L. (2012) A novel phage-encoded transcription antiterminator acts by suppressing bacterial RNA polymerase pausing. Nucleic Acids Res. 40, 4052-4063
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4052-4063
-
-
Berdygulova, Z.1
Esyunina, D.2
Miropolskaya, N.3
Mukhamedyarov, D.4
Kuznedelov, K.5
Nickels, B.E.6
Severinov, K.7
Kulbachinskiy, A.8
Minakhin, L.9
-
37
-
-
77957921869
-
Complete structural model of Escherichia coli RNA polymerase from a hybrid approach
-
Opalka N., Brown J., Lane W. J., Twist K. A., Landick, R., Asturias, F. J., Darst, S.A. (2010). Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. Plos Biol. 8, e1000483
-
(2010)
Plos Biol.
, vol.8
-
-
Opalka, N.1
Brown, J.2
Lane, W.J.3
Twist, K.A.4
Landick, R.5
Asturias, F.J.6
Darst, S.A.7
-
38
-
-
0031746606
-
Functional and genetic analysis of regulatory regions of coliphage H-19B. Location of shiga like toxin and lysis genes suggest a role for phage functions in toxin release
-
Neely, M. N., and Friedman, D. I. (1998) Functional and genetic analysis of regulatory regions of coliphage H-19B. Location of shiga like toxin and lysis genes suggest a role for phage functions in toxin release. Mol. Microbiol. 28, 1255-1267
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1255-1267
-
-
Neely, M.N.1
Friedman, D.I.2
|