-
1
-
-
0036006035
-
Simultaneous suppression of multiple genes by single transgenes. Down-regulation of three unrelated lignin biosynthetic genes in tobacco
-
Abbott, J.C., Barakate, A., Pinçon, G., Legrand, M., Lapierre, C., Mila, I., Schuch, W., and Halpin, C. (2002). Simultaneous suppression of multiple genes by single transgenes. Down-regulation of three unrelated lignin biosynthetic genes in tobacco. Plant Physiol. 128: 844-853.
-
(2002)
Plant Physiol.
, vol.128
, pp. 844-853
-
-
Abbott, J.C.1
Barakate, A.2
Pinçon, G.3
Legrand, M.4
Lapierre, C.5
Mila, I.6
Schuch, W.7
Halpin, C.8
-
2
-
-
0037327487
-
Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis
-
Abe, M., Katsumata, H., Komeda, Y., and Takahashi, T. (2003). Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Development 130: 635-643.
-
(2003)
Development
, vol.130
, pp. 635-643
-
-
Abe, M.1
Katsumata, H.2
Komeda, Y.3
Takahashi, T.4
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
33646185558
-
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species
-
Alvarez, J.P., Pekker, I., Goldshmidt, A., Blum, E., Amsellem, Z., and Eshed, Y. (2006). Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151.
-
(2006)
Plant Cell
, vol.18
, pp. 1134-1151
-
-
Alvarez, J.P.1
Pekker, I.2
Goldshmidt, A.3
Blum, E.4
Amsellem, Z.5
Eshed, Y.6
-
5
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
6
-
-
77951474125
-
Target mRNA abundance dilutes microRNA and siRNA activity
-
Arvey, A., Larsson, E., Sander, C., Leslie, C.S., and Marks, D.S. (2010). Target mRNA abundance dilutes microRNA and siRNA activity. Mol. Syst. Biol. 6: 363.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 363
-
-
Arvey, A.1
Larsson, E.2
Sander, C.3
Leslie, C.S.4
Marks, D.S.5
-
7
-
-
58149307466
-
QuantPrime-A flexible tool for reliable highthroughput primer design for quantitative PCR
-
Arvidsson, S., Kwasniewski, M., Riaño-Pachón, D.M., and Mueller-Roeber, B. (2008). QuantPrime-A flexible tool for reliable highthroughput primer design for quantitative PCR. BMC Bioinformatics 9: 465.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 465
-
-
Arvidsson, S.1
Kwasniewski, M.2
Riaño-Pachón, D.M.3
Mueller-Roeber, B.4
-
8
-
-
70349868186
-
Plasma membrane-associated proline-rich extensin-like receptor kinase 4, a novel regulator of Ca signalling, is required for abscisic acid responses in Arabidopsis thaliana
-
Bai, L., Zhang, G., Zhou, Y., Zhang, Z., Wang, W., Du, Y., Wu, Z., and Song, C.-P. (2009). Plasma membrane-associated proline-rich extensin-like receptor kinase 4, a novel regulator of Ca signalling, is required for abscisic acid responses in Arabidopsis thaliana. Plant J. 60: 314-327.
-
(2009)
Plant J.
, vol.60
, pp. 314-327
-
-
Bai, L.1
Zhang, G.2
Zhou, Y.3
Zhang, Z.4
Wang, W.5
Du, Y.6
Wu, Z.7
Song, C.-P.8
-
9
-
-
0035112091
-
Arabidopsis gene knockout: Phenotypes wanted
-
Bouché, N., and Bouchez, D. (2001). Arabidopsis gene knockout: Phenotypes wanted. Curr. Opin. Plant Biol. 4: 111-117.
-
(2001)
Curr. Opin. Plant Biol.
, vol.4
, pp. 111-117
-
-
Bouché, N.1
Bouchez, D.2
-
10
-
-
0025753467
-
Genetic interactions among floral homeotic genes of Arabidopsis
-
Bowman, J.L., Smyth, D.R., and Meyerowitz, E.M. (1991). Genetic interactions among floral homeotic genes of Arabidopsis. Development 112: 1-20.
-
(1991)
Development
, vol.112
, pp. 1-20
-
-
Bowman, J.L.1
Smyth, D.R.2
Meyerowitz, E.M.3
-
11
-
-
34848846589
-
Unequal genetic redundancies in Arabidopsis-A neglected phenomenon?
-
Briggs, G.C., Osmont, K.S., Shindo, C., Sibout, R., and Hardtke, C.S. (2006). Unequal genetic redundancies in Arabidopsis-A neglected phenomenon? Trends Plant Sci. 11: 492-498.
-
(2006)
Trends Plant Sci.
, vol.11
, pp. 492-498
-
-
Briggs, G.C.1
Osmont, K.S.2
Shindo, C.3
Sibout, R.4
Hardtke, C.S.5
-
12
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen, P., Sakvarelidze-Achard, L., Bruun-Rasmussen, M., Dunoyer, P., Yamamoto, Y.Y., Sieburth, L., and Voinnet, O. (2008). Widespread translational inhibition by plant miRNAs and siRNAs. Science 320: 1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
13
-
-
49549118253
-
Efficient functional clustering of protein sequences using the Dirichlet process
-
Brown, D.P. (2008). Efficient functional clustering of protein sequences using the Dirichlet process. Bioinformatics 24: 1765-1771.
-
(2008)
Bioinformatics
, vol.24
, pp. 1765-1771
-
-
Brown, D.P.1
-
14
-
-
20844438492
-
Production of complex nucleic acid libraries using highly parallel in situ oligonucleotide synthesis
-
Cleary, M.A., et al. (2004). Production of complex nucleic acid libraries using highly parallel in situ oligonucleotide synthesis. Nat. Methods 1: 241-248.
-
(2004)
Nat. Methods
, vol.1
, pp. 241-248
-
-
Cleary, M.A.1
-
15
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
16
-
-
38449100072
-
The Protein Identifier Cross-Referencing (PICR) service: Reconciling protein identifiers across multiple source databases
-
Côté, R.G., Jones, P., Martens, L., Kerrien, S., Reisinger, F., Lin, Q., Leinonen, R., Apweiler, R., and Hermjakob, H. (2007). The Protein Identifier Cross-Referencing (PICR) service: Reconciling protein identifiers across multiple source databases. BMC Bioinformatics 8: 401.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 401
-
-
Côté, R.G.1
Jones, P.2
Martens, L.3
Kerrien, S.4
Reisinger, F.5
Lin, Q.6
Leinonen, R.7
Apweiler, R.8
Hermjakob, H.9
-
18
-
-
26944465400
-
Dude, where's my phenotype? Dealing with redundancy in signaling networks
-
Cutler, S., and McCourt, P. (2005). Dude, where's my phenotype? Dealing with redundancy in signaling networks. Plant Physiol. 138: 558-559.
-
(2005)
Plant Physiol.
, vol.138
, pp. 558-559
-
-
Cutler, S.1
McCourt, P.2
-
19
-
-
1942475192
-
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: Unprecedented sensitivity reveals novel rootand shoot-specific genes
-
Czechowski, T., Bari, R.P., Stitt, M., Scheible, W.-R., and Udvardi, M.K. (2004). Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: Unprecedented sensitivity reveals novel rootand shoot-specific genes. Plant J. 38: 366-379.
-
(2004)
Plant J.
, vol.38
, pp. 366-379
-
-
Czechowski, T.1
Bari, R.P.2
Stitt, M.3
Scheible, W.-R.4
Udvardi, M.K.5
-
20
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
-
Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K., and Scheible, W.-R. (2005). Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17.
-
(2005)
Plant Physiol.
, vol.139
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.-R.5
-
21
-
-
41449101853
-
MPI for Python: Performance improvements and MPI-2 extensions
-
Dalcin, L., Paz, R., Storti, M., and D'Elia, J. (2008). MPI for Python: Performance improvements and MPI-2 extensions. J. Parallel Distrib. Comput. 68: 655-662.
-
(2008)
J. Parallel Distrib. Comput.
, vol.68
, pp. 655-662
-
-
Dalcin, L.1
Paz, R.2
Storti, M.3
D'Elia, J.4
-
22
-
-
66449106080
-
The evolutionary context of robust and redundant cell biological mechanisms
-
Delattre, M., and Félix, M.-A. (2009). The evolutionary context of robust and redundant cell biological mechanisms. Bioessays 31: 537-545.
-
(2009)
Bioessays
, vol.31
, pp. 537-545
-
-
Delattre, M.1
Félix, M.-A.2
-
23
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright, A.J., Van Dongen, S., and Ouzounis, C.A. (2002). An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30: 1575-1584.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
24
-
-
0028112417
-
Mutations at two new Arabidopsis ABA response loci are similar to the abi3 mutations
-
Finkelstein, R. (1994). Mutations at two new Arabidopsis ABA response loci are similar to the abi3 mutations. Plant J. 5: 765-771.
-
(1994)
Plant J.
, vol.5
, pp. 765-771
-
-
Finkelstein, R.1
-
25
-
-
0034106785
-
The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor
-
Finkelstein, R.R., and Lynch, T.J. (2000). The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell 12: 599-609.
-
(2000)
Plant Cell
, vol.12
, pp. 599-609
-
-
Finkelstein, R.R.1
Lynch, T.J.2
-
26
-
-
0014276538
-
Nutrient requirements of suspension cultures of soybean root cells
-
Gamborg, O.L., Miller, R.A., and Ojima, K. (1968). Nutrient requirements of suspension cultures of soybean root cells. Exp. Cell Res. 50: 151-158.
-
(1968)
Exp. Cell Res.
, vol.50
, pp. 151-158
-
-
Gamborg, O.L.1
Miller, R.A.2
Ojima, K.3
-
27
-
-
42149096493
-
The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis
-
Gao, L., and Xiang, C.-B. (2008). The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis. Plant Mol. Biol. 67: 125-134.
-
(2008)
Plant Mol. Biol.
, vol.67
, pp. 125-134
-
-
Gao, L.1
Xiang, C.-B.2
-
28
-
-
19044393068
-
TAIR: A resource for integrated Arabidopsis data
-
Garcia-Hernandez, M., et al. (2002). TAIR: A resource for integrated Arabidopsis data. Funct. Integr. Genomics 2: 239-253.
-
(2002)
Funct. Integr. Genomics
, vol.2
, pp. 239-253
-
-
Garcia-Hernandez, M.1
-
29
-
-
47749083127
-
The AtGenExpress hormone and chemical treatment data set: Experimental design, data evaluation, model data analysis and data access
-
Goda, H., et al. (2008). The AtGenExpress hormone and chemical treatment data set: Experimental design, data evaluation, model data analysis and data access. Plant J. 55: 526-542.
-
(2008)
Plant J.
, vol.55
, pp. 526-542
-
-
Goda, H.1
-
30
-
-
33846085927
-
SUBA: The Arabidopsis Subcellular Database
-
DATABASE ISSUE
-
Heazlewood, J.L., Verboom, R.E., Tonti-Filippini, J., Small, I., and Millar, A.H. (2007). SUBA: The Arabidopsis Subcellular Database. Nucleic Acids Res. 35 (Database issue): D213-D218.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Heazlewood, J.L.1
Verboom, R.E.2
Tonti-Filippini, J.3
Small, I.4
Millar, A.H.5
-
31
-
-
29544452408
-
BLADE-ON-PETIOLE-dependent signaling controls leaf and floral patterning in Arabidopsis
-
Hepworth, S.R., Zhang, Y., McKim, S., Li, X., and Haughn, G.W. (2005). BLADE-ON-PETIOLE-dependent signaling controls leaf and floral patterning in Arabidopsis. Plant Cell 17: 1434-1448.
-
(2005)
Plant Cell
, vol.17
, pp. 1434-1448
-
-
Hepworth, S.R.1
Zhang, Y.2
McKim, S.3
Li, X.4
Haughn, G.W.5
-
32
-
-
0035861897
-
Guard cell signaling
-
Hetherington, A.M. (2001). Guard cell signaling. Cell 107: 711-714.
-
(2001)
Cell
, vol.107
, pp. 711-714
-
-
Hetherington, A.M.1
-
33
-
-
33845523291
-
The FOX hunting system: An alternative gain-of-function gene hunting technique
-
Ichikawa, T., et al. (2006). The FOX hunting system: An alternative gain-of-function gene hunting technique. Plant J. 48: 974-985.
-
(2006)
Plant J.
, vol.48
, pp. 974-985
-
-
Ichikawa, T.1
-
34
-
-
0037685280
-
Expression profiling reveals off-target gene regulation by RNAi
-
Jackson, A.L., Bartz, S.R., Schelter, J., Kobayashi, S.V., Burchard, J., Mao, M., Li, B., Cavet, G., and Linsley, P.S. (2003). Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotechnol. 21: 635-637.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 635-637
-
-
Jackson, A.L.1
Bartz, S.R.2
Schelter, J.3
Kobayashi, S.V.4
Burchard, J.5
Mao, M.6
Li, B.7
Cavet, G.8
Linsley, P.S.9
-
35
-
-
0036516002
-
bZIP transcription factors in Arabidopsis
-
bZIP Research Group
-
Jakoby, M., Weisshaar, B., Dröge-Laser, W., Vicente-Carbajosa, J., Tiedemann, J., Kroj, T., Parcy, F.; bZIP Research Group (2002). bZIP transcription factors in Arabidopsis. Trends Plant Sci. 7: 106-111.
-
(2002)
Trends Plant Sci
, vol.7
, pp. 106-111
-
-
Jakoby, M.1
Weisshaar, B.2
Dröge-Laser, W.3
Vicente-Carbajosa, J.4
Tiedemann, J.5
Kroj, T.6
Parcy, F.7
-
36
-
-
73949100728
-
MAP kinasesMPK9 andMPK12 are preferentially expressed in guard cells and positively regulate ROS-mediated ABA signaling
-
Jammes, F., et al. (2009). MAP kinasesMPK9 andMPK12 are preferentially expressed in guard cells and positively regulate ROS-mediated ABA signaling. Proc. Natl. Acad. Sci. USA 106: 20520-20525.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 20520-20525
-
-
Jammes, F.1
-
37
-
-
59049099861
-
Genetic redundancy: New tricks for old genes
-
Kafri, R., Springer, M., and Pilpel, Y. (2009). Genetic redundancy: New tricks for old genes. Cell 136: 389-392.
-
(2009)
Cell
, vol.136
, pp. 389-392
-
-
Kafri, R.1
Springer, M.2
Pilpel, Y.3
-
38
-
-
79960140537
-
linkcomm: An R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type
-
Kalinka, A.T., and Tomancak, P. (2011). linkcomm: An R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27: 2011-2012.
-
(2011)
Bioinformatics
, vol.27
, pp. 2011-2012
-
-
Kalinka, A.T.1
Tomancak, P.2
-
39
-
-
13444304365
-
Integr8 and Genome Reviews: Integrated views of complete genomes and proteomes
-
DATABASE ISSUE
-
Kersey, P., et al. (2005). Integr8 and Genome Reviews: Integrated views of complete genomes and proteomes. Nucleic Acids Res. 33 (Database issue): D297-D302.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Kersey, P.1
-
40
-
-
28944435369
-
Phylogeny and domain evolution in the APETALA2-like gene family
-
Kim, S., Soltis, P.S., Wall, K., and Soltis, D.E. (2006). Phylogeny and domain evolution in the APETALA2-like gene family. Mol. Biol. Evol. 23: 107-120.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 107-120
-
-
Kim, S.1
Soltis, P.S.2
Wall, K.3
Soltis, D.E.4
-
41
-
-
79958069055
-
Chemical genetics reveals negative regulation of abscisic acid signaling by a plant immune response pathway
-
Kim, T.H., et al. (2011). Chemical genetics reveals negative regulation of abscisic acid signaling by a plant immune response pathway. Curr. Biol. 21: 990-997.
-
(2011)
Curr. Biol.
, vol.21
, pp. 990-997
-
-
Kim, T.H.1
-
43
-
-
0001200134
-
The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector
-
Koncz, C., and Schell, J. (1986). The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol. Genet. Genomics 204: 383-396.
-
(1986)
Mol. Genet. Genomics
, vol.204
, pp. 383-396
-
-
Koncz, C.1
Schell, J.2
-
44
-
-
0025886455
-
A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana
-
Koornneef, M., Hanhart, C.J., and van der Veen, J.H. (1991). A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol. Gen. Genet. 229: 57-66.
-
(1991)
Mol. Gen. Genet.
, vol.229
, pp. 57-66
-
-
Koornneef, M.1
Hanhart, C.J.2
van der Veen, J.H.3
-
45
-
-
33645808491
-
The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis, and effects of abh1 on AtPP2CA mRNA
-
Kuhn, J.M., Boisson-Dernier, A., Dizon, M.B., Maktabi, M.H., and Schroeder, J.I. (2006). The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis, and effects of abh1 on AtPP2CA mRNA. Plant Physiol. 140: 127-139.
-
(2006)
Plant Physiol.
, vol.140
, pp. 127-139
-
-
Kuhn, J.M.1
Boisson-Dernier, A.2
Dizon, M.B.3
Maktabi, M.H.4
Schroeder, J.I.5
-
46
-
-
35748959369
-
The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins
-
Kumar, R., Kushalappa, K., Godt, D., Pidkowich, M.S., Pastorelli, S., Hepworth, S.R., and Haughn, G.W. (2007). The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins. Plant Cell 19: 2719-2735.
-
(2007)
Plant Cell
, vol.19
, pp. 2719-2735
-
-
Kumar, R.1
Kushalappa, K.2
Godt, D.3
Pidkowich, M.S.4
Pastorelli, S.5
Hepworth, S.R.6
Haughn, G.W.7
-
47
-
-
0037507299
-
NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis
-
Kwak, J.M., Mori, I.C., Pei, Z.-M., Leonhardt, N., Torres, M.A., Dangl, J.L., Bloom, R.E., Bodde, S., Jones, J.D.G., and Schroeder, J.I. (2003). NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis. EMBOJ. 22: 2623-2633.
-
(2003)
EMBOJ.
, vol.22
, pp. 2623-2633
-
-
Kwak, J.M.1
Mori, I.C.2
Pei, Z.-M.3
Leonhardt, N.4
Torres, M.A.5
Dangl, J.L.6
Bloom, R.E.7
Bodde, S.8
Jones, J.D.G.9
Schroeder, J.I.10
-
48
-
-
78449310037
-
mRNA turnover rate limits siRNA and microRNA efficacy
-
Larsson, E., Sander, C., and Marks, D. (2010). mRNA turnover rate limits siRNA and microRNA efficacy. Mol. Syst. Biol. 6: 433.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 433
-
-
Larsson, E.1
Sander, C.2
Marks, D.3
-
49
-
-
0035007091
-
Analysis of the function of two circadian-regulated CONSTANSLIKE genes
-
Ledger, S., Strayer, C., Ashton, F., Kay, S.A., and Putterill, J. (2001). Analysis of the function of two circadian-regulated CONSTANSLIKE genes. Plant J. 26: 15-22.
-
(2001)
Plant J.
, vol.26
, pp. 15-22
-
-
Ledger, S.1
Strayer, C.2
Ashton, F.3
Kay, S.A.4
Putterill, J.5
-
50
-
-
1542542442
-
Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant
-
Leonhardt, N., Kwak, J.M., Robert, N., Waner, D., Leonhardt, G., and Schroeder, J.I. (2004). Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. Plant Cell 16: 596-615.
-
(2004)
Plant Cell
, vol.16
, pp. 596-615
-
-
Leonhardt, N.1
Kwak, J.M.2
Robert, N.3
Waner, D.4
Leonhardt, G.5
Schroeder, J.I.6
-
51
-
-
84855191673
-
Roles of mitogen-activated protein kinase cascades in ABA signaling
-
Liu, Y. (2012). Roles of mitogen-activated protein kinase cascades in ABA signaling. Plant Cell Rep. 31: 1-12.
-
(2012)
Plant Cell Rep.
, vol.31
, pp. 1-12
-
-
Liu, Y.1
-
52
-
-
84857950845
-
A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis
-
Lloyd, J., and Meinke, D. (2012). A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis. Plant Physiol. 158: 1115-1129.
-
(2012)
Plant Physiol.
, vol.158
, pp. 1115-1129
-
-
Lloyd, J.1
Meinke, D.2
-
53
-
-
82055164092
-
ViennaRNA package 2.0
-
Lorenz, R., Bernhart, S.H., Höner Zu Siederdissen, C., Tafer, H., Flamm, C., Stadler, P.F., and Hofacker, I.L. (2011). ViennaRNA package 2.0. Algorithms Mol. Biol. 6: 26.
-
(2011)
Algorithms Mol. Biol.
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Höner Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
Hofacker, I.L.7
-
54
-
-
0037180501
-
Mitogen-activated protein kinase signaling in postgermination arrest of development by abscisic acid
-
Lu, C., Han, M.-H., Guevara-Garcia, A., and Fedoroff, N.V. (2002). Mitogen-activated protein kinase signaling in postgermination arrest of development by abscisic acid. Proc. Natl. Acad. Sci. USA 99: 15812-15817.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15812-15817
-
-
Lu, C.1
Han, M.-H.2
Guevara-Garcia, A.3
Fedoroff, N.V.4
-
55
-
-
0040768065
-
-
(Cold Spring Harbor, NY; Cold Spring Harbor Laboratory Press)
-
Maniatis, T., Fritsch, E., and Sambrook, J. (1982). Molecular Cloning: A Laboratory Manual. (Cold Spring Harbor, NY; Cold Spring Harbor Laboratory Press).
-
(1982)
Molecular Cloning: A Laboratory Manual
-
-
Maniatis, T.1
Fritsch, E.2
Sambrook, J.3
-
56
-
-
58149193245
-
Kinomer v. 1.0: A database of systematically classified eukaryotic protein kinases
-
DATABASE ISSUE
-
Martin, D.M.A., Miranda-Saavedra, D., and Barton, G.J. (2009). Kinomer v. 1.0: A database of systematically classified eukaryotic protein kinases. Nucleic Acids Res. 37 (Database issue): D244-D250.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Martin, D.M.A.1
Miranda-Saavedra, D.2
Barton, G.J.3
-
57
-
-
79960736190
-
CRES-T, an effective gene silencing system utilizing chimeric repressors
-
Mitsuda, N., Matsui, K., Ikeda, M., Nakata, M., Oshima, Y., Nagatoshi, Y., and Ohme-Takagi, M. (2011). CRES-T, an effective gene silencing system utilizing chimeric repressors. Methods Mol. Biol. 754: 87-105.
-
(2011)
Methods Mol. Biol.
, vol.754
, pp. 87-105
-
-
Mitsuda, N.1
Matsui, K.2
Ikeda, M.3
Nakata, M.4
Oshima, Y.5
Nagatoshi, Y.6
Ohme-Takagi, M.7
-
58
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
Mulder, N.J., et al. (2003). The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31: 315-318.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
-
59
-
-
84982358134
-
A revised medium for rapid growth and bio assays with tobacco tissue cultures
-
Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol. Plant. 15: 473-497.
-
(1962)
Physiol. Plant.
, vol.15
, pp. 473-497
-
-
Murashige, T.1
Skoog, F.2
-
60
-
-
78249288758
-
Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development
-
Murmu, J., Bush, M.J., DeLong, C., Li, S., Xu, M., Khan, M., Malcolmson, C., Fobert, P.R., Zachgo, S., and Hepworth, S.R. (2010). Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development. Plant Physiol. 154: 1492-1504.
-
(2010)
Plant Physiol.
, vol.154
, pp. 1492-1504
-
-
Murmu, J.1
Bush, M.J.2
DeLong, C.3
Li, S.4
Xu, M.5
Khan, M.6
Malcolmson, C.7
Fobert, P.R.8
Zachgo, S.9
Hepworth, S.R.10
-
61
-
-
27144474564
-
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
-
Nagpal, P., Ellis, C.M., Weber, H., Ploense, S.E., Barkawi, L.S., Guilfoyle, T.J., Hagen, G., Alonso, J.M., Cohen, J.D., Farmer, E.E., Ecker, J.R., and Reed, J.W. (2005). Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132: 4107-4118.
-
(2005)
Development
, vol.132
, pp. 4107-4118
-
-
Nagpal, P.1
Ellis, C.M.2
Weber, H.3
Ploense, S.E.4
Barkawi, L.S.5
Guilfoyle, T.J.6
Hagen, G.7
Alonso, J.M.8
Cohen, J.D.9
Farmer, E.E.10
Ecker, J.R.11
Reed, J.W.12
-
62
-
-
77950452042
-
Linking genotype to phenotype using the Arabidopsis unimutant collection
-
O'Malley, R.C., and Ecker, J.R. (2010). Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J. 61: 928-940.
-
(2010)
Plant J.
, vol.61
, pp. 928-940
-
-
O'Malley, R.C.1
Ecker, J.R.2
-
63
-
-
38949151063
-
Gene silencing in plants using artificial microRNAs and other small RNAs
-
Ossowski, S., Schwab, R., and Weigel, D. (2008). Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J. 53: 674-690.
-
(2008)
Plant J.
, vol.53
, pp. 674-690
-
-
Ossowski, S.1
Schwab, R.2
Weigel, D.3
-
64
-
-
20144379269
-
Symbiotic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development
-
Ott, T., van Dongen, J.T., Günther, C., Krusell, L., Desbrosses, G., Vigeolas, H., Bock, V., Czechowski, T., Geigenberger, P., and Udvardi, M.K. (2005). Symbiotic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development. Curr. Biol. 15: 531-535.
-
(2005)
Curr. Biol.
, vol.15
, pp. 531-535
-
-
Ott, T.1
van Dongen, J.T.2
Günther, C.3
Krusell, L.4
Desbrosses, G.5
Vigeolas, H.6
Bock, V.7
Czechowski, T.8
Geigenberger, P.9
Udvardi, M.K.10
-
65
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
Palatnik, J.F., Allen, E., Wu, X., Schommer, C., Schwab, R., Carrington, J.C., and Weigel, D. (2003). Control of leaf morphogenesis by microRNAs. Nature 425: 257-263.
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
Carrington, J.C.6
Weigel, D.7
-
66
-
-
66249110335
-
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins
-
Park, S.-Y., et al. (2009). Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science 324: 1068-1071.
-
(2009)
Science
, vol.324
, pp. 1068-1071
-
-
Park, S.-Y.1
-
67
-
-
33645530242
-
Global validation of linear model assumptions
-
Peña, E.A., and Slate, E.H. (2006). Global validation of linear model assumptions. J. Am. Stat. Assoc. 101: 341.
-
(2006)
J. Am. Stat. Assoc.
, vol.101
, pp. 341
-
-
Peña, E.A.1
Slate, E.H.2
-
69
-
-
46249094102
-
qpcR: An R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis
-
Ritz, C., and Spiess, A.-N. (2008). qpcR: An R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis. Bioinformatics 24: 1549-1551.
-
(2008)
Bioinformatics
, vol.24
, pp. 1549-1551
-
-
Ritz, C.1
Spiess, A.-N.2
-
70
-
-
79960233891
-
Salicylic acid beyond defence: Its role in plant growth and development
-
Rivas-San Vicente, M., and Plasencia, J. (2011). Salicylic acid beyond defence: Its role in plant growth and development. J. Exp. Bot. 62: 3321-3338.
-
(2011)
J. Exp. Bot.
, vol.62
, pp. 3321-3338
-
-
Rivas-San Vicente, M.1
Plasencia, J.2
-
71
-
-
66149192067
-
Shoot apical meristem function in Arabidopsis requires the combined activities of three BEL1-like homeodomain proteins
-
Rutjens, B., Bao, D., van Eck-Stouten, E., Brand, M., Smeekens, S., and Proveniers, M. (2009). Shoot apical meristem function in Arabidopsis requires the combined activities of three BEL1-like homeodomain proteins. Plant J. 58: 641-654.
-
(2009)
Plant J.
, vol.58
, pp. 641-654
-
-
Rutjens, B.1
Bao, D.2
van Eck-Stouten, E.3
Brand, M.4
Smeekens, S.5
Proveniers, M.6
-
72
-
-
84862520770
-
Fiji: An open-source platform for biologicalimage analysis
-
Schindelin, J., et al. (2012). Fiji: An open-source platform for biologicalimage analysis. Nat. Methods 9: 676-682.
-
(2012)
Nat. Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
-
73
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M., Schölkopf, B., Weigel, D., and Lohmann, J.U. (2005). A gene expression map of Arabidopsis thaliana development. Nat. Genet. 37: 501-506.
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Schölkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
74
-
-
33745393624
-
Highly specific gene silencing by artificial microRNAs in Arabidopsis
-
Schwab, R., Ossowski, S., Riester, M., Warthmann, N., and Weigel, D. (2006). Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 18: 1121-1133.
-
(2006)
Plant Cell
, vol.18
, pp. 1121-1133
-
-
Schwab, R.1
Ossowski, S.2
Riester, M.3
Warthmann, N.4
Weigel, D.5
-
75
-
-
74049160719
-
Directed gene silencing with artificial microRNAs
-
Schwab, R., Ossowski, S., Warthmann, N., and Weigel, D. (2010). Directed gene silencing with artificial microRNAs. Methods Mol. Biol. 592: 71-88.
-
(2010)
Methods Mol. Biol.
, vol.592
, pp. 71-88
-
-
Schwab, R.1
Ossowski, S.2
Warthmann, N.3
Weigel, D.4
-
76
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab, R., Palatnik, J.F., Riester, M., Schommer, C., Schmid, M., and Weigel, D. (2005). Specific effects of microRNAs on the plant transcriptome. Dev. Cell 8: 517-527.
-
(2005)
Dev. Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
77
-
-
42149177744
-
The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis
-
Schwarz, S., Grande, A.V., Bujdoso, N., Saedler, H., and Huijser, P. (2008). The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis. Plant Mol. Biol. 67: 183-195.
-
(2008)
Plant Mol. Biol.
, vol.67
, pp. 183-195
-
-
Schwarz, S.1
Grande, A.V.2
Bujdoso, N.3
Saedler, H.4
Huijser, P.5
-
78
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
DATABASE ISSUE
-
Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., Jensen, L.J., and von Mering, C. (2011). The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39 (Database issue): D561-D568.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
Jensen, L.J.11
von Mering, C.12
-
79
-
-
33646904813
-
The Arabidopsis zinc fingerhomeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development
-
Tan, Q.K.-G., and Irish, V.F. (2006). The Arabidopsis zinc fingerhomeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. Plant Physiol. 140: 1095-1108.
-
(2006)
Plant Physiol.
, vol.140
, pp. 1095-1108
-
-
Tan, Q.K.-G.1
Irish, V.F.2
-
80
-
-
0034332996
-
A genetic uncertainty problem
-
Tautz, D. (2000). A genetic uncertainty problem. Trends Genet. 16: 475-477.
-
(2000)
Trends Genet.
, vol.16
, pp. 475-477
-
-
Tautz, D.1
-
81
-
-
12144291195
-
MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm, O., Bläsing, O., Gibon, Y., Nagel, A., Meyer, S., Krüger, P., Selbig, J., Müller, L.A., Rhee, S.Y., and Stitt, M. (2004). MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37: 914-939.
-
(2004)
Plant J.
, vol.37
, pp. 914-939
-
-
Thimm, O.1
Bläsing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
Krüger, P.6
Selbig, J.7
Müller, L.A.8
Rhee, S.Y.9
Stitt, M.10
-
82
-
-
0004248667
-
Interactively testing remote servers using the python programming language
-
van Rossum, G., and de Boer, J. (1991). Interactively testing remote servers using the python programming language. CWI Quarterly 4: 283-303.
-
(1991)
CWI Quarterly
, vol.4
, pp. 283-303
-
-
van Rossum, G.1
de Boer, J.2
-
83
-
-
14344263352
-
Distributed robustness versus redundancy as causes of mutational robustness
-
Wagner, A. (2005). Distributed robustness versus redundancy as causes of mutational robustness. Bioessays 27: 176-188.
-
(2005)
Bioessays
, vol.27
, pp. 176-188
-
-
Wagner, A.1
-
84
-
-
79960954205
-
Auxin Response Factor2 (ARF2) and its regulated homeodomain gene HB33 mediate abscisic acid response in Arabidopsis
-
Wang, L., Hua, D., He, J., Duan, Y., Chen, Z., Hong, X., and Gong, Z. (2011). Auxin Response Factor2 (ARF2) and its regulated homeodomain gene HB33 mediate abscisic acid response in Arabidopsis. PLoS Genet. 7: e1002172.
-
(2011)
PLoS Genet.
, vol.7
-
-
Wang, L.1
Hua, D.2
He, J.3
Duan, Y.4
Chen, Z.5
Hong, X.6
Gong, Z.7
-
85
-
-
57749110490
-
Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling
-
Wawrzynska, A., Christiansen, K.M., Lan, Y., Rodibaugh, N.L., and Innes, R.W. (2008). Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling. Plant Physiol. 148: 1510-1522.
-
(2008)
Plant Physiol.
, vol.148
, pp. 1510-1522
-
-
Wawrzynska, A.1
Christiansen, K.M.2
Lan, Y.3
Rodibaugh, N.L.4
Innes, R.W.5
-
86
-
-
0342927487
-
Activation tagging in Arabidopsis
-
Weigel, D., et al. (2000). Activation tagging in Arabidopsis. Plant Physiol. 122: 1003-1013.
-
(2000)
Plant Physiol.
, vol.122
, pp. 1003-1013
-
-
Weigel, D.1
-
87
-
-
77956293842
-
Transformation of Agrobacterium using electroporation
-
pdb.prot4665
-
Weigel, D. and Glazebrook, J. (2006). Transformation of Agrobacterium using electroporation. CSH Protoc. 2006: pdb. prot4665.
-
(2006)
CSH Protoc.
, vol.2006
-
-
Weigel, D.1
Glazebrook, J.2
-
89
-
-
33751516753
-
Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction
-
Wu, M.-F., Tian, Q., and Reed, J.W. (2006). Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 133: 4211-4218.
-
(2006)
Development
, vol.133
, pp. 4211-4218
-
-
Wu, M.-F.1
Tian, Q.2
Reed, J.W.3
-
90
-
-
67650429635
-
AtMKK1 and AtMPK6 are involved in abscisic acid and sugar signaling in Arabidopsis seed germination
-
Xing, Y., Jia, W., and Zhang, J. (2009). AtMKK1 and AtMPK6 are involved in abscisic acid and sugar signaling in Arabidopsis seed germination. Plant Mol. Biol. 70: 725-736.
-
(2009)
Plant Mol. Biol.
, vol.70
, pp. 725-736
-
-
Xing, Y.1
Jia, W.2
Zhang, J.3
-
91
-
-
77956795141
-
Arabidopsis BLADE-ON-PETIOLE1 and 2 promote floral meristem fate and determinacy in a previously undefined pathway targeting APETALA1 and AGAMOUS-LIKE24
-
Xu, M., Hu, T., McKim, S.M., Murmu, J., Haughn, G.W., and Hepworth, S.R. (2010). Arabidopsis BLADE-ON-PETIOLE1 and 2 promote floral meristem fate and determinacy in a previously undefined pathway targeting APETALA1 and AGAMOUS-LIKE24. Plant J. 63: 974-989.
-
(2010)
Plant J.
, vol.63
, pp. 974-989
-
-
Xu, M.1
Hu, T.2
McKim, S.M.3
Murmu, J.4
Haughn, G.W.5
Hepworth, S.R.6
-
92
-
-
42549144000
-
Isolation of a strong Arabidopsis guard cell promoter and its potential as a research tool
-
Yang, Y., Costa, A., Leonhardt, N., Siegel, R.S., and Schroeder, J.I. (2008). Isolation of a strong Arabidopsis guard cell promoter and its potential as a research tool. Plant Methods 4: 6.
-
(2008)
Plant Methods
, vol.4
, pp. 6
-
-
Yang, Y.1
Costa, A.2
Leonhardt, N.3
Siegel, R.S.4
Schroeder, J.I.5
-
93
-
-
0025371984
-
The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors
-
Yanofsky, M.F., Ma, H., Bowman, J.L., Drews, G.N., Feldmann, K.A., and Meyerowitz, E.M. (1990). The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors. Nature 346: 35-39.
-
(1990)
Nature
, vol.346
, pp. 35-39
-
-
Yanofsky, M.F.1
Ma, H.2
Bowman, J.L.3
Drews, G.N.4
Feldmann, K.A.5
Meyerowitz, E.M.6
-
94
-
-
27244443126
-
MetaCyc and AraCyc. Metabolic pathway databases for plant research
-
Zhang, P., Foerster, H., Tissier, C.P., Mueller, L., Paley, S., Karp, P.D., and Rhee, S.Y. (2005). MetaCyc and AraCyc. Metabolic pathway databases for plant research. Plant Physiol. 138: 27-37.
-
(2005)
Plant Physiol.
, vol.138
, pp. 27-37
-
-
Zhang, P.1
Foerster, H.2
Tissier, C.P.3
Mueller, L.4
Paley, S.5
Karp, P.D.6
Rhee, S.Y.7
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