Evaluation of the effectiveness of semen storage and sperm purification methods for spermatozoa transcript profiling

Systems Biology in Reproductive Medicine

Volumn 59, Issue 5, 2013, Pages 287-295

  Mao, Shihong ^a   Goodrich, Robert J ^a   Hauser, Russ ^b,c   Schrader, Steven M ^d,e   Chen, Zhen ^e,f   Krawetz, Stephen A ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

^c HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^d NATIONAL INSTITUTE FOR OCCUPATIONAL SAFETY AND HEALTH   (United States)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

Mitochondrial RNA; Preferentially isolated transcripts; Stable transcript pairs

Indexed keywords

RNA;

ARTICLE; CYTOLYSIS; EVALUATION; HUMAN; HUMAN CELL; INTERMETHOD COMPARISON; MALE; MITOCHONDRION; PRIORITY JOURNAL; PURIFICATION; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; RNA SEQUENCE; SOMATIC CELL; SPERM PRESERVATION; SPERMATOZOON;

CELL SEPARATION; HUMANS; MALE; RNA; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 16S; SEMEN; SEMEN PRESERVATION; SEQUENCE ANALYSIS, RNA; SPERM COUNT; SPERMATOZOA; TRANSCRIPTION, GENETIC;

EID: 84884622028     PISSN: 19396368     EISSN: 19396376     Source Type: Journal    
DOI: 10.3109/19396368.2013.817626     Document Type: Article

References (27)

1. Aronesty, E. (2011) ea-utils : Command-line tools for processing biological sequencing data. http://code.google.com/p/ea-utils
2. Card, C., Anderson, E.J., Zamberlan, S., Krieger, K.B., Kaproth, M. and Sartini, B.L. (2013) Cryopreserved Bovine Spermatozoal Transcript Profile as Revealed by High-Throughput Ribonucleic Acid Sequencing. Biol Reprod 88:49.
3. Carreau, S., Lambard, S., Said, L., Saad, A. and Galeraud-Denis, I. (2007) RNA dynamics of fertile and infertile spermatozoa. Biochem Soc Trans 35:634-636.
4. Dadoune, J.P. (2009) Spermatozoal RNAs: what about their functions Microsc Res Tech 72:536-551.
5. Fischer,B.E.,Wasbrough, E.,Meadows, L.A.,Randlet,O., Dorus, S.,Karr, T.L., et al. (2012)Conserved properties ofDrosophila andhuman spermatozoal mRNA repertoires. Proc Biol Sci 279:2636-2644.
6. Fourie, J., Loskutoff, N. and Huyser, C. (2012) Treatment of human sperm with serine protease during density gradient centrifugation. J Assist Reprod Genet 29:1273-1279.
7. Galeraud-Denis, I., Lambard, S. and Carreau, S. (2007) Relationship between chromatin organization, mRNAs profile and human male gamete quality. Asian J Androl 9:587-592.
8. Goodrich, R., Johnson, G. and Krawetz, S.A. (2007) The preparation of human spermatozoal RNA for clinical analysis. Arch Androl 53:161-167.
9. Goodrich, R.J., Anton, E. and Krawetz, S.A. (2013) Isolating mRNA and small noncoding RNAs from human sperm. Methods Mol Biol 927:385-396.
10. Hamatani, T. (2012) Human spermatozoal RNAs. Fertil Steril 97:275-281.
11. Jodar, M., Kalko, S., Castillo, J., Ballesca, J.L. and Oliva, R. (2012) Differential RNAs in the sperm cells of asthenozoospermic patients. Hum Reprod 27:1431-1438.
12. Johnson, G.D., Sendler, E., Lalancette, C., Hauser, R., Diamond, M. P. and Krawetz, S.A. (2011) Cleavage of rRNA ensures translational cessation in sperm at fertilization. Mol Hum Reprod 17:721-726.
13. Krawetz, S.A. (2005) Paternal contribution: new insights and future challenges. Nat Rev Genet 6:633-642.
14. Lima-Souza, A., Anton, E., Mao, S., Ho,W.J. and Krawetz, S.A. (2012) A platform for evaluating sperm RNA biomarkers: dysplasia of the fibrous sheath-testing the concept. Fertil Steril 97:1061-1066 e1061-1063.
15. Mao, S., Souza, A.L., Goodrich, R.J. and Krawetz, S.A. (2012) Identification of artifactual microarray probe signals constantly present in multiple sample types. Biotechniques 53:91-98.
16. Nicolas, M., Alvarez, M., Borragan, S., Martinez-Pastor, F., Chamorro, C.A., Alvarez-Rodriguez, M., et al. (2012) Evaluation of the qualitative and quantitative effectiveness of three media of centrifugation (Maxifreeze, Cushion Fluid Equine, and PureSperm 100) in preparation of fresh or frozen-thawed brown bear spermatozoa. Theriogenology 77:1119-1128.
17. Ostermeier, G.C., Dix, D.J., Miller, D., Khatri, P. and Krawetz, S.A. (2002) Spermatozoal RNA profiles of normal fertile men. Lancet 360:772-777.
18. Ostermeier, G.C., Goodrich, R.J., Diamond, M.P., Dix, D.J. and Krawetz, S.A. (2005a) Toward using stable spermatozoal RNAs for prognostic assessment of male factor fertility. Fertil Steril 83:1687-1694.
19. Ostermeier, G.C., Goodrich, R.J., Moldenhauer, J.S., Diamond, M.P. and Krawetz, S.A. (2005b) A suite of novel human spermatozoal RNAs. J Androl 26:70-74.
20. Pessot, C.A., Brito, M., Figueroa, J., Concha, II, Yanez, A. and Burzio, L.O. (1989) Presence of RNA in the sperm nucleus. Biochem Biophys Res Commun 158:272-278.
21. Platts, A.E., Dix, D.J., Chemes, H.E., Thompson, K.E., Goodrich, R., Rockett, J.C., et al. (2007) Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs. Hum Mol Genet 16:763-773.
22. Platts, A.E., Lalancette, C., Emery, B.R., Carrell, D.T. and Krawetz, S. A. (2010) Disease progression and solid tumor survival: a transcriptome decoherence model. Mol Cell Probes 24:53-60.
23. Sendler, E., Johnson, G.D., Mao, S., Goodrich, R.J., Diamond, M.P., Hauser, R., et al. (2013) Stability, delivery and functions of human sperm RNAs at fertilization. Nucleic Acids Res 41:4104-4117.
24. Sousa, A.P., Amaral, A., Baptista, M., Tavares, R., Caballero Campo, P., Caballero Peregrin, P., et al. (2011) Not all sperm are equal: functional mitochondria characterize a subpopulation of human sperm with better fertilization potential. PLoS One 6:e18112.
25. Spadafora, C. (2008) A reverse transcriptase-dependent mechanism plays central roles in fundamental biological processes. Syst Biol Reprod Med 54:11-21.
26. WHO (2010) WHO Laboratory Manual for the Examination and Processing of Human Semen. 5th edition,World Health Organization, Switzerland.
27. Yang, C.C., Lin, Y.S., Hsu, C.C., Wu, S.C., Lin, E.C. and Cheng, W.T. (2009) Identification and sequencing of remnant messenger RNAs found in domestic swine (Sus scrofa) fresh ejaculated spermatozoa. Anim Reprod Sci 113:143-155