-
1
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 2011;12:R18.
-
(2011)
Genome Biol
, vol.12
-
-
Aird, D.1
Ross, M.G.2
Chen, W.S.3
Danielsson, M.4
Fennell, T.5
Russ, C.6
Jaffe, D.B.7
Nusbaum, C.8
Gnirke, A.9
-
2
-
-
58449112510
-
Pregnancy-specific {beta}-1-glycoprotein 1 and human leukocyte antigen-E mRNA in human sperm: differential expression in fertile and infertile men and evidence of a possible functional role during early development
-
Avendano C, Franchi A, Jones E, Oehninger S. Pregnancy-specific {beta}-1-glycoprotein 1 and human leukocyte antigen-E mRNA in human sperm: differential expression in fertile and infertile men and evidence of a possible functional role during early development. Hum Reprod 2009;24:270-277.
-
(2009)
Hum Reprod
, vol.24
, pp. 270-277
-
-
Avendano, C.1
Franchi, A.2
Jones, E.3
Oehninger, S.4
-
3
-
-
78049354472
-
A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
-
Bourc'his D, Voinnet O. A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science 2010;330:617-622.
-
(2010)
Science
, vol.330
, pp. 617-622
-
-
Bourc'his, D.1
Voinnet, O.2
-
4
-
-
0021869570
-
Morphogenesis and fate of the residual body in human spermiogenesis
-
Breucker H, Schafer E, Holstein AF. Morphogenesis and fate of the residual body in human spermiogenesis. Cell Tissue Res 1985;240:303-309.
-
(1985)
Cell Tissue Res
, vol.240
, pp. 303-309
-
-
Breucker, H.1
Schafer, E.2
Holstein, A.F.3
-
5
-
-
81255127587
-
Highly purified spermatozoal RNA obtained by a novel method indicates an unusual 28S/18S rRNA ratio and suggests impaired ribosome assembly
-
(2011). first published online May 18. doi:10.1093/molehr/gar037
-
Cappallo-Obermann H, Schulze W, Jastrow H, Baukloh V, Spiess A-N. Highly purified spermatozoal RNA obtained by a novel method indicates an unusual 28S/18S rRNA ratio and suggests impaired ribosome assembly. Mol Hum Reprod (2011) first published online May 18, 2011 doi:10.1093/molehr/gar037.
-
(2011)
Mol Hum Reprod
-
-
Cappallo-Obermann, H.1
Schulze, W.2
Jastrow, H.3
Baukloh, V.4
Spiess, A.-N.5
-
6
-
-
0028157572
-
Detection of human leukocyte antigen class I messenger ribonucleic acid transcripts in human spermatozoa via reverse transcription-polymerase chain reaction
-
Chiang MH, Steuerwald N, Lambert H, Main EK, Steinleitner A. Detection of human leukocyte antigen class I messenger ribonucleic acid transcripts in human spermatozoa via reverse transcription-polymerase chain reaction. Fertil Steril 1994;61:276-280.
-
(1994)
Fertil Steril
, vol.61
, pp. 276-280
-
-
Chiang, M.H.1
Steuerwald, N.2
Lambert, H.3
Main, E.K.4
Steinleitner, A.5
-
7
-
-
77956226072
-
Total RNA isolation from stallion sperm and testis biopsies
-
106e1-2
-
Das PJ, Paria N, Gustafson-Seabury A, Vishnoi M, Chaki SP, Love CC, Varner DD, Chowdhary BP, Raudsepp T. Total RNA isolation from stallion sperm and testis biopsies. Theriogenology 2010;74:1099-1106, 106e1-2.
-
(2010)
Theriogenology
, vol.74
, pp. 1099-1106
-
-
Das, P.J.1
Paria, N.2
Gustafson-Seabury, A.3
Vishnoi, M.4
Chaki, S.P.5
Love, C.C.6
Varner, D.D.7
Chowdhary, B.P.8
Raudsepp, T.9
-
8
-
-
34547561271
-
A molecular analysis of the population of mRNA in bovine spermatozoa
-
Gilbert I, Bissonnette N, Boissonneault G, Vallee M, Robert C. A molecular analysis of the population of mRNA in bovine spermatozoa. Reproduction 2007;133:1073-1086.
-
(2007)
Reproduction
, vol.133
, pp. 1073-1086
-
-
Gilbert, I.1
Bissonnette, N.2
Boissonneault, G.3
Vallee, M.4
Robert, C.5
-
9
-
-
79961179615
-
The preparation of human spermatozoal RNA for clinical analysis
-
Goodrich R, Johnson G, Krawetz SA. The preparation of human spermatozoal RNA for clinical analysis. Arch Androl 2007;53:161-167.
-
(2007)
Arch Androl
, vol.53
, pp. 161-167
-
-
Goodrich, R.1
Johnson, G.2
Krawetz, S.A.3
-
11
-
-
0027981974
-
Mapping RNA regions in eukaryotic ribosomes that are accessible to methidiumpropyl-EDTA. Fe(II) and EDTA. Fe(II)
-
Han H, Schepartz A, Pellegrini M, Dervan PB. Mapping RNA regions in eukaryotic ribosomes that are accessible to methidiumpropyl-EDTA.Fe(II) and EDTA.Fe(II). Biochemistry 1994;33:9831-9844.
-
(1994)
Biochemistry
, vol.33
, pp. 9831-9844
-
-
Han, H.1
Schepartz, A.2
Pellegrini, M.3
Dervan, P.B.4
-
12
-
-
77955883388
-
Biases in Illumina transcriptome sequencing caused by random hexamer priming
-
Hansen KD, Brenner SE, Dudoit S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 2010;38:e131.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Hansen, K.D.1
Brenner, S.E.2
Dudoit, S.3
-
13
-
-
0028308319
-
Probing the structure of mouse Ehrlich ascites cell 5.8S. 18S and 28S ribosomal RNA in situ
-
Holmberg L, Melander Y, Nygard O. Probing the structure of mouse Ehrlich ascites cell 5.8S, 18S and 28S ribosomal RNA in situ. Nucleic Acids Res 1994;22:1374-1382.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1374-1382
-
-
Holmberg, L.1
Melander, Y.2
Nygard, O.3
-
14
-
-
0028900071
-
Fine mapping of 28S rRNA sites specifically cleaved in cells undergoing apoptosis
-
Houge G, Robaye B, Eikhom TS, Golstein J, Mellgren G, Gjertsen BT, Lanotte M, Doskeland SO. Fine mapping of 28S rRNA sites specifically cleaved in cells undergoing apoptosis. Mol Cell Biol 1995; 15:2051-2062.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 2051-2062
-
-
Houge, G.1
Robaye, B.2
Eikhom, T.S.3
Golstein, J.4
Mellgren, G.5
Gjertsen, B.T.6
Lanotte, M.7
Doskeland, S.O.8
-
15
-
-
78650748904
-
The sperm nucleus: chromatin, RNA, and the nuclear matrix
-
Johnson GD, Lalancette C, Linnemann AK, Leduc F, Boissonneault G, Krawetz SA. The sperm nucleus: chromatin, RNA, and the nuclear matrix. Reproduction 2011;141:21-36.
-
(2011)
Reproduction
, vol.141
, pp. 21-36
-
-
Johnson, G.D.1
Lalancette, C.2
Linnemann, A.K.3
Leduc, F.4
Boissonneault, G.5
Krawetz, S.A.6
-
16
-
-
0016833934
-
Structural and transcriptional features of the mouse spermatid genome
-
Kierszenbaum AL, Tres LL. Structural and transcriptional features of the mouse spermatid genome. J Cell Biol 1975;65:258-270.
-
(1975)
J Cell Biol
, vol.65
, pp. 258-270
-
-
Kierszenbaum, A.L.1
Tres, L.L.2
-
17
-
-
79960058683
-
Amplification-free library preparation for paired-end Illumina Sequencing
-
Kozarewa I, Turner DJ. Amplification-free library preparation for paired-end Illumina Sequencing. Methods Mol Biol 2011;733: 257-266.
-
(2011)
Methods Mol Biol
, vol.733
, pp. 257-266
-
-
Kozarewa, I.1
Turner, D.J.2
-
18
-
-
63949083912
-
Amplification-free illumina sequencing-library preparation facilitates improved mapping and assembly of (G + C)-biased genomes
-
Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ. Amplification-free illumina sequencing-library preparation facilitates improved mapping and assembly of (G + C)-biased genomes. Nat Methods 2009;6:291-295.
-
(2009)
Nat Methods
, vol.6
, pp. 291-295
-
-
Kozarewa, I.1
Ning, Z.2
Quail, M.A.3
Sanders, M.J.4
Berriman, M.5
Turner, D.J.6
-
19
-
-
22944483755
-
Paternal contribution: new insights and future challenges
-
Krawetz SA. Paternal contribution: new insights and future challenges. Nat Rev Genet 2005;6:633-642.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 633-642
-
-
Krawetz, S.A.1
-
20
-
-
0022799674
-
A vector-primer-cloner-sequencer plasmid for the construction of cDNA libraries: evidence for a rat glyceraldehyde-3-phosphate dehydrogenase-like mRNA and a ferritin mRNA within testis
-
Krawetz SA, Connor W, Cannon PD, Dixon GH. A vector-primer-cloner-sequencer plasmid for the construction of cDNA libraries: evidence for a rat glyceraldehyde-3-phosphate dehydrogenase-like mRNA and a ferritin mRNA within testis. DNA 1986;5:427-435.
-
(1986)
DNA
, vol.5
, pp. 427-435
-
-
Krawetz, S.A.1
Connor, W.2
Cannon, P.D.3
Dixon, G.H.4
-
21
-
-
0027337538
-
c-MYC mRNA is present in human sperm cells
-
Kumar G, Patel D, Naz RK. c-MYC mRNA is present in human sperm cells. Cell Mol Biol Res 1993;39:111-117.
-
(1993)
Cell Mol Biol Res
, vol.39
, pp. 111-117
-
-
Kumar, G.1
Patel, D.2
Naz, R.K.3
-
22
-
-
67649441113
-
Identification of human sperm transcripts as candidate markers of male fertility
-
Lalancette C, Platts AE, Johnson GD, Emery BR, Carrell DT, Krawetz SA. Identification of human sperm transcripts as candidate markers of male fertility. J Mol Med 2009;87:735-748.
-
(2009)
J Mol Med
, vol.87
, pp. 735-748
-
-
Lalancette, C.1
Platts, A.E.2
Johnson, G.D.3
Emery, B.R.4
Carrell, D.T.5
Krawetz, S.A.6
-
23
-
-
0027267021
-
The sequence of 28S ribosomal RNA varies within and between human cell lines
-
Leffers H, Andersen AH. The sequence of 28S ribosomal RNA varies within and between human cell lines. Nucleic Acids Res 1993; 21:1449-1455.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 1449-1455
-
-
Leffers, H.1
Andersen, A.H.2
-
24
-
-
67649228966
-
Use of spermatozoal mRNA profiles to study gene-environment interactions in human germ cells
-
Linschooten JO, Van Schooten FJ, Baumgartner A, Cemeli E, Van Delft J, Anderson D, Godschalk RW. Use of spermatozoal mRNA profiles to study gene-environment interactions in human germ cells. Mutat Res 2009;667:70-76.
-
(2009)
Mutat Res
, vol.667
, pp. 70-76
-
-
Linschooten, J.O.1
Van Schooten, F.J.2
Baumgartner, A.3
Cemeli, E.4
Van Delft, J.5
Anderson, D.6
Godschalk, R.W.7
-
25
-
-
77449147610
-
FRT-seq: amplification-free, strand-specific transcriptome sequencing
-
Mamanova L, Andrews RM, James KD, Sheridan EM, Ellis PD, Langford CF, Ost TW, Collins JE, Turner DJ. FRT-seq: amplification-free, strand-specific transcriptome sequencing. Nat Methods 2010; 7:130-132.
-
(2010)
Nat Methods
, vol.7
, pp. 130-132
-
-
Mamanova, L.1
Andrews, R.M.2
James, K.D.3
Sheridan, E.M.4
Ellis, P.D.5
Langford, C.F.6
Ost, T.W.7
Collins, J.E.8
Turner, D.J.9
-
26
-
-
17044435434
-
The controversy, potential and roles of spermatozoal RNA
-
Miller D, Ostermeier GC, Krawetz SA. The controversy, potential and roles of spermatozoal RNA. Trends Mol Med 2005;11:156-163.
-
(2005)
Trends Mol Med
, vol.11
, pp. 156-163
-
-
Miller, D.1
Ostermeier, G.C.2
Krawetz, S.A.3
-
27
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat Methods 2008;5:621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
28
-
-
0037036969
-
Spermatozoal RNA profiles of normal fertile men
-
Ostermeier GC, Dix DJ, Miller D, Khatri P, Krawetz SA. Spermatozoal RNA profiles of normal fertile men. Lancet 2002;360:772-777.
-
(2002)
Lancet
, vol.360
, pp. 772-777
-
-
Ostermeier, G.C.1
Dix, D.J.2
Miller, D.3
Khatri, P.4
Krawetz, S.A.5
-
29
-
-
2442674223
-
Reproductive biology: delivering spermatozoan RNA to the oocyte
-
Ostermeier GC, Miller D, Huntriss JD, Diamond MP, Krawetz SA. Reproductive biology: delivering spermatozoan RNA to the oocyte. Nature 2004;429:154.
-
(2004)
Nature
, vol.429
, pp. 154
-
-
Ostermeier, G.C.1
Miller, D.2
Huntriss, J.D.3
Diamond, M.P.4
Krawetz, S.A.5
-
30
-
-
20444457126
-
Toward using stable spermatozoal RNAs for prognostic assessment of male factor fertility
-
Ostermeier GC, Goodrich RJ, Diamond MP, Dix DJ, Krawetz SA. Toward using stable spermatozoal RNAs for prognostic assessment of male factor fertility. Fertil Steril 2005;83:1687-1694.
-
(2005)
Fertil Steril
, vol.83
, pp. 1687-1694
-
-
Ostermeier, G.C.1
Goodrich, R.J.2
Diamond, M.P.3
Dix, D.J.4
Krawetz, S.A.5
-
31
-
-
77955599601
-
Direct voltammetric analysis of DNA modified with enzymatically incorporated 7-deazapurines
-
Pivonkova H, Horakova P, Fojtova M, Fojta M. Direct voltammetric analysis of DNA modified with enzymatically incorporated 7-deazapurines. Anal Chem 2010;82:6807-6813.
-
(2010)
Anal Chem
, vol.82
, pp. 6807-6813
-
-
Pivonkova, H.1
Horakova, P.2
Fojtova, M.3
Fojta, M.4
-
32
-
-
34447323875
-
Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs
-
Platts AE, Dix DJ, Chemes HE, Thompson KE, Goodrich R, Rockett JC, Rawe VY, Quintana S, Diamond MP, Strader LF et al. Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs. Hum Mol Genet 2007;16:763-773.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 763-773
-
-
Platts, A.E.1
Dix, D.J.2
Chemes, H.E.3
Thompson, K.E.4
Goodrich, R.5
Rockett, J.C.6
Rawe, V.Y.7
Quintana, S.8
Diamond, M.P.9
Strader, L.F.10
-
34
-
-
0024603045
-
28 S ribosomal RNA in vertebrates. Locations of large-scale features revealed by electron microscopy in relation to other features of the sequences
-
Wakeman JA, Maden BE. 28 S ribosomal RNA in vertebrates. Locations of large-scale features revealed by electron microscopy in relation to other features of the sequences. Biochem J 1989;258:49-56.
-
(1989)
Biochem J
, vol.258
, pp. 49-56
-
-
Wakeman, J.A.1
Maden, B.E.2
-
35
-
-
2542469907
-
A spermatogenesis-related gene expression profile in human spermatozoa and its potential clinical applications
-
Wang H, Zhou Z, Xu M, Li J, Xiao J, Xu ZY, Sha J. A spermatogenesis-related gene expression profile in human spermatozoa and its potential clinical applications. J Mol Med 2004;82:317-324.
-
(2004)
J Mol Med
, vol.82
, pp. 317-324
-
-
Wang, H.1
Zhou, Z.2
Xu, M.3
Li, J.4
Xiao, J.5
Xu, Z.Y.6
Sha, J.7
-
36
-
-
0015906273
-
Secondary structure maps of RNA: processing of HeLa ribosomal RNA
-
Wellauer PK, Dawid IB. Secondary structure maps of RNA: processing of HeLa ribosomal RNA. Proc Nat Acad Sci USA 1973;70:2827-2831.
-
(1973)
Proc Nat Acad Sci USA
, vol.70
, pp. 2827-2831
-
-
Wellauer, P.K.1
Dawid, I.B.2
-
38
-
-
64949096237
-
Identification and sequencing of remnant messenger RNAs found in domestic swine (Sus scrofa) fresh ejaculated spermatozoa
-
Yang CC, Lin YS, Hsu CC, Wu SC, Lin EC, Cheng WTK. Identification and sequencing of remnant messenger RNAs found in domestic swine (Sus scrofa) fresh ejaculated spermatozoa. Anim Reprod Sci 2009; 113:143-155.
-
(2009)
Anim Reprod Sci
, vol.113
, pp. 143-155
-
-
Yang, C.C.1
Lin, Y.S.2
Hsu, C.C.3
Wu, S.C.4
Lin, E.C.5
Cheng, W.T.K.6
-
39
-
-
0035205327
-
Reverse transcription slippage over the mRNA secondary structure of the LIP1 gene
-
8, 90, passim
-
Zhang YJ, Pan HY, Gao SJ. Reverse transcription slippage over the mRNA secondary structure of the LIP1 gene. Biotechniques 2001;31:1286, 8, 90, passim.
-
(2001)
Biotechniques
, vol.31
, pp. 1286
-
-
Zhang, Y.J.1
Pan, H.Y.2
Gao, S.J.3
|