메뉴 건너뛰기




Volumn , Issue , 2011, Pages 253-267

Bacterial Community Structure and Dynamics in a Seasonally Anoxic Fjord: Saanich Inlet, British Columbia

Author keywords

Bacterial communities, in Saanich Inlet; OMZ formation and expansion; SSU rRNA gene clone library key

Indexed keywords


EID: 84884585134     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9781118010549.ch25     Document Type: Chapter
Times cited : (13)

References (52)
  • 1
    • 0002163955 scopus 로고
    • Deep water renewal in Saanich Inlet, an intermittently anoxic basin
    • Anderson JJ, Devol AH. 1973. Deep water renewal in Saanich Inlet, an intermittently anoxic basin. Estuarine Coastal Mar. Sci. 1:1-10.
    • (1973) Estuarine Coastal Mar. Sci , vol.1 , pp. 1-10
    • Anderson, J.J.1    Devol, A.H.2
  • 2
    • 25144475996 scopus 로고    scopus 로고
    • Marine microorganisms and global nutrient cycles
    • Arrigo KR. 2005. Marine microorganisms and global nutrient cycles Nature 437:349-355.
    • (2005) Nature , vol.437 , pp. 349-355
    • Arrigo, K.R.1
  • 3
    • 0036151745 scopus 로고    scopus 로고
    • Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean
    • Bano N, Hollibaugh JT. 2002. Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl. Environ Microbiol. 68:505-518.
    • (2002) Appl. Environ Microbiol , vol.68 , pp. 505-518
    • Bano, N.1    Hollibaugh, J.T.2
  • 4
    • 51649139328 scopus 로고
    • Distribution of dissolved and particulate trace metals in anoxic seawater, Saanich Inlet BC Canada
    • Binqiu Z, Wong CS, et al. 1992. Distribution of dissolved and particulate trace metals in anoxic seawater, Saanich Inlet, BC Canada Chinese J. Oceanol. Limnol. 10:75-83.
    • (1992) Chinese J. Oceanol. Limnol , vol.10 , pp. 75-83
    • Binqiu, Z.1    Wong, C.S.2
  • 5
    • 65249157930 scopus 로고    scopus 로고
    • OCEANS. Limits to marine life
    • Brewer PG, Peltzer ET. 2009. OCEANS. Limits to marine life. Science 324:347-348.
    • (2009) Science , vol.324 , pp. 347-348
    • Brewer, P.G.1    Peltzer, E.T.2
  • 6
    • 0035197026 scopus 로고    scopus 로고
    • The oceanic fixed nitrogen and nitrous oxide budgets: Moving targets as we enter the anthropocene
    • Codispoti LA, Brandes JA, et al. 2001. The oceanic fixed nitrogen and nitrous oxide budgets: Moving targets as we enter the anthropocene Sci. Mar. 65:85-105.
    • (2001) Sci Mar , vol.65 , pp. 85-105
    • Codispoti, L.A.1    Brandes, J.A.2
  • 7
    • 35948938590 scopus 로고    scopus 로고
    • Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters
    • Crump BC, Peranteau C, et al. 2007. Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters. Appl. Environ. Microbiol. 73:6802-6810.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 6802-6810
    • Crump, B.C.1    Peranteau, C.2
  • 8
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimerachecked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, et al. 2006. Greengenes, a chimerachecked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72:5069-5072.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2
  • 9
    • 0000549062 scopus 로고
    • Bacterial oxygen uptake kinetics as related to biological processes in oxygen deficient zones of the oceans
    • Devol AH. 1978. Bacterial oxygen uptake kinetics as related to biological processes in oxygen deficient zones of the oceans. Deep-Sea Res. 25:137-146.
    • (1978) Deep-Sea Res , vol.25 , pp. 137-146
    • Devol, A.H.1
  • 10
    • 0020925240 scopus 로고
    • Methane oxidation rates in the anaerobic sediments of Saanich Inlet
    • Devol AH. 1983. Methane oxidation rates in the anaerobic sediments of Saanich Inlet. Limnol. Oceanogr. 28:738-742.
    • (1983) Limnol. Oceanogr , vol.28 , pp. 738-742
    • Devol, A.H.1
  • 11
    • 0019381479 scopus 로고
    • Are high rates of sulphate reduction associated with anaerobic oxidation of methane
    • Devol AH, Ahmed SI. 1981. Are high rates of sulphate reduction associated with anaerobic oxidation of methane Nature 291:407-408.
    • (1981) Nature , vol.291 , pp. 407-408
    • Devol, A.H.1    Ahmed, S.I.2
  • 12
    • 49649095625 scopus 로고    scopus 로고
    • Spreading dead zones and consequences for marine ecosystems
    • Diaz RJ, Rosenberg R. 2008. Spreading dead zones and consequences for marine ecosystems. Science 321:926-929.
    • (2008) Science , vol.321 , pp. 926-929
    • Diaz, R.J.1    Rosenberg, R.2
  • 13
    • 0013507117 scopus 로고
    • Saanich Inlet Study: Water Use Inventory and Water Quality Assessment
    • Water Quality Branch, B.C Ministry of Environment, Lands and Parks, Victoria
    • Drinnan RW, Emmett B, et al. 1995. Saanich Inlet Study: Water Use Inventory and Water Quality Assessment. Water Quality Branch, B.C Ministry of Environment, Lands and Parks, Victoria.
    • (1995)
    • Drinnan, R.W.1    Emmett, B.2
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 15
    • 0018505658 scopus 로고
    • Redox species in a reducing fjord: Equilibrium and kinetic considerations
    • Emerson S, Cranston RE, et al. 1979. Redox species in a reducing fjord: Equilibrium and kinetic considerations. Deep-Sea Res 26A:859-878.
    • (1979) Deep-Sea Res , vol.26 A , pp. 859-878
    • Emerson, S.1    Cranston, R.E.2
  • 16
    • 0019896841 scopus 로고
    • Environmental oxidation rate of manganese(II): Bacterial catalysis
    • Emerson S, Kalhorn S, et al. 1982. Environmental oxidation rate of manganese(II): Bacterial catalysis. Geochim. Cosmochim. Acta 46:1073-1079.
    • (1982) Geochim. Cosmochim. Acta , vol.46 , pp. 1073-1079
    • Emerson, S.1    Kalhorn, S.2
  • 17
    • 0043128567 scopus 로고    scopus 로고
    • Physical processes associated with high primary production in Saanich Inlet
    • Gargett AE, Stucchi D, et al. 2003. Physical processes associated with high primary production in Saanich Inlet, British Columbia Estuarine Coastal Shelf Sci. 56:1141-1156.
    • (2003) British Columbia Estuarine Coastal Shelf Sci , vol.56 , pp. 1141-1156
    • Gargett, A.E.1    Stucchi, D.2
  • 18
    • 0030814810 scopus 로고    scopus 로고
    • Global patterns of marine nitrogen fixation and denitrification
    • Gruber N, Sarmiento JL. 1997. Global patterns of marine nitrogen fixation and denitrification. Global Biogeochem. Cycles 11:235-266.
    • (1997) Global Biogeochem Cycles , vol.11 , pp. 235-266
    • Gruber, N.1    Sarmiento, J.L.2
  • 19
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online-A web server for fast maximum likelihood-based phylogenetic inference
    • Web Server issue
    • Guindon S, Lethiec F, et al. 2005. PHYML Online-A web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33(Web Server issue): W557-W559.
    • (2005) Nucleic Acids Res , vol.33 , pp. 557-559
    • Guindon, S.1    Lethiec, F.2
  • 20
    • 33644949567 scopus 로고    scopus 로고
    • The impacts of climate change in coastal marine systems
    • Harley CD, Hughes AR, et al. 2006. The impacts of climate change in coastal marine systems. Ecol. Lett. 9:228-241.
    • (2006) Ecol. Lett. , vol.9 , pp. 228-241
    • Harley, C.D.1    Hughes, A.R.2
  • 21
    • 0002217482 scopus 로고
    • Oceanography of Saanich Inlet in Vancouver Island British Columbia
    • Herlinveaux RH. 1962. Oceanography of Saanich Inlet in Vancouver Island, British Columbia. J. Fisheries Res. Board Canada 19:1-37.
    • (1962) J. Fisheries Res. Board Canada , vol.19 , pp. 1-37
    • Herlinveaux, R.H.1
  • 22
    • 0002365417 scopus 로고
    • Water-column dark CO2fixation and bacterial-mat growth in intermittently Anoxic Saanich Inlet British-Columbia
    • Juniper SK, Brinkhurst RO. 1986. Water-column dark CO2 fixation and bacterial-mat growth in intermittently Anoxic Saanich Inlet, British-Columbia. Mar. Ecol. Prog. Ser. 33:41-50.
    • (1986) Mar. Ecol. Prog. Ser , vol.33 , pp. 41-50
    • Juniper, S.K.1    Brinkhurst, R.O.2
  • 23
    • 70149096639 scopus 로고    scopus 로고
    • The impact of remineralization depth on the air-sea carbon balance
    • Kwon EY, Primeau F, et al. 2009. The impact of remineralization depth on the air-sea carbon balance. Nat. Geosci. 2:630-635.
    • (2009) Nat. Geosci. , vol.2 , pp. 630-635
    • Kwon, E.Y.1    Primeau, F.2
  • 24
    • 63849329587 scopus 로고    scopus 로고
    • Revising the nitrogen cycle in the Peruvian oxygen minimum zone
    • Lam P, Lavik G, et al. 2009. Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc. Natl. Acad. Sci. USA 106:4752-4757.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 4752-4757
    • Lam, P.1    Lavik, G.2
  • 25
    • 59049088352 scopus 로고    scopus 로고
    • Detoxification of sulphidic African shelf waters by blooming chemolithotrophs
    • Lavik G, Stuhrmann T, et al. 2009. Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature 457:581-584.
    • (2009) Nature , vol.457 , pp. 581-584
    • Lavik, G.1    Stuhrmann, T.2
  • 27
    • 3543142618 scopus 로고    scopus 로고
    • Oxygen minimum zone benthos: adaptations and community response to hypoxia
    • Levin LA. 2003. Oxygen minimum zone benthos: adaptations and community response to hypoxia. Oceanogra. Mar. Biol. 41:1-45.
    • (2003) Oceanogra. Mar. Biol. , vol.41 , pp. 1-45
    • Levin, L.A.1
  • 28
    • 0020375358 scopus 로고
    • Dissolved hydrogen and methane in Saanich Inlet British Columbia
    • Lilley MD, Baross JA, et al. 1982. Dissolved hydrogen and methane in Saanich Inlet, British Columbia. Deep Sea Res. 29:1471-1484.
    • (1982) Deep Sea Res , vol.29 , pp. 1471-1484
    • Lilley, M.D.1    Baross, J.A.2
  • 29
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig W, Strunk O, et al. 2004. ARB: A software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1    Strunk, O.2
  • 33
    • 67349131571 scopus 로고    scopus 로고
    • Oxygen minimum zones (OMZs) in the modern ocean
    • Paulmier A, Ruiz-Pino D. 2008. Oxygen minimum zones (OMZs) in the modern ocean. Prog. Oceanogr. 80:113-128.
    • (2008) Prog. Oceanogr. , vol.80 , pp. 113-128
    • Paulmier, A.1    Ruiz-Pino, D.2
  • 34
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, et al. 2007. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2
  • 35
    • 77149147414 scopus 로고    scopus 로고
    • Dynamics and distribution of natural and human-caused hypoxia
    • Rabalais N, Diaz RJ, et al. 2010. Dynamics and distribution of natural and human-caused hypoxia. Biogeosciences 7:585-619.
    • (2010) Biogeosciences , vol.7 , pp. 585-619
    • Rabalais, N.1    Diaz, R.J.2
  • 37
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, PD, Handelsman J. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71(3):1501-1506.
    • (2005) Appl. Environ. Microbiol , vol.71 , Issue.3 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 38
    • 33750078701 scopus 로고    scopus 로고
    • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures
    • Schloss PD, Handelsman J. 2006. Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl. Environ. Microbiol 72:6773-6779.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6773-6779
    • Schloss, P.D.1    Handelsman, J.2
  • 39
    • 71249090867 scopus 로고    scopus 로고
    • Phylogenetic diversity of transition and anoxic zone bacterial communities within a nearshore anoxic basin: Nitinat Lake
    • Schmidtova, J, Hallam SJ, et al. 2009. Phylogenetic diversity of transition and anoxic zone bacterial communities within a nearshore anoxic basin: Nitinat Lake. Environ. Microbiol. 11:3233-3251.
    • (2009) Environ. Microbiol. , vol.11 , pp. 3233-3251
    • Schmidtova, J.1    Hallam, S.J.2
  • 40
    • 41849142283 scopus 로고    scopus 로고
    • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
    • Stevens H, Ulloa O. 2008. Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ. Microbiol 10:1244-1259.
    • (2008) Environ. Microbiol , vol.10 , pp. 1244-1259
    • Stevens, H.1    Ulloa, O.2
  • 41
    • 46449104196 scopus 로고    scopus 로고
    • Expanding oxygen-minimum zones in the tropical oceans
    • Stramma L, Johnson GC, et al. 2008. Expanding oxygen-minimum zones in the tropical oceans. Science 320:655-658.
    • (2008) Science , vol.320 , pp. 655-658
    • Stramma, L.1    Johnson, G.C.2
  • 42
    • 2342523936 scopus 로고    scopus 로고
    • Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume
    • Sunamura M, Higashi Y, et al. 2004. Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume. Appl. Environ Microbiol. 70:1190-1198.
    • (2004) Appl. Environ Microbiol , vol.70 , pp. 1190-1198
    • Sunamura, M.1    Higashi, Y.2
  • 43
    • 0022375594 scopus 로고
    • Effect of oxygen-tension, Mn(Ii) concentration, and temperature on the microbially catalyzed Mn(Ii) oxidation rate in a marine fiord
    • Tebo BM, Emerson S. 1985. Effect of oxygen-tension, Mn(Ii) concentration, and temperature on the microbially catalyzed Mn(Ii) oxidation rate in a marine fiord. Appl. Environ. Microbiol. 50:1268-1273.
    • (1985) Appl. Environ. Microbiol. , vol.50 , pp. 1268-1273
    • Tebo, B.M.1    Emerson, S.2
  • 44
    • 0035186970 scopus 로고    scopus 로고
    • Primary production and deepwater oxygen content of two British Columbian fjords
    • Timothy DA, Soon MYS. 2001. Primary production and deepwater oxygen content of two British Columbian fjords. Mar. Chem 73:37-51.
    • (2001) Mar. Chem , vol.73 , pp. 37-51
    • Timothy, D.A.1    Soon, M.Y.S.2
  • 45
    • 70350502063 scopus 로고    scopus 로고
    • Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
    • Walsh DA, Zaikova E, et al. 2009. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578-582.
    • (2009) Science , vol.326 , pp. 578-582
    • Walsh, D.A.1    Zaikova, E.2
  • 46
    • 1842327729 scopus 로고
    • Relationship between substrate concentration and oxidation of ammonium and methane in a stratified water column
    • Ward BB, Kilpatrick AE. 1990. Relationship between substrate concentration and oxidation of ammonium and methane in a stratified water column. Cont. Shelf Res. 10:1193-1208.
    • (1990) Cont. Shelf Res , vol.10 , pp. 1193-1208
    • Ward, B.B.1    Kilpatrick, A.E.2
  • 47
    • 0002540594 scopus 로고
    • Methane oxidation in Saanich Inlet
    • Ward BB, Kilpatrick AE, et al. 1989. Methane oxidation in Saanich Inlet. Cont. Shelf Res. 9:65-75.
    • (1989) Cont. Shelf Res , vol.9 , pp. 65-75
    • Ward, B.B.1    Kilpatrick, A.E.2
  • 48
    • 69949108471 scopus 로고    scopus 로고
    • Denitrification as the dominant nitrogen loss process in the Arabian Sea
    • Ward BB, Devol AH, et al. 2009. Denitrification as the dominant nitrogen loss process in the Arabian Sea. Nature 461:78-81.
    • (2009) Nature , vol.461 , pp. 78-81
    • Ward, B.B.1    Devol, A.H.2
  • 49
    • 35348861013 scopus 로고    scopus 로고
    • Decreasing oxygen levels in the interior waters of the subarctic Pacific
    • Whitney FA, Freeland HJ, et al. 2007. Decreasing oxygen levels in the interior waters of the subarctic Pacific. Prog. Oceanogr 75:179-199.
    • (2007) Prog. Oceanogr , vol.75 , pp. 179-199
    • Whitney, F.A.1    Freeland, H.J.2
  • 50
    • 34547201959 scopus 로고    scopus 로고
    • Potential interactions of particleassociated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system
    • Woebken D, Fuchs BM, et al. 2007. Potential interactions of particleassociated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl. Environ. Microbiol 73:4648-657.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 4648-4657
    • Woebken, D.1    Fuchs, B.M.2
  • 51
    • 73349133709 scopus 로고    scopus 로고
    • Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet
    • Zaikova E, Walsh DA, et al. 2010. Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia. Environ Microbiol. 12:172-191.
    • (2010) British Columbia Environ Microbiol , vol.12 , pp. 172-191
    • Zaikova, E.1    Walsh, D.A.2
  • 52
    • 0002695807 scopus 로고
    • Geochemistry and biogeochemistry of anaerobic habitats
    • Zehnder AJ, ed New York: John Wiley & Sons
    • Zehnder AJ, Stumm W. 1988. Geochemistry and biogeochemistry of anaerobic habitats. In Zehnder AJ, ed. Biology of Anaerobic Microorganisms. New York: John Wiley & Sons.
    • (1988) Biology of Anaerobic Microorganisms
    • Zehnder, A.J.1    Stumm, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.