Wide Host Ranges of Herbivorous Beetles? Insights from DNA Bar Coding

PLoS ONE

Volumn 8, Issue 9, 2013, Pages

  Kishimoto Yamada, Keiko ^a   Kamiya, Koichi ^b   Meleng, Paulus ^c   Diway, Bibian ^d   Kaliang, Het ^d   Chong, Lucy ^d   Itioka, Takao ^e   Sakai, Shoko ^f   Ito, Motomi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b EHIME UNIVERSITY   (Japan)

^c Sarawak Forest Department   (Malaysia)

^d Applied Forest Science and Industry Development   (Malaysia)

^e KYOTO UNIVERSITY   (Japan)

^f RESEARCH INSTITUTE FOR HUMANITY AND NATURE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST DNA;

ADULT ANIMAL; ANGIOSPERM; ARTICLE; CHLOROPLAST; CHRYSOMELIDAE; CONTROLLED STUDY; DNA BARCODING; DNA DETERMINATION; GASTROPHYSA ATROCYANEA; GYMNOSPERM; HOST RANGE; NONHUMAN; PLANT INSECT INTERACTION; PLANT TAXONOMY; REFERENCE DATABASE; SEQUENCE ANALYSIS; SPECIES COMPARISON; SPECIES IDENTIFICATION; TROPICAL RAIN FOREST;

ANIMALS; BEETLES; DNA; DNA BARCODING, TAXONOMIC; HERBIVORY; PLANTS;

EID: 84884497470     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0074426     Document Type: Article

References (71)

1. Novotny V, Basset Y, (2005) Host specificity of insect herbivores in tropical forests. Proc Biol Sci 272: 1083-1090. doi:10.1098/rspb.2004.3023. PubMed: 16024368.
2. Lewinsohn TM, Roslin T, (2008) Four ways towards tropical herbivore megadiversity. Ecol Lett 11: 398-416. doi:10.1111/j.1461-0248.2008.01155.x. PubMed: 18248447.
3. Erwin TL, (1982) Tropical forests: their richness in Coleoptera and other arthropod species. Coleopts. Bulletin 36: 74-75.
4. Basset Y, (1992) Host specificity of arboreal and free-living insect herbivores in rain-forests. Biol J Linn Soc 47: 115-133. doi:10.1111/j.1095-8312.1992.tb00659.x.
5. Basset Y, Samuelson GA, Allison A, Miller SE, (1996) How many species of host-specific insects feed on a species of tropical tree? Biol J Linn Soc 59: 201-216. doi:10.1111/j.1095-8312.1996.tb01461.x.
6. Barone JA, (1998) Host-specificity of folivorous insects in a moist tropical forest. J Anim Ecol 67: 400-409. doi:10.1046/j.1365-2656.1998.00197.x.
7. Ødegaard F, (2000) The relative importance of trees versus lianas as hosts for phytophagous beetles (Coleoptera) in tropical forests. J Biogeogr 27: 283-296. doi:10.1046/j.1365-2699.2000.00404.x.
8. Novotny V, Basset Y, Miller SE, Drozd P, Cizek L, (2002) Host specialization of leaf-chewing insects in a New Guinea rainforest. J Anim Ecol 71: 400-412. doi:10.1046/j.1365-2656.2002.00608.x.
9. Novotny V, Miller SE, Baje L, Balagawi S, Basset Y, et al. (2010) Guild-specific patterns of species richness and host specialization in plant-herbivore food webs from a tropical forest. J Anim Ecol 79: 1193-1203. doi:10.1111/j.1365-2656.2010.01728.x. PubMed: 20673235.
10. Novotny V, Miller SE, Hrcek J, Baje L, Basset Y, et al. (2012) Insects on plants: Explaining the paradox of low diversity within specialist herbivore guilds. Am Nat 179: 351-362. doi:10.1086/664082. PubMed: 22322223.
11. Rodríguez-Castañeda G, Dyer LA, Brehm G, Connahs H, Forkner RE, et al. (2010) Tropical forests are not flat: how mountains affect herbivore diversity. Ecol Lett 13: 1348-1357. doi:10.1111/j.1461-0248.2010.01525.x. PubMed: 20807233.
12. Whitmore TC, (1984) Tropical rain forests of the Far East. Oxford: Clarendon Press. 352pp.
13. Ashton PS, (1988) Dipterocarp biology as a window to the understanding of tropical forest structure. Annu Rev Ecol Syst 19: 347-370. doi:10.1146/annurev.es.19.110188.002023.
14. Appanah S, (1993) Mass flowering of dipterocarp forests in the aseasonal tropics. J Biosci 18: 457-474. doi:10.1007/BF02703079.
15. Novotny V, Basset Y, Miller SE, Weiblen GD, Bremer B, et al. (2002) Low host specificity of herbivorous insects in a tropical forest. Nature 416: 841-844. doi:10.1038/416841a. PubMed: 11976681.
16. Weiblen GD, Webb CO, Novotny V, Basset Y, Miller SE, (2006) Phylogenetic dispersion of host use in a tropical insect herbivore community. Ecology 87: S62-S75. doi:10.1890/0012-9658(2006)87[62:PDOHUI]2.0.CO;2. PubMed: 16922303.
17. Coley PD, (1980) Effects of leaf age and plant life-history patterns on herbivory. Nature 284: 545-546. doi:10.1038/284545a0.
18. Aide TM, (1993) Patterns of leaf development and herbivory in a tropical understory community. Ecology 74: 455-466. doi:10.2307/1939307.
19. Coley PD, Barone JA, (1996) Herbivory and plant defenses in tropical forests. Annu Rev Ecol Syst 27: 305-335. doi:10.1146/annurev.ecolsys.27.1.305.
20. Wardhaugh CW, Stork NE, Edwards W, (2012) Feeding guild structure of beetles on Australian tropical rainforest trees reflects microhabitat resource availability. J Anim Ecol 81: 1086-1094. doi:10.1111/j.1365-2656.2012.01988.x. PubMed: 22530991.
21. Sakai S, (2002) General flowering in lowland mixed dipterocarp forests of South-east Asia. Biol J Linn Soc 75: 233-247. doi:10.1111/j.1095-8312.2002.tb01424.x.
22. Ichie T, Hiromi T, Yoneda R, Kamiya K, Kohira M, et al. (2004) Short-term drought causes synchronous leaf shedding and flushing in a lowland mixed dipterocarp forest, Sarawak, Malaysia. J Trop Ecol 20: 697-700. doi:10.1017/S0266467404001713.
23. Kishimoto-Yamada K, Itioka T, Sakai S, Ichie T, (2010) Seasonality in light-attracted chrysomelid populations in a Bornean rainforest. Insects Conserv Diver 3: 266-277. doi:10.1111/j.1752-4598.2010.00099.x.
24. Kishimoto-Yamada K, Itioka T, Sakai S, Momose K, Nagamitsu T, et al. (2009) Population fluctuations of light-attracted chrysomelid beetles in relation to supra-annual environmental changes in a Bornean rainforest. Bull Entomol Res 99: 217-227. doi:10.1017/S000748530800624X. PubMed: 18976509.
25. Kishimoto-Yamada K, Itioka T, (2008) Survival of flower-visiting chrysomelids during non general-flowering periods in Bornean dipterocarp forests. Biotropica 40: 600-606. doi:10.1111/j.1744-7429.2008.00410.x.
26. Mawdsley NA, Stork NE, (1997) Host specificity and the effective specialization of tropical canopy beetles. In: Stork NE, Adis J, Didham RK, eds. Canopy arthropods. London: The Natural History Museum. pp. pp. 104-130.
27. Novotny V, Drozd P, Miller SE, Kulfan M, Janda M, et al. (2006) Why are there so many species of herbivorous insects in tropical rainforests? Science 313: 1115-1118. doi:10.1126/science.1129237. PubMed: 16840659.
28. Ødegaard F, Diserud OH, Østbye K, (2005) The importance of plant relatedness for host utilization among phytophagous insects. Ecol Lett 8: 612-617. doi:10.1111/j.1461-0248.2005.00758.x.
29. Leps J, Novotny V, Basset Y, (2001) Habitat and successional status of plants in relation to the communities of their leaf-chewing herbivores in Papua New Guinea. J Ecol 89: 186-199. doi:10.1046/j.1365-2745.2001.00540.x.
30. Jurado-Rivera JA, Vogler AP, Reid CA, Petitpierre E, Gómez-Zurita J, (2009) DNA barcoding insect-host plant associations. Proc Biol Sci 276: 639-648. doi:10.1098/rspb.2008.1264. PubMed: 19004756.
31. Navarro SP, Jurado-Rivera JA, Gomez-Zurita J, Lyal CHC, Vogler AP, (2010) DNA profiling of host-herbivore interactions in tropical forests. Ecol Entomol 35: 18-32. doi:10.1111/j.1365-2311.2009.01145.x.
32. Staudacher K, Wallinger C, Schallhart N, Traugott M, (2011) Detecting ingested plant DNA in soil-living insect larvae. Soil Biol Biochem 43: 346-350. doi:10.1016/j.soilbio.2010.10.022. PubMed: 21317975.
33. García-Robledo C, Erickson DL, Staines CL, Erwin TL, Kress WJ, (2013) Tropical plant-herbivore networks: Reconstructing species interactions using DNA barcodes. PLOS ONE 8: e52967. doi:10.1371/journal.pone.0052967. PubMed: 23308128.
34. Kato M, Inoue T, Hamid AA, Nagamitsu T, Merdek MB, et al. (1995) Seasonality and vertical structure of light-attracted insect communities in a dipterocarp forest in Sarawak. Res Popul Ecol 37: 59-79. doi:10.1007/BF02515762.
35. Charles E, Basset Y, (2005) Vertical stratification of leaf-beetle assmblages (Coleoptera: Chrysomelidae) in two forest types in Panama. J Trop Ecol 21: 329-336. doi:10.1017/S0266467405002300.
36. Stork NE, Grimbacher PS, (2006) Beetle assemblages from an Australian tropical rainforest show that the canopy and the ground strata contribute equally to biodiversity. Proc Biol Sci 273: 1969-1975. doi:10.1098/rspb.2006.3521. PubMed: 16822759.
37. Jolivet P, Hawkeswood TJ, (1995) Host-plants of Chrysomelidae of the world. Leiden: Backhuys Publishers. 281pp.
38. Yumoto T, Nakashizuka T, (2005) Sarawak: The Canopy Biology Program in: scope, methods, and merit. In: Roubik DW, Sakai S, Hamid Karim AA, eds. Pollination ecology and the rain forest Sarawak studies. New York: Springer Verlag pp. pp. 13-21.
39. Nakagawa M, Tanaka K, Nakashizuka T, Ohkubo T, Kato T, et al. (2000) Impact of severe drought associated with the 1997-1998 El Niño in a tropical forest in Sarawak. J Trop Ecol 16: 355-367. doi:10.1017/S0266467400001450.
40. Kumagai T, Yoshifuji N, Tanaka N, Suzuki M, Kume T, (2009) Comparison of soil moisture dynamics between a tropical rain forest and a tropical seasonal forest in Southeast Asia: Impact of seasonal and year-to-year variations in rainfall. Water Resour Res 45: W04413.
41. Sakai S, Momose K, Yumoto T, Nagamitsu T, Nagamasu H, et al. (1999) Plant reproductive phenology over four years including an episode of general flowering in a lowland dipterocarp forest,Sarawak, Malaysia. Am J Bot 86: 1414-1436. doi:10.2307/2656924. PubMed: 10523283.
42. Sakai S, Harrison RD, Momose K, Kuraji K, Nagamasu H, et al. (2006) Irregular droughts trigger mass flowering in aseasonal tropical forests in Asia. Am J Bot 93: 1134-1139. doi:10.3732/ajb.93.8.1134. PubMed: 21642179.
43. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R, (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3: 294-299. PubMed: 7881515.
44. Kress WJ, Erickson DL, Jones FA, Swenson NG, Perez R, et al. (2009) Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proc Natl Acad Sci U S A 106: 18621-18626. doi:10.1073/pnas.0909820106. PubMed: 19841276.
45. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T, (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci U S A 86: 2766-2770. doi:10.1073/pnas.86.8.2766. PubMed: 2565038.
46. Watano Y, Imazu M, Shimizu T, (1995) Chloroplast DNA typing by PCR-SSCP in the Pinus pumila-P. parviflora var pentaphylla complex (Pinaceae). J Plant Res 108: 493-499. doi:10.1007/BF02344239.
47. Watano Y, Kanai A, Tani N, (2004) Genetic structure of hybrid zones between Pinus pumila and P. parviflora var. pentaphylla (Pinaceae) revealed by molecular hybrid index analysis. Am J Bot 91: 65-72. doi:10.3732/ajb.91.1.65. PubMed: 21653364.
48. Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120. doi:10.1007/BF01731581. PubMed: 7463489.
49. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi:10.1093/molbev/msr121. PubMed: 21546353.
50. Kress WJ, Erickson DL, (2007) A two-locus global DNA bar code for land plants: The coding rbcL gene complements the non-coding trnH-psbA spacer region. PLOS ONE 6: e508.
51. Lee HS, Ashton PS, Yamakura T, Tan S, Davies SJ, et al. (2002) The 52-hectare forest research plot at Lambir Hills, Sarawak, Malaysia: tree distribution maps, diameter tables and species documentation. Malaysia: Sarawak Forest Department & the Arnold Arboretum-CTFS Program & the Smithsonian Tropical Research Institute. 621pp.
52. Nagamasu H, Momose K, (1997) Flora of Lambir Hills National Park, Sarawak, with special reference to the Canopy Biology Plot. In: Inoue T, Hamid AA, eds. General flowering of tropical rainforests in Sarawak, Japan. Center for Ecological Research, Kyoto University. pp. 20-67.
53. Monaghan MT, Balke M, Gregory TR, Vogler AP, (2005) DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Philos Trans R Soc Lond B Biol Sci 360: 1925-1933. doi:10.1098/rstb.2005.1724. PubMed: 16214750.
54. Cognato AI, (2006) Standard percent DNA sequence difference for insects does not predict species boundaries. J Econ Entomol 99: 1037-1045. doi:10.1603/0022-0493-99.4.1037. PubMed: 16937653.
55. Raupach MJ, Astrin JJ, Hannig K, Peters MK, Stoeckle MY, et al. (2010) Molecular species identification of central European ground beetles (Coleoptera: Carabidae) using nuclear rDNA expansion segments and DNA barcodes. Front Zool 7: 26.
56. Bergsten J, Bilton DT, Fujisawa T, Elliott M, Monaghan MT, et al. (2012) The effect of geographical scale of sampling on DNA barcoding. Syst Biol 61: 851-869. doi:10.1093/sysbio/sys037. PubMed: 22398121.
57. Kubisz D, Kajtoch L, Mazur MA, Rizun V, (2012) Molecular bar coding for central-eastern European Crioceris leaf-beetles (Coleoptera: Chrysomelidae). Cent Eur J Biol 7: 69-76. doi:10.2478/s11535-011-0099-4.
58. Leigh EG Jr, Davidar P, Dick CW, Terborgh J, Puyravaud J-P, et al. (2004) Why do some tropical forests have so many species of trees? Biotropica 36: 447-473. doi:10.1111/j.1744-7429.2004.tb00342.x.
59. Webb CO, Peart DR, (1999) Seeding density dependence promotes coexistence of Bornean rain forest trees. Ecology 80: 2006-2017. doi:10.1890/0012-9658(1999)080[2006:SDDPCO]2.0.CO;2.
60. Webb CO, Gilbert GS, Donoghue MJ, (2006) Phylodiversity-dependent seedling mortality, size structure, and disease in a Bornean rain forest. Ecology 87: S123-S131. doi:10.1890/0012-9658(2006)87[123:PSMSSA]2.0.CO;2. PubMed: 16922308.
61. Piggott AG, (1988) Ferns of Malaysia in colour. Kuala Lumpur: Tropical Press Sdn. Bhd. 458 p.
62. Coode MJE, Dransfield J, Forman LL, Kirkup DW, Said MI, (1996) A checklist of the flowering plants and gymnosperms of Brunei Darussalam. Brunei Darussalam Minist Ind Prim Resources Brunei Darussalam: 477pp.
63. Webber BL, Woodrow IE, (2006) Morphological analysis and a resolution of the Ryparosa javanica species complex (Achariaceae) from Malesian and Australian tropical rainforests. Aust Syst Bot 19: 541-569. doi:10.1071/SB06001.
64. Chai PKP, (1984) Some ornamental and roadside plants of Sarawak, Malaysia. Sarawak: Forest Department. 174pp.
65. Website Official, of Forest Department, Sarawak. Available: http://www.forestry.sarawak.gov.my/page.php?id=647&menu_id=0&sub_id=244. Accessed 10 June 2013.
66. Novotny V, Basset Y, Kitching RL, (2003) Herbivore assemblages and their food resources. In: Basset Y, Novotny V, Miller SE, Kitching RL, eds. Arthropods of tropical forests-Spatio-temporal dynamics and resource use in the canopy. Cambridge: Cambridge University Press. pp. pp. 40-53.
67. Gentry AH, (1982) Neotropical floristic diversity: phytogeographical connections between central and south America, Pleistocene climatic fluctuations, or an accident of the Andean orogeny? Ann Mo Bot Gard 69: 557-593. doi:10.2307/2399084.
68. CBOL Plant Working GroupCBOL Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci U S A 106: 12794-12797. doi:10.1073/pnas.0905845106. PubMed: 19666622.
69. Gonzalez MA, Baraloto C, Engel J, Mori SA, Pétronelli P, et al. (2009) Identification of Amazonian trees with DNA barcodes. PLOS ONE 4: e7483. doi:10.1371/journal.pone.0007483. PubMed: 19834612.
70. Kress WJ, Erickson DL, Swenson NG, Thompson J, Uriarte M, et al. (2010) Advances in the use of DNA barcodes to build a community phylogeny for tropical trees in a Puerto Rican forest dynamics plot. PLOS ONE 5: e15409. doi:10.1371/journal.pone.0015409. PubMed: 21085700.
71. Pompanon F, Deagle BE, Symondson WO, Brown DS, Jarman SN, et al. (2012) Who is eating what: diet assessment using next generation sequencing. Mol Ecol 21: 1931-1950. doi:10.1111/j.1365-294X.2011.05403.x. PubMed: 22171763.