Diversity and genetic structure among subpopulations of Gossypium mustelinum (Malvaceae)

Genetics and Molecular Research

Volumn 12, Issue 1, 2013, Pages 597-609

  Alves, M F ^a   Barroso, P A V ^b   Ciampi, A Y ^c   Hoffmann, L V ^b   Azevedo, V C R ^c   Cavalcante, U ^d  

^a FEDERAL UNIVERSITY OF GOIÁS   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

^c EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^d UNIVERSITY OF BRASILIA   (Brazil)

Author keywords

Conservation; Genetic structure; Gossypium mustelinum; Microsatellites; Wild cotton

Indexed keywords

ADULT PLANT; ARTICLE; BRAZIL; CONTROLLED STUDY; CROSS BREEDING; GENE FREQUENCY; GENETIC DISTANCE; GENETIC VARIABILITY; GENOTYPE; GOSSYPIUM; GOSSYPIUM MUSTELINUM; HETEROZYGOSITY; NONHUMAN; PLANT REPRODUCTION; POPULATION GENETIC STRUCTURE; SELF FERTILIZATION; SIMPLE SEQUENCE REPEAT; SPECIES CONSERVATION; ALLELE; ANIMAL; CATTLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; GENETICS; GEOGRAPHY; GROWTH, DEVELOPMENT AND AGING; HUMAN; PHYLOGENY; POPULATION GENETICS; RIVER;

MICROSATELLITE DNA; PLANT DNA;

ALLELES; ANIMALS; BRAZIL; CATTLE; DNA, PLANT; ECOSYSTEM; GENE FREQUENCY; GENETIC STRUCTURES; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; GOSSYPIUM; HUMANS; MICROSATELLITE REPEATS; PHYLOGENY; RIVERS; SEQUENCE ANALYSIS, DNA;

EID: 84884398573     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: 10.4238/2013.February.27.9     Document Type: Article

References (32)

1. Almeida VC, Hoffmann LV, Yokomizo GK, Costa JN, et al. (2009). In situ and genetic characterization of Gossypium barbadense L. from the States of Pará and Amapá, Brazil. Pesq. Agropec. Bras. 44: 719-725.
2. Barroso PAV, Hoffmann LV, Freitas RB, Batista CEA, et al. (2010). In situ conservation and genetic diversity of three populations of Gossypium mustelinum Miers ex Watt. Genet. Resour. Crop Evol. 57: 343-349.
3. Bertini CHCM, Schuster I, Sediyama T, Barros EG, et al. (2006). Characterization and genetic diversity analysis of cotton using microsatellites. Genet. Mol. Biol. 29: 321-329.
4. Borém A, Freire EC, Penna JCV and Barroso PAV (2003). Considerations about gene escape of cotton in Brazil. Crop Breed. Appl. Biotechnol. 3: 315-332.
5. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, et al. (1994). High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368: 455-457.
6. Cavalcante U (2011). Caracterização Genética de Populações Naturais de Gossypium mustelinum Miers ex Watt. Master's thesis, UFRPE, Recife.
7. Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
8. Evanno G, Regnaut S and Goudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620.
9. Freire EC (2002). Fluxo gênico entre algodoeiros convencionais e transgênicos. Rev. Bras. Ol. Fibros. 6: 471-482.
10. Freire EC, Moreira JAN, Miranda AR, Percival AE, et al. (1990). Identificação de Novos Sítios de Ocorrência de Gossypium mustelinum no Brasil. Volume 10. Pesquisa em Andamento. Embrapa Algodão, Campina Grande.
11. Fu Y and Somers D (2009). Genome-wide reduction of genetic diversity in wheat breeding. Crop Sci. 49: 161-168.
12. Goudet J (2001). FSTAT: Program to Estimate and Test Gene Diversities and Fixation Indices (Software). Version 2.9.3. Available at [http://www2.unil.ch/popgen/softwares/fstat.htm]. Accessed July 27, 2011.
13. Iqbal MJ, Reddy OUK, El-Zik KM and Pepper AE (2001). A genetic bottleneck in the 'evolution under domestication' of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor. Appl. Genet. 103: 547-554.
14. Kimura M and Weiss GH (1964). The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49: 561-576.
15. Lewis PO and Zaykin D (2001). Genetic Data Analysis: Computer Program for the Analysis of Allelic Data, Version 1.0 (d16c). Available at [http://hydrodictyon.eeb.uconn.edu/people/plewis/]. Accessed July 9, 2011.
16. Liu S, Saha S, Stelly D, Burr B, et al. (2000). Chromosomal assignment of microsatellite loci in cotton. J. Hered. 91: 326-332.
17. Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
18. McCarty JC, Wu J and Johnie NJ (2007). Use of primitive derived cotton accessions for agronomic and fiber traits improvement: variance components and genetic effects. Crop Sci. 47: 100-110.
19. Menezes IPP, Hoffmann LV, Alves MF, Morello CL, et al. (2008). Genetic distance among advanced lineages of cotton germplasm using RAPD and microsatellite markers. Pesq. Agropec. Bras. 10: 1339-1347.
20. Menezes IPP, Barroso PAV, Hoffmann LV, Lucena VS, et al. (2010). Genetic diversity of mocó cotton (Gossypium hirsutum race marie-galante) from the northeast of Brazil: implications for conservation. Botany 88: 765-773.
21. Minch E (1997). MICROSAT. Version 1.5b. Stanford University Medical Center, Stanford. Available at [http://genetics.stanford.edu/hpgl/projects/microsat/]. Accessed July 18, 2011.
22. Nei M (1972). Genetic distance between populations. Am. Nat. 106: 283-292.
23. Neves OS, Cavaleri PA, Grid-Papp IL and Fuzzato MG (1965). Algodoeiro selvagem do Nordeste do Brasil. Bragantia 24: 19-25.
24. Nguyen TB, Giband M, Brottier P, Risterucci AM, et al. (2004). Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor. Appl. Genet. 109: 167-175.
25. Pickersgill B, Barrett SCH and Andrade D (1975). Wild Cotton in Northeast Brazil. Biotropica 7: 42-54.
26. Pritchard JK, Stephens M and Donnelly P (2007). Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
27. Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7.
28. Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
29. Stephens SG and Phillips LL (1972). The history and geographical distribution of a polymorphic system in New World cottons. Biotropica 4: 49-60.
30. Weir BS and Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
31. Wendel JFE and Brubaker CL (1993). RFLP diversity in Gossypium hirsutum L. and new insights into the domestication of cotton. Am. J. Bot. 80: 71.
32. Wendel JFE, Rowley R and Stewart MCD (1994). Genetic diversity in phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae). Plant Syst. Evol. 192: 49-59.