Development of a single multiplex amplification refractory mutation system PCR for the detection of rifampin-resistant Mycobacterium tuberculosis

Gene

Volumn 530, Issue 1, 2013, Pages 95-99

  Shi, Xiaodan ^a,b   Zhang, Chen ^a   Shi, Ming ^b   Yang, Mengjie ^a   Zhang, Yi ^a   Wang, Ji ^a   Shen, Hongwei ^a   Zhao, Gang ^b   Ma, Xuejun ^a  

^a BEIJING HOSPITAL   (China)

^b FOURTH MILITARY MEDICAL UNIVERSITY   (China)

Author keywords

Drug resistant; M ARMS PCR; M. tuberculosis; RpoB

Indexed keywords

RIFAMPICIN;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIUM CULTURE; BACTERIUM DETECTION; CAPILLARY ELECTROPHORESIS; CLINICAL PROTOCOL; CODON; DEVELOPING COUNTRY; DNA SEQUENCE; GENETIC ASSOCIATION; MULTIPLEX POLYMERASE CHAIN REACTION; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; SINGLE MULTIPLEX AMPLIFICATION REFRACTORY MUTATION SYSTEM POLYMERASE CHAIN REACTION;

AMPLIFICATION REFRACTORY MUTATION SYSTEM PCR; ARMS-PCR; DEPARTMENT OF HEALTH AND HUMAN SERVICES; DHHS; DR; DRUG RESISTANCE; DRUG SUSCEPTIBILITY TESTING; DRUG-RESISTANT; DST; EMB; ETHAMBUTOL; INH; ISONIAZID; LJ; LOWENSTEIN-JENSEN MEDIA; M-ARMS-PCR; M. TUBERCULOSIS; MDR-TB; MTB; MULTIDRUG-RESISTANT TUBERCULOSIS; MULTIPLEX AMPLIFICATION REFRACTORY MUTATION SYSTEM PCR; MYCOBACTERIUM TUBERCULOSIS; RIF; RIFAMPICIN; RIFAMPICIN RESISTANCE DETERMINING REGION; RPOB; RRDR; SDS; SM; SODIUM DODECYL SULFATE; STREPTOMYCIN;

DNA, BACTERIAL; DRUG RESISTANCE, MULTIPLE, BACTERIAL; HUMANS; MICROBIAL SENSITIVITY TESTS; MULTIPLEX POLYMERASE CHAIN REACTION; MUTATION; MYCOBACTERIUM TUBERCULOSIS; RIFAMPIN; TUBERCULOSIS, MULTIDRUG-RESISTANT;

MYCOBACTERIUM TUBERCULOSIS;

EID: 84884206249     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.07.060     Document Type: Article

References (35)

1. Albert H., et al. Rapid screening of MDR-TB using molecular Line Probe Assay is feasible in Uganda. BMC Infect. Dis. 2010, 10:41.
2. Aldous W.K., Pounder J.I., Cloud J.L., Woods G.L. Comparison of six methods of extracting Mycobacterium tuberculosis DNA from processed sputum for testing by quantitative real-time PCR. J. Clin. Microbiol. 2005, 43:2471-2473.
3. Guidelines for surveillance of drug resistance in tuberculosis. WHO Geneva/IUATLD Paris. International Union Against Tuberculosis and Lung Disease. Int. J. Tuberc. Lung Dis. 1998, 2:72-89.
4. Anon. WHO Report 2011: Global Tuberculosis Control 2011, (WHO/HTM/TB/201116 2011).
5. Chan A.C., Lo C.M., Ng K.K., Chan S.C., Fan S.T. Implications for management of Mycobacterium tuberculosis infection in adult-to-adult live donor liver transplantation. Liver Int. 2007, 27:81-85.
6. Chan R.C., et al. Genetic and phenotypic characterization of drug-resistant Mycobacterium tuberculosis isolates in Hong Kong. J. Antimicrob. Chemother. 2007, 59:866-873.
7. Chryssanthou E., Angeby K. The GenoType(R) MTBDRplus assay for detection of drug resistance in Mycobacterium tuberculosis in Sweden. APMIS 2012, 120:405-409.
8. Cole S.T. Mycobacterium tuberculosis: drug-resistance mechanisms. Trends Microbiol. 1994, 2:411-415.
9. Fan X.Y., Hu Z.Y., Xu F.H., Yan Z.Q., Guo S.Q., Li Z.M. Rapid detection of rpoB gene mutations in rifampin-resistant Mycobacterium tuberculosis isolates in Shanghai by using the amplification refractory mutation system. J. Clin. Microbiol. 2003, 41:993-997.
10. Heym B., Philipp W., Cole S.T. Mechanisms of drug resistance in Mycobacterium tuberculosis. Curr. Top. Microbiol. Immunol. 1996, 215:49-69.
11. These HIV deaths include 0.4million deaths from TB http://apps.who.int/ghodata.
12. Huang W.L., Chen H.Y., Kuo Y.M., Jou R. Performance assessment of the GenoType MTBDRplus test and DNA sequencing in detection of multidrug-resistant Mycobacterium tuberculosis. J. Clin. Microbiol. 2009, 47:2520-2524.
13. Imperiale B.R., Cataldi A.A., Morcillo N.S. Rapid detection of multidrug-resistant Mycobacterium tuberculosis by multiplex allele-specific polymerase chain reaction. Int. J. Tuberc. Lung Dis. 2011, 15:496-501.
14. Jin J., et al. Evaluation of the GenoType(R) MTBDRplus assay and identification of a rare mutation for improving MDR-TB detection. Int. J. Tuberc. Lung Dis. 2012, 16:521-526.
15. Khosravi A.D., Goodarzi H., Alavi S.M. Detection of genomic mutations in katG, inhA and rpoB genes of Mycobacterium tuberculosis isolates using polymerase chain reaction and multiplex allele-specific polymerase chain reaction. Braz. J. Infect. Dis. 2012, 16:57-62.
16. Konno K., Oizumi K., Hayashi I., Oka S. Mode of action of rifampicin on Mycobacterium tuberculosis. Kekkaku 1972, 47:255-260.
17. Li J., et al. The development of a GeXP-based multiplex reverse transcription-PCR assay for simultaneous detection of sixteen human respiratory virus types/subtypes. BMC Infect. Dis. 2012, 12:189.
18. Little S. Amplification-refractory mutation system (ARMS) analysis of point mutations. Curr. Protoc. Hum. Genet. 2001, 9:9.8.1-9.8.12.
19. Liu Y.Z.C., et al. Development of a multiplex tetra-primer amplification refractory mutation system PCR to detect three single nucleotide polymorphisms associated with breast cancer. Sci. Sin.Vitae 2012, 42. 10.1360/052011-628.
20. Ma X., et al. rpoB gene mutations and molecular characterization of rifampin-resistant Mycobacterium tuberculosis isolates from Shandong Province, China. J. Clin. Microbiol. 2006, 44:3409-3412.
21. Marttila H.J., et al. Rapid detection of rifampin-resistant Mycobacterium tuberculosis by sequencing and line probe assay. Scand. J. Infect. Dis. 1998, 30:129-132.
22. Marttila H.J., et al. Line probe assay in the rapid detection of rifampin-resistant Mycobacterium tuberculosis directly from clinical specimens. Scand. J. Infect. Dis. 1999, 31:269-273.
23. Miller L.P., Crawford J.T., Shinnick T.M. The rpoB gene of Mycobacterium tuberculosis. Antimicrob. Agents Chemother. 1994, 38:805-811.
24. Newton C.R., et al. Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res. 1989, 17:2503-2516.
25. O'Riordan P., et al. Rapid molecular detection of rifampicin resistance facilitates early diagnosis and treatment of multi-drug resistant tuberculosis: case control study. PLoS One 2008, 3:e3173.
26. Rastogi N., David H.L. Mode of action of antituberculous drugs and mechanisms of drug resistance in Mycobacterium tuberculosis. Res. Microbiol. 1993, 144:133-143.
27. Siddiqi S., et al. Direct drug susceptibility testing of Mycobacterium tuberculosis for rapid detection of multidrug resistance using the Bactec MGIT 960 system: a multicenter study. J. Clin. Microbiol. 2012, 50:435-440.
28. Somoskovi A., Parsons L.M., Salfinger M. The molecular basis of resistance to isoniazid, rifampin, and pyrazinamide in Mycobacterium tuberculosis. Respir. Res. 2001, 2:164-168.
29. Tho D.Q., et al. Comparison of MAS-PCR and GenoType MTBDR assay for the detection of rifampicin-resistant Mycobacterium tuberculosis. Int. J. Tuberc. Lung Dis. 2008, 12:1306-1312.
30. Traore H., et al. Low-cost rapid detection of rifampicin resistant tuberculosis using bacteriophage in Kampala Uganda. Ann. Clin. Microbiol. Antimicrob. 2007, 6:1.
31. Wang R., et al. Crystal structures and site-directed mutagenesis of a mycothiol-dependent enzyme reveal a novel folding and molecular basis for mycothiol-mediated maleylpyruvate isomerization. J. Biol. Chem. 2007, 282:16288-16294.
32. Wang Q., et al. A newly identified 191A/C mutation in the Rv2629 gene that was significantly associated with rifampin resistance in Mycobacterium tuberculosis. J. Proteome Res. 2007, 6:4564-4571.
33. Yip C.W., et al. Denaturing HPLC for high-throughput screening of rifampicin-resistant Mycobacterium tuberculosis isolates. Int. J. Tuberc. Lung Dis. 2006, 10:625-630.
34. Yip C.W., Chan M.Y., Cheung W.F., Yu K.W., Tang H.S., Kam K.M. Random blinded rechecking of sputum acid-fast bacilli smear using fluorescence microscopy: 8years' experience. Int. J. Tuberc. Lung Dis. 2012, 16:398-401.
35. Zhang C., et al. A novel multiplex tetra-primer ARMS-PCR for the simultaneous genotyping of six single nucleotide polymorphisms associated with female cancers. PLoS One 2013, 8:e62126.