메뉴 건너뛰기




Volumn 14, Issue 9, 2013, Pages 18740-18757

The MAPKKK gene family in Gossypium raimondii: Genome-wide identification, classification and expression analysis

Author keywords

Cotton; Gene family; MAPK cascade; MAPKKK; Ovule

Indexed keywords

HEAT SHOCK PROTEIN 90; MEKK PROTEIN; MITOGEN ACTIVATED PROTEIN KINASE KINASE; RAF PROTEIN; TRANSCRIPTOME; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; ZIK PROTEIN;

EID: 84884183628     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms140918740     Document Type: Article
Times cited : (39)

References (49)
  • 1
    • 0029328507 scopus 로고
    • Plant homologues of components of MAPK (mitogen-activated protein kinase) signal pathways in yeast and animal cells
    • Nishihama, R.; Banno, H.; Shibata, W.; Hirano, K.; Nakashima, M.; Usami, S.; Machida, Y. Plant homologues of components of MAPK (mitogen-activated protein kinase) signal pathways in yeast and animal cells. Plant Cell Physiol. 1995, 36, 749-757.
    • (1995) Plant Cell Physiol , vol.36 , pp. 749-757
    • Nishihama, R.1    Banno, H.2    Shibata, W.3    Hirano, K.4    Nakashima, M.5    Usami, S.6    Machida, Y.7
  • 2
    • 33746275960 scopus 로고    scopus 로고
    • Signaling through MAP kinase networks in plants
    • Mishra, N.S.; Tuteja, R.; Tuteja, N. Signaling through MAP kinase networks in plants. Arch. Biochem. Biophys. 2006, 452, 55-68.
    • (2006) Arch. Biochem. Biophys , vol.452 , pp. 55-68
    • Mishra, N.S.1    Tuteja, R.2    Tuteja, N.3
  • 3
    • 84871763504 scopus 로고    scopus 로고
    • Mitogen-activated protein (MAP) kinases in plant metal stress: Regulation and responses in comparison to other biotic and abiotic stresses
    • Opdenakker, K.; Remans, T.; Vangronsveld, J.; Cuypers, A. Mitogen-activated protein (MAP) kinases in plant metal stress: Regulation and responses in comparison to other biotic and abiotic stresses. Int. J. Mol. Sci. 2012, 13, 7828-7853.
    • (2012) Int. J. Mol. Sci , vol.13 , pp. 7828-7853
    • Opdenakker, K.1    Remans, T.2    Vangronsveld, J.3    Cuypers, A.4
  • 4
    • 77952478526 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase signaling in plants
    • Rodriguez, M.C.; Petersen, M.; Mundy, J. Mitogen-activated protein kinase signaling in plants. Annu. Rev. Plant Biol. 2010, 61, 621-649.
    • (2010) Annu. Rev. Plant Biol , vol.61 , pp. 621-649
    • Rodriguez, M.C.1    Petersen, M.2    Mundy, J.3
  • 5
    • 0242361581 scopus 로고    scopus 로고
    • Transcriptional regulation by the MAP kinase signaling cascades
    • Yang, S.H.; Sharrocks, A.D.; Whitmarsh, A.J. Transcriptional regulation by the MAP kinase signaling cascades. Gene 2003, 320, 3-21.
    • (2003) Gene , vol.320 , pp. 3-21
    • Yang, S.H.1    Sharrocks, A.D.2    Whitmarsh, A.J.3
  • 6
    • 34547196977 scopus 로고    scopus 로고
    • Regulation of gene transcription by mitogen-activated protein kinase signaling pathways
    • Whitmarsh, A.J. Regulation of gene transcription by mitogen-activated protein kinase signaling pathways. Biochim. Biophys. Acta 2007, 1773, 1285-1298.
    • (2007) Biochim. Biophys. Acta , vol.1773 , pp. 1285-1298
    • Whitmarsh, A.J.1
  • 7
    • 84858236398 scopus 로고    scopus 로고
    • Working without kinase activity: Phosphotransfer-independent functions of extracellular signal-regulated kinases
    • Rodriguez, J.; Crespo, P. Working without kinase activity: Phosphotransfer-independent functions of extracellular signal-regulated kinases. Sci. Sign. 2011, 4, re3.
    • (2011) Sci. Sign , vol.4 , pp. 3
    • Rodriguez, J.1    Crespo, P.2
  • 8
    • 78650154390 scopus 로고    scopus 로고
    • MAPK machinery in plants: Recognition and response to different stresses through multiple signal transduction pathways
    • Taj, G.; Agarwal, P.; Grant, M.; Kumar, A. MAPK machinery in plants: Recognition and response to different stresses through multiple signal transduction pathways. Plant Sign. Behave. 2010, 5, 1370-1378.
    • (2010) Plant Sign. Behave , vol.5 , pp. 1370-1378
    • Taj, G.1    Agarwal, P.2    Grant, M.3    Kumar, A.4
  • 9
    • 0027478967 scopus 로고
    • CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases
    • Kieber, J.J.; Rothenberg, M.; Roman, G.; Feldmann, K.A.; Ecker, J.R. CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell 1993, 72, 427-441.
    • (1993) Cell , vol.72 , pp. 427-441
    • Kieber, J.J.1    Rothenberg, M.2    Roman, G.3    Feldmann, K.A.4    Ecker, J.R.5
  • 10
    • 0035793044 scopus 로고    scopus 로고
    • Negative regulation of defense responses in plants by a conserved MAPKK kinase
    • Frye, C.A.; Tang, D.; Innes, R.W. Negative regulation of defense responses in plants by a conserved MAPKK kinase. Proc. Natl. Acad. Sci. USA 2001, 98, 373-378.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 373-378
    • Frye, C.A.1    Tang, D.2    Innes, R.W.3
  • 12
    • 80052440058 scopus 로고    scopus 로고
    • MAPK signaling in plant hormone ethylene signal transduction
    • Yoo, S.D.; Sheen, J. MAPK signaling in plant hormone ethylene signal transduction. Plant Sign. Behav. 2008, 3, 848-849.
    • (2008) Plant Sign. Behav , vol.3 , pp. 848-849
    • Yoo, S.D.1    Sheen, J.2
  • 13
    • 26944486914 scopus 로고    scopus 로고
    • Regulation of plant disease resistance, stress responses, cell death, and ethylene signaling in Arabidopsis by the EDR1 protein kinase
    • Tang, D.; Christiansen, K.M.; Innes, R.W. Regulation of plant disease resistance, stress responses, cell death, and ethylene signaling in Arabidopsis by the EDR1 protein kinase. Plant Physiol. 2005, 138, 1018-1026.
    • (2005) Plant Physiol , vol.138 , pp. 1018-1026
    • Tang, D.1    Christiansen, K.M.2    Innes, R.W.3
  • 14
    • 72949098809 scopus 로고    scopus 로고
    • Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance
    • Kim, J.A.; Cho, K.; Singh, R.; Jung, Y.H.; Jeong, S.H.; Kim, S.H.; Lee, J.E.; Cho, Y.S.; Agrawal, G.K.; Rakwal, R. et al. Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance. Mol. Cells 2009, 28, 431-439.
    • (2009) Mol. Cells , vol.28 , pp. 431-439
    • Kim, J.A.1    Cho, K.2    Singh, R.3    Jung, Y.H.4    Jeong, S.H.5    Kim, S.H.6    Lee, J.E.7    Cho, Y.S.8    Agrawal, G.K.9    Rakwal, R.10
  • 15
    • 75949087921 scopus 로고    scopus 로고
    • A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice
    • Ning, J.; Li, X.; Hicks, L.M.; Xiong, L. A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice. Plant Physiol. 2010, 152, 876-890.
    • (2010) Plant Physiol , vol.152 , pp. 876-890
    • Ning, J.1    Li, X.2    Hicks, L.M.3    Xiong, L.4
  • 16
    • 84863013438 scopus 로고    scopus 로고
    • Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice
    • Ning, J.; Zhang, B.; Wang, N.; Zhou, Y.; Xiong, L. Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice. Plant Cell 2011, 23, 4334-4347.
    • (2011) Plant Cell , vol.23 , pp. 4334-4347
    • Ning, J.1    Zhang, B.2    Wang, N.3    Zhou, Y.4    Xiong, L.5
  • 17
    • 0036696447 scopus 로고    scopus 로고
    • NPK1, an MEKK1-like mitogen-activated protein kinase kinase kinase, regulates innate immunity and development in plants
    • Jin, H.; Axtell, M.J.; Dahlbeck, D.; Ekwenna, O.; Zhang, S.; Staskawicz, B.; Baker, B. NPK1, an MEKK1-like mitogen-activated protein kinase kinase kinase, regulates innate immunity and development in plants. Dev. Cell 2002, 3, 291-297.
    • (2002) Dev. Cell , vol.3 , pp. 291-297
    • Jin, H.1    Axtell, M.J.2    Dahlbeck, D.3    Ekwenna, O.4    Zhang, S.5    Staskawicz, B.6    Baker, B.7
  • 19
    • 0030052839 scopus 로고    scopus 로고
    • A gene encoding a mitogen-activated protein kinase kinase kinase is induced simultaneously with genes for a mitogen-activated protein kinase and an S6 ribosomal protein kinase by touch, cold, and water stress in Arabidopsis thaliana
    • Mizoguchi, T.; Irie, K.; Hirayama, T.; Hayashida, N.; Yamaguchi-Shinozaki, K.; Matsumoto, K.; Shinozaki, K. A gene encoding a mitogen-activated protein kinase kinase kinase is induced simultaneously with genes for a mitogen-activated protein kinase and an S6 ribosomal protein kinase by touch, cold, and water stress in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 1996, 93, 765-769.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 765-769
    • Mizoguchi, T.1    Irie, K.2    Hirayama, T.3    Hayashida, N.4    Yamaguchi-Shinozaki, K.5    Matsumoto, K.6    Shinozaki, K.7
  • 20
    • 60249087709 scopus 로고    scopus 로고
    • A major role of the MEKK1-MKK1/2-MPK4 pathway in ROS signalling
    • Pitzschke, A.; Djamei, A.; Bitton, F.; Hirt, H. A major role of the MEKK1-MKK1/2-MPK4 pathway in ROS signalling. Mol. Plant 2009, 2, 120-137.
    • (2009) Mol. Plant , vol.2 , pp. 120-137
    • Pitzschke, A.1    Djamei, A.2    Bitton, F.3    Hirt, H.4
  • 21
    • 78149433187 scopus 로고    scopus 로고
    • Tomato MAPKKKε is a positive regulator of cell-death signaling networks associated with plant immunity
    • Melech-Bonfil, S.; Sessa, G. Tomato MAPKKKε is a positive regulator of cell-death signaling networks associated with plant immunity. Plant J. 2010, 64, 379-391.
    • (2010) Plant J , vol.64 , pp. 379-391
    • Melech-Bonfil, S.1    Sessa, G.2
  • 22
    • 4143088379 scopus 로고    scopus 로고
    • MAPKKKα is a positive regulator of cell death associated with both plant immunity and disease
    • Del Pozo, O.; Pedley, K.F.; Martin, G.B. MAPKKKα is a positive regulator of cell death associated with both plant immunity and disease. EMBO J. 2004, 23, 3072-3082.
    • (2004) EMBO J , vol.23 , pp. 3072-3082
    • Del Pozo, O.1    Pedley, K.F.2    Martin, G.B.3
  • 23
    • 0034763215 scopus 로고    scopus 로고
    • Plant MAP kinase pathways: How many and what for?
    • Wrzaczek, M.; Hirt, H. Plant MAP kinase pathways: How many and what for? Biol. Cell 2001, 93, 81-87.
    • (2001) Biol. Cell , vol.93 , pp. 81-87
    • Wrzaczek, M.1    Hirt, H.2
  • 24
    • 77955942478 scopus 로고    scopus 로고
    • In silico analysis reveals 75 members of mitogen-activated protein kinase kinase kinase gene family in rice
    • Rao, K.P.; Richa, T.; Kumar, K.; Raghuram, B.; Sinha, A.K. In silico analysis reveals 75 members of mitogen-activated protein kinase kinase kinase gene family in rice. DNA Res. 2010, 17, 139-153.
    • (2010) DNA Res , vol.17 , pp. 139-153
    • Rao, K.P.1    Richa, T.2    Kumar, K.3    Raghuram, B.4    Sinha, A.K.5
  • 25
    • 84874540779 scopus 로고    scopus 로고
    • Genome-wide identification and analysis of expression profiles of maize mitogen-activated protein kinase kinase kinase
    • Kong, X.; Lv, W.; Zhang, D.; Jiang, S.; Zhang, S.; Li, D. Genome-wide identification and analysis of expression profiles of maize mitogen-activated protein kinase kinase kinase. PLoS One 2013, 8, e57714.
    • (2013) PLoS One , vol.8
    • Kong, X.1    Lv, W.2    Zhang, D.3    Jiang, S.4    Zhang, S.5    Li, D.6
  • 26
    • 84871428041 scopus 로고    scopus 로고
    • Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
    • Paterson, A.H.; Wendel, J.F.; Gundlach, H. et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 2012, 492, 423-427.
    • (2012) Nature , vol.492 , pp. 423-427
    • Paterson, A.H.1    Wendel, J.F.2    Gundlach, H.3
  • 28
    • 0038714319 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase cascades in plants: A new nomenclature
    • Ichimura, K. Mitogen-activated protein kinase cascades in plants: A new nomenclature. Trends Plant Sci.2002, 7, 301-308.
    • (2002) Trends Plant Sci , vol.7 , pp. 301-308
    • Ichimura, K.1
  • 29
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • Chou, K.C.; Shen, H.B. Recent progress in protein subcellular location prediction. Anal. Biochem. 2007, 370, 1-16.
    • (2007) Anal. Biochem , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 30
    • 34249676330 scopus 로고    scopus 로고
    • MAP kinases function downstream of HSP90 and upstream of mitochondria in TMV resistance gene N-mediated hypersensitive cell death
    • Takabatake, R.; Ando, Y.; Seo, S.; Katou, S.; Tsuda, S.; Ohashi, Y.; Mitsuhara, I. MAP kinases function downstream of HSP90 and upstream of mitochondria in TMV resistance gene N-mediated hypersensitive cell death. Plant Cell Physiol. 2007, 48, 498-510.
    • (2007) Plant Cell Physiol , vol.48 , pp. 498-510
    • Takabatake, R.1    Ando, Y.2    Seo, S.3    Katou, S.4    Tsuda, S.5    Ohashi, Y.6    Mitsuhara, I.7
  • 31
    • 16444378057 scopus 로고    scopus 로고
    • Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus
    • Schauser, L.; Wieloch, W.; Stougaard, J. Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evolut. 2005, 60, 229-237.
    • (2005) J. Mol. Evolut , vol.60 , pp. 229-237
    • Schauser, L.1    Wieloch, W.2    Stougaard, J.3
  • 32
    • 84867098172 scopus 로고    scopus 로고
    • Endocytosis of the seven-transmembrane RGS1 protein activates G-protein-coupled signalling in Arabidopsis
    • Urano, D.; Phan, N.; Jones, J.C.; Yang, J.; Huang, J.; Grigston, J.; Taylor, J.P.; Jones, A.M. Endocytosis of the seven-transmembrane RGS1 protein activates G-protein-coupled signalling in Arabidopsis. Nat. Cell Biol. 2012, 14, 1079-1088.
    • (2012) Nat. Cell Biol , vol.14 , pp. 1079-1088
    • Urano, D.1    Phan, N.2    Jones, J.C.3    Yang, J.4    Huang, J.5    Grigston, J.6    Taylor, J.P.7    Jones, A.M.8
  • 33
    • 49349117363 scopus 로고    scopus 로고
    • The plant WNK gene family and regulation of flowering time in Arabidopsis
    • Wang, Y.; Liu, K.; Liao, H.; Zhuang, C.; Ma, H.; Yan, X. The plant WNK gene family and regulation of flowering time in Arabidopsis. Plant Biol. 2008, 10, 548-562.
    • (2008) Plant Biol , vol.10 , pp. 548-562
    • Wang, Y.1    Liu, K.2    Liao, H.3    Zhuang, C.4    Ma, H.5    Yan, X.6
  • 34
    • 0036016411 scopus 로고    scopus 로고
    • An Arabidopsis mitogen-activated protein kinase kinase kinase gene family encodes essential positive regulators of cytokinesis
    • Krysan, P.J.; Jester, P.J.; Gottwald, J.R.; Sussman, M.R. An Arabidopsis mitogen-activated protein kinase kinase kinase gene family encodes essential positive regulators of cytokinesis. Plant Cell 2002, 14, 1109-1120.
    • (2002) Plant Cell , vol.14 , pp. 1109-1120
    • Krysan, P.J.1    Jester, P.J.2    Gottwald, J.R.3    Sussman, M.R.4
  • 35
    • 73849106600 scopus 로고    scopus 로고
    • Arabidopsis MPK6 is involved in cell division plane control during early root development, and localizes to the pre-prophase band, phragmoplast, trans-Golgi network and plasma membrane
    • Muller, J.; Beck, M.; Mettbach, U.; Komis, G.; Hause, G.; Menzel, D.; Samaj, J. Arabidopsis MPK6 is involved in cell division plane control during early root development, and localizes to the pre-prophase band, phragmoplast, trans-Golgi network and plasma membrane. Plant J. 2010, 61, 234-248.
    • (2010) Plant J , vol.61 , pp. 234-248
    • Muller, J.1    Beck, M.2    Mettbach, U.3    Komis, G.4    Hause, G.5    Menzel, D.6    Samaj, J.7
  • 36
    • 79551544921 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase 4 is involved in the regulation of mitotic and cytokinetic microtubule transitions in Arabidopsis thaliana
    • Beck, M.; Komis, G.; Ziemann, A.; Menzel, D.; Samaj, J. Mitogen-activated protein kinase 4 is involved in the regulation of mitotic and cytokinetic microtubule transitions in Arabidopsis thaliana. New Phytol. 2011, 189, 1069-1083.
    • (2011) New Phytol , vol.189 , pp. 1069-1083
    • Beck, M.1    Komis, G.2    Ziemann, A.3    Menzel, D.4    Samaj, J.5
  • 37
    • 0032574778 scopus 로고    scopus 로고
    • Association of the Arabidopsis CTR1 Raf-like kinase with the ETR1 and ERS ethylene receptors
    • Clark, K.L.; Larsen, P.B.; Wang, X.; Chang, C. Association of the Arabidopsis CTR1 Raf-like kinase with the ETR1 and ERS ethylene receptors. Proc. Natl. Acad. Sci. USA 1998, 95, 5401-5406.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 5401-5406
    • Clark, K.L.1    Larsen, P.B.2    Wang, X.3    Chang, C.4
  • 38
    • 0037266972 scopus 로고    scopus 로고
    • Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis
    • Huang, Y.; Li, H.; Hutchison, C.E.; Laskey, J.; Kieber, J.J. Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis. Plant J. 2003, 33, 221-233.
    • (2003) Plant J , vol.33 , pp. 221-233
    • Huang, Y.1    Li, H.2    Hutchison, C.E.3    Laskey, J.4    Kieber, J.J.5
  • 39
    • 33745462176 scopus 로고    scopus 로고
    • Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation
    • Shi, Y.H.; Zhu, S.W.; Mao, X.Z.; Feng, J.X.; Qin, Y.M.; Zhang, L.; Cheng, J.; Wei, L.P.; Wang, Z.Y.; Zhu, Y.X. Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation. Plant Cell 2006, 18, 651-664.
    • (2006) Plant Cell , vol.18 , pp. 651-664
    • Shi, Y.H.1    Zhu, S.W.2    Mao, X.Z.3    Feng, J.X.4    Qin, Y.M.5    Zhang, L.6    Cheng, J.7    Wei, L.P.8    Wang, Z.Y.9    Zhu, Y.X.10
  • 40
    • 84884185945 scopus 로고    scopus 로고
    • NCBI. Available online, accessed on 29 December 2012
    • NCBI. Available online: http://www.ncbi.nlm.nih.gov/ (accessed on 29 December 2012).
  • 41
    • 84884197751 scopus 로고    scopus 로고
    • Cotton Genome Project. Available online, accessed on 29 December 2012
    • Cotton Genome Project. Available online: http://cgp.genomics.org.cn/page/species/index.jsp/ (accessed on 29 December 2012).
  • 42
    • 84884200729 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource. Available online, accessed on 9 January 2013
    • The Arabidopsis Information Resource. Available online: http://www.arabidopsis.org/ (accessed on 9 January 2013).
  • 43
    • 84871120858 scopus 로고    scopus 로고
    • Available online, accessed on 10 January 2013 ftp://ftp.plantbiology.msu.edu/
    • Rice Genome Annotation Project. Available online: ftp://ftp.plantbiology.msu.edu/ (accessed on 10 January 2013).
    • Rice Genome Annotation Project
  • 44
    • 84884194673 scopus 로고    scopus 로고
    • PROSITE program. ExPASy server. Available online, accessed on 19 June 2013
    • PROSITE program. ExPASy server. Available online: http://www.expasy.ch/prosite/ (accessed on 19 June 2013).
  • 45
    • 84884182535 scopus 로고    scopus 로고
    • Compute pI/Mw tool. ExPASy server. Available online, accessed on 19 June 2013
    • Compute pI/Mw tool. ExPASy server. Available online: http://web.expasy.org/compute_pi/ (accessed on 19 June 2013).
  • 47
    • 84884191431 scopus 로고    scopus 로고
    • CELLO v2.5. Available online, accessed on 29 June 2013
    • CELLO v2.5. Available online: http://cello.life.nctu.edu.tw/ (accessed on 29 June 2013).
  • 48
    • 84884200202 scopus 로고    scopus 로고
    • ClustalW2. Available online, accessed on 29 June 2013
    • ClustalW2. Available online: http://www.ebi.ac.uk/Tools/msa/clustalw2/ (accessed on 29 June 2013).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.